1
|
Fang Y, Shao X, Liu B, Lv H. Optical coherence tomography image despeckling based on tensor singular value decomposition and fractional edge detection. Heliyon 2023; 9:e17735. [PMID: 37449117 PMCID: PMC10336597 DOI: 10.1016/j.heliyon.2023.e17735] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2022] [Revised: 06/26/2023] [Accepted: 06/27/2023] [Indexed: 07/18/2023] Open
Abstract
Optical coherence tomography (OCT) imaging is a technique that is frequently used to diagnose medical conditions. However, coherent noise, sometimes referred to as speckle noise, can dramatically reduce the quality of OCT images, which has an adverse effect on how OCT images are used. In order to enhance the quality of OCT images, a speckle noise reduction technique is developed, and this method is modelled as a low-rank tensor approximation issue. The grouped 3D tensors are first transformed into the transform domain using tensor singular value decomposition (t-SVD). Then, to cut down on speckle noise, transform coefficients are thresholded. Finally, the inverse transform can be used to produce images with speckle suppression. To further enhance the despeckling results, a feature-guided thresholding approach based on fractional edge detection and an adaptive backward projection technique are also presented. Experimental results indicate that the presented algorithm outperforms several comparison methods in relation to speckle suppression, objective metrics, and edge preservation.
Collapse
Affiliation(s)
- Ying Fang
- School of Information Technology, Shangqiu Normal University, Shangqiu, 476000, China
| | - Xia Shao
- School of Information Technology, Shangqiu Normal University, Shangqiu, 476000, China
| | - Bangquan Liu
- College of Digital Technology and Engineering, Ningbo University of Finance and Economics, Ningbo, 315100, China
| | - Hongli Lv
- School of Information Technology, Shangqiu Normal University, Shangqiu, 476000, China
- College of Big Data and Software Engineering, Zhejiang Wanli University, Ningbo, 315100, China
| |
Collapse
|
2
|
Zhang Y, He W, Chen F, Wu J, He Y, Xu Z. Denoise ultra-low-field 3D magnetic resonance images using a joint signal-image domain filter. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2022; 344:107319. [PMID: 36332511 DOI: 10.1016/j.jmr.2022.107319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 09/17/2022] [Accepted: 10/18/2022] [Indexed: 06/16/2023]
Abstract
Ultra-low-field magnetic resonance imaging (MRI) could suffer from heavy uncorrelated noise, and its removal could be a critical post-processing task. As a primary source of interference, Gaussian noise could corrupt the sampled MR signal (k-space data), especially at lower B0 field strength. For this reason, we consider both signal and image domains by proposing a new joint filter characterized by a Kalman filter with linear prediction and a nonlocal mean filter with higher-order singular value decomposition (HOSVD) for denoising 3D MR data. The Kalman filter first attenuates the noise in k-space, and then its reconstruction images are used to guide HOSVD denoising process with exploring self-similarity among 3D structures. The clearer prefiltered images could also generate improved HOSVD learned bases used to transform the noise corrupted patch groups in the original MR data. The flexibility of proposed method is also demonstrated by integrating other k-space filters into the algorithm scheme. Experimental data includes simulated MR images with the varying noise level and real MR images obtained from our 50 mT MRI scanner. The results reveal that our method has a better noise-removal ability and introduces lesser unexpected artifacts than other related MRI denoising approaches.
Collapse
Affiliation(s)
- Yuxiang Zhang
- State Key Laboratory of Power Transmission Equipment and System Security and New Technology, Chongqing University, Chongqing, China
| | - Wei He
- State Key Laboratory of Power Transmission Equipment and System Security and New Technology, Chongqing University, Chongqing, China
| | - Fangge Chen
- State Key Laboratory of Power Transmission Equipment and System Security and New Technology, Chongqing University, Chongqing, China
| | - Jiamin Wu
- Shenzhen Academy of Aerospace Technology, Shenzhen, China; Harbin Institute of Technology, Harbin, China
| | - Yucheng He
- Shenzhen Academy of Aerospace Technology, Shenzhen, China
| | - Zheng Xu
- State Key Laboratory of Power Transmission Equipment and System Security and New Technology, Chongqing University, Chongqing, China.
| |
Collapse
|
3
|
He J, Gao P, Zheng X, Zhou Y, He H. Denoising 3D magnetic resonance images based on weighted tensor nuclear norm minimization using balanced nonlocal patch tensors. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103524] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
4
|
Wang L, Xiao D, Hou WS, Wu XY, Jiang B, Chen L. A nonlocal enhanced Low-Rank tensor approximation framework for 3D Magnetic Resonance image denoising. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2021.103302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
|
5
|
Xu Y, Han K, Zhou Y, Wu J, Xie X, Xiang W. Deep Adaptive Blending Network for 3D Magnetic Resonance Image Denoising. IEEE J Biomed Health Inform 2021; 25:3321-3331. [PMID: 34101607 DOI: 10.1109/jbhi.2021.3087407] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
The visual quality of magnetic resonance images (MRIs) is crucial for clinical diagnosis and scientific research. The main source of quality degradation is the noise generated during MRI acquisition. Although denoising MRI by deep learning methods shows great superiority compared with traditional methods, the deep learning methods reported to date in the literature cannot simultaneously leverage long-range and hierarchical information, and cannot adequately utilize the similarity in 3D MRI. In this paper, we address the two issues by proposing a deep adaptive blending network (DABN) characterized by a large receptive field residual dense block and an adaptive blending method. We first propose the large receptive field residual dense block that can capture long-range information and fuse hierarchical features simultaneously. Then we propose the adaptive blending method that produces denoised pixels by adaptively filtering 3D MRI, which explicitly utilizes the similarity in 3D MRI. Residual is also considered as a compensating item after adaptive filtering. The blending adaptive filter and residual are predicted by a network consisting of several large receptive field residual dense blocks. Experimental results show that the proposed DABN outperforms state-of-the-art denoising methods in both clinical and simulated MRI data.
