Robust Single-Shot T2 Mapping via Multiple Overlapping-Echo Acquisition and Deep Neural Network

Fast fluid-attenuated T2 mapping via multiple overlapping-echo detachment acquisition enhances preoperative histological classification of meningiomas

Fluid-attenuated inversion recovery (FLAIR) is indispensable in MRI-based head-and-neck assessments, but its quantitative counterpart remains clinically absent due to the influence of cerebrospinal fluid (CSF) dynamics and the lengthy acquisition time spent on a series of weighting-increasing images. This work implements and validates fast fluid-attenuated T2 (FLA-T2) mapping via inversion-recovery-prepared multiple overlapping-echo detachment imaging (IR-MOLED). The clinical value is prospectively investigated with a cohort of 54 meningioma patients (mean age: 56 years ± 11 [standard deviation]; 19 men). Fluid-attenuated proton density mapping was simultaneously fulfilled and therefore intrinsically co-registered, revealing notable benefits in identifying CSF inflow. In quantifying parenchymal T2, IR-MOLED yielded a mean absolute error of 1.22 ms referring to spin-echo, and in fluid suppression, IR-MOLED exhibited a high radiographic consistence with orthodox FLAIR imaging. Using first-level histogram analysis, results of meningioma investigation first discovered: (1) in grading meningiomas, FLA-T2 mapping (AUC = 0.814) outshined FLAIR imaging (AUC = 0.685), contrast-enhanced T1-weighted imaging (insignificant), and T2 mapping (insignificant); and (2) in typing meningiomas, FLA-T2 classified transitional meningiomas from meningothelial or/and fibrous meningiomas, complementing the predictive ability of T2 mapping. In conclusion, with excluded parametric contribution from free water and standardized voxel value scales, FLA-T2 mapping permits a more precise description of brain parenchyma in both structural morphology and relaxation variables than T2 mapping and is fully superior to FLAIR imaging in preoperatively predicting the histopathologic heterogeneity of meningiomas.

Bridging synthetic and real images: a transferable domain adaptation method for multi-parametric mapping via multiple overlapping-echo detachment imaging

Objective.This study aims to address the challenge of domain discrepancies between synthetic and real data in quantitative MRI, particularly in multi-parametric mapping using multiple overlapping-echo detachment (MOLED) imaging, which provides rapid and versatile imaging for clinical applications.Approach.A domain adaptation method named MaskedUnet was proposed. Specifically, we employed a mask-based self-supervised pre-training model to learn knowledge from unlabeled real MOLED images. Guided by the learned knowledge of the real data distribution, we regenerated synthetic data closer to the real data distribution to enhance the model's generalization ability to real data. Evaluations were performed onT2andT2*MOLED imaging data of two healthy brain volunteers,T2and apparent diffusion coefficient (ADC) MOLED imaging data of a healthy brain volunteer, andT2and ADC MOLED imaging data of 24 patients with brain tumors from 3T MRI scanners were performed, and the results were compared with existing methods to evaluate the effectiveness of the proposed method.Main results.Experimental results demonstrate the effectiveness of the proposed method for MOLED imaging, significantly reducing noise and eliminating streaking artifacts. The normalized mean square error, peak signal-to-noise ratio and structural similarity index of the reconstructed quantitative maps from our method are 0.2170/0.1624, 18.2492/22.7896 dB, 0.7744/0.8162 respectively forT2/T2*of the healthy participants, 0.2423/0.0893, 17.3168/21.9115 dB, 0.7655/0.8416 respectively forT2/ADC of the healthy participant, and 0.1344, 21.2407 dB, 0.8333 respectively for ADC of the healthy participant.Significance.MaskedUnet demonstrates the feasibility to bridge the gap between synthetic and real MOLED data, advancing the application of multi-parametric MOLED quantitative imaging.

Improved deep learning-based IVIM parameter estimation via the use of more "realistic" simulated brain data

BACKGROUND

Due to the low signal-to-noise ratio (SNR) and the limited number of b-values, precise parameter estimation of intravoxel incoherent motion (IVIM) imaging remains an open issue to date, especially for brain imaging where the relatively small difference between D and D* easily leads to outliers and obvious graininess in estimated results.

PURPOSE

To propose a synthetic data driven supervised learning method (SDD-IVIM) for improving precision and noise robustness in IVIM parameter estimation without relying on real-world data for neural network training.

METHODS

On account of the absence of standard IVIM parametric maps from real-world data, a novel model-based method for generating synthetic human brain IVIM data was introduced. Initially, the parameter values of synthetic IVIM parametric maps were sampled from the complex distributions composed of a series of simple and uniform distributions. Subsequently, these parametric maps were modulated with human brain texture to imitate brain tissue structure. Finally, they were used to generate synthetic human brain multi-b-value diffusion-weighted (DW) images based on the IVIM bi-exponential model. With the proposed data synthesis method, an ordinary U-Net with spatial smoothness was employed for IVIM parameter mapping within a supervised learning framework. The performance of SDD-IVIM was evaluated on both numerical phantom and 20 glioma patients. The estimated IVIM parametric maps were compared to those derived from five state-of-the-art methods.

RESULTS

In numerical phantom experiments, SDD-IVIM method produces IVIM parametric maps with lower mean absolute error, lower mean bias, and higher structural similarity compared to the other five methods, especially when the SNR of DW images is low. In glioma patient experiments, SDD-IVIM method offers lower coefficient of variation and more reasonable contrast-to-noise ratio between tumor and contralateral normal appearing white matter than the other five methods.

CONCLUSION

Our method owns superior performance in parametric map quality, parameter estimation precision, and lesion characterization in IVIM parameter estimation, with strong resistance to noise.