Collapse
|
6
|
Das P, Pal C, Chakrabarti A, Acharyya A, Basu S. Adaptive denoising of 3D volumetric MR images using local variance based estimator. Biomed Signal Process Control 2020. [DOI: 10.1016/j.bspc.2020.101901] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
|
7
|
Leal N, Zurek E, Leal E. Non-Local SVD Denoising of MRI Based on Sparse Representations. SENSORS 2020; 20:s20051536. [PMID: 32164373 PMCID: PMC7085762 DOI: 10.3390/s20051536] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/18/2020] [Revised: 02/12/2020] [Accepted: 02/14/2020] [Indexed: 12/23/2022]
Abstract
Magnetic Resonance (MR) Imaging is a diagnostic technique that produces noisy images, which must be filtered before processing to prevent diagnostic errors. However, filtering the noise while keeping fine details is a difficult task. This paper presents a method, based on sparse representations and singular value decomposition (SVD), for non-locally denoising MR images. The proposed method prevents blurring, artifacts, and residual noise. Our method is composed of three stages. The first stage divides the image into sub-volumes, to obtain its sparse representation, by using the KSVD algorithm. Then, the global influence of the dictionary atoms is computed to upgrade the dictionary and obtain a better reconstruction of the sub-volumes. In the second stage, based on the sparse representation, the noise-free sub-volume is estimated using a non-local approach and SVD. The noise-free voxel is reconstructed by aggregating the overlapped voxels according to the rarity of the sub-volumes it belongs, which is computed from the global influence of the atoms. The third stage repeats the process using a different sub-volume size for producing a new filtered image, which is averaged with the previously filtered images. The results provided show that our method outperforms several state-of-the-art methods in both simulated and real data.
Collapse
Affiliation(s)
- Nallig Leal
- Department of Systems Engineering, Universidad del Norte, Barranquilla 080001, Colombia;
- Correspondence:
| | - Eduardo Zurek
- Department of Systems Engineering, Universidad del Norte, Barranquilla 080001, Colombia;
| | - Esmeide Leal
- Independent Consultant, Barranquilla 080001, Colombia;
| |
Collapse
|
8
|
You X, Cao N, Lu H, Mao M, Wanga W. Denoising of MR images with Rician noise using a wider neural network and noise range division. Magn Reson Imaging 2019; 64:154-159. [PMID: 31220567 DOI: 10.1016/j.mri.2019.05.042] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2019] [Revised: 05/29/2019] [Accepted: 05/30/2019] [Indexed: 10/26/2022]
Abstract
Magnetic resonance (MR) images denoising is important in medical image analysis. Denoising methods based on deep learning have shown great promise and outperform all of the other conventional methods. However, deep-learning methods are limited by the number of training samples. In this article, using a small sample size, we applied a wider denoising neural network to MR images with Rician noise and trained several denoising models. The first model is specific to a certain noise, while the other applies to a wide range of noise levels. We considered the noise range as one interval, two sub-intervals, three sub-intervals, or even more sub-intervals to train the corresponding models. Experimental results demonstrate that for MR images, the proposed deep-learning models are efficient in terms of peak-signal-to-noise ratio, structure-similarity-index metrics and normalized mutual information. In addition, for blind noise, the effect of the three sub-intervals is better than that of the other sub-intervals.
Collapse
Affiliation(s)
- Xuexiao You
- School of Computer and Information, Hohai University, Nanjing 210098, China; School of Mathematics and Statistics, Hubei Normal University, Huangshi 435002, China
| | - Ning Cao
- School of Computer and Information, Hohai University, Nanjing 210098, China.
| | - Hao Lu
- School of Computer and Information, Hohai University, Nanjing 210098, China
| | - Minghe Mao
- School of Computer and Information, Hohai University, Nanjing 210098, China
| | - Wei Wanga
- Key Laboratory of Clinical and Medical Engineering, School of Biomedical Engineering and Informatics, Nanjing Medical University, Nanjing 211166, China
| |
Collapse
|
9
|
A Novel Adaptive Non-Local Means-Based Nonlinear Fitting for Visibility Improving. Symmetry (Basel) 2018. [DOI: 10.3390/sym10120741] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
The spatial-based method has become the most widely used method in improving the visibility of images. The visibility improving is mainly to remove the noise in the image, in order to trade off denoising and detail maintaining. A novel adaptive non-local means-based nonlinear fitting method is proposed in this paper. Firstly, according to the smoothness of the intensity around the central pixel, eight kinds of templates with different precision are exploited to approximate the central pixel through a novel adaptive non-local means filter design; the approximate weight coefficients of templates are derived from the approximation credibility. Subsequently, the fractal correction is used to smooth the denoising results. Eventually, the Rockafellar multiplier method is employed to generalize the smooth plane fitting to any geometric surface, thus yielding the optimal fitting of the center pixel approximation. Through a large number of experiments, it is clearly elucidated that compared with the classical spatial iteration-based methods and the recent denoising algorithms, the proposed algorithm is more robust and has better effect on denoising, while keeping more original details during denoising.
Collapse
|