Application of Anti-Motion Ultra-Fast Quantitative MRI in Neurological Disorder Imaging: Insights From Huntington's Disease

BACKGROUND

Conventional quantitative MRI (qMRI) scan is time-consuming and highly sensitive to movements, posing great challenges for quantitative images of individuals with involuntary movements, such as Huntington's disease (HD).

PURPOSE

To evaluate the potential of our developed ultra-fast qMRI technique, multiple overlapping-echo detachment (MOLED), in overcoming involuntary head motion and its capacity to quantitatively assess tissue changes in HD.

STUDY TYPE

Prospective.

PHANTOM/SUBJECTS

A phantom comprising 13 tubes of MnCl2 at varying concentrations, 5 healthy volunteers (male/female: 1/4), 22 HD patients (male/female: 14/8) and 27 healthy controls (male/female: 15/12).

FIELD STRENGTH/SEQUENCE

3.0 T. MOLED-T2 sequence, MOLED-T2* sequence, T2-weighted spin-echo sequence, T1-weighted gradient echo sequence, and T2-dark-fluid sequence.

ASSESSMENT

T1-weighted images were reconstructed into high-resolution images, followed by segmentation to delineate regions of interest (ROIs). Subsequently, the MOLED T2 and T2* maps were aligned with the high-resolution images, and the ROIs were transformed into the MOLED image space using the transformation matrix and warp field. Finally, T2 and T2* values were extracted from the MOLED relaxation maps.

STATISTICAL TESTS

Bland-Altman analysis, independent t test, Mann-Whitney U test, Pearson correlation analysis, and Spearman correlation analysis, P < 0.05 was considered statistically significant.

RESULTS

MOLED-T2 and MOLED-T2* sequences demonstrated good accuracy (Meandiff = - 0.20%, SDdiff = 1.05%, and Meandiff = -1.73%, SDdiff = 10.98%, respectively), and good repeatability (average intraclass correlation coefficient: 0.856 and 0.853, respectively). More important, MOLED T2 and T2* maps remained artifact-free across all HD patients, even in the presence of apparent head motions. Moreover, there were significant differences in T2 and T2* values across multiple ROIs between HD and controls.

DATA CONCLUSION

The ultra-fast scanning capabilities of MOLED effectively mitigate the impact of head movements, offering a robust solution for quantitative imaging in HD. Moreover, T2 and T2* values derived from MOLED provide powerful capabilities for quantifying tissue changes.

PLAIN LANGUAGE SUMMARY

Quantitative MRI scan is time-consuming and sensitive to movements. Consequently, obtaining quantitative images is challenging for patients with involuntary movements, such as those with Huntington's Disease (HD). In response, a newly developed MOLED technique has been introduced, promising to resist motion through ultra-fast scan. This technique has demonstrated excellent accuracy and reproducibility and importantly all HD patient's MOLED maps remained artifacts-free. Additionally, there were significant differences in T2 and T2∗ values across ROIs between HD and controls. The robust resistance of MOLED to motion makes it particularly suitable for quantitative assessments in patients prone to involuntary movements.

LEVEL OF EVIDENCE

2 TECHNICAL EFFICACY: Stage 1.

Preoperative Subtyping of WHO Grade 1 Meningiomas Using a Single-Shot Ultrafast MR T2 Mapping

BACKGROUND

Meningioma subtype is crucial in treatment planning and prognosis delineation, for grade 1 meningiomas. T2 relaxometry could provide detailed microscopic information but is often limited by long scanning times.

PURPOSE

To investigate the potential of T2 maps derived from multiple overlapping-echo detachment imaging (MOLED) for predicting meningioma subtypes and Ki-67 index, and to compare the diagnostic efficiency of two different region-of-interest (ROI) placements (whole-tumor and contrast-enhanced, respectively).

STUDY TYPE

Prospective.

PHANTOM/SUBJECTS

A phantom containing 11 tubes of MnCl2 at different concentrations, eight healthy volunteers, and 75 patients with grade 1 meningioma.

FIELD STRENGTH/SEQUENCE

3 T scanner. MOLED, T2-weighted spin-echo sequence, T2-dark-fluid sequence, and postcontrast T1-weighted gradient echo sequence.

ASSESSMENT

Two ROIs were delineated: the whole-tumor area (ROI1) and contrast-enhanced area (ROI2). Histogram parameters were extracted from T2 maps. Meningioma subtypes and Ki-67 index were reviewed by a neuropathologist according to the 2021 classification criteria.

STATISTICAL TESTS

Linear regression, Bland-Altman analysis, Pearson's correlation analysis, independent t test, Mann-Whitney U test, Kruskal-Wallis test with Bonferroni correction, and multivariate logistic regression analysis with the P-value significance level of 0.05.

RESULTS

The MOLED T2 sequence demonstrated excellent accuracy for phantoms and volunteers (Meandiff = -1.29%, SDdiff = 1.25% and Meandiff = 0.36%, SDdiff = 2.70%, respectively), and good repeatability for volunteers (average coefficient of variance = 1.13%; intraclass correlation coefficient = 0.877). For both ROI1 and ROI2, T2 variance had the highest area under the curves (area under the ROC curve = 0.768 and 0.761, respectively) for meningioma subtyping. There was no significant difference between the two ROIs (P = 0.875). Significant correlations were observed between T2 parameters and Ki-67 index (r = 0.237-0.374).

DATA CONCLUSION

MOLED T2 maps can effectively differentiate between meningothelial, fibrous, and transitional meningiomas. Moreover, T2 histogram parameters were significantly correlated with the Ki-67 index.

LEVEL OF EVIDENCE

1 TECHNICAL EFFICACY: Stage 2.

Knowledge-driven deep learning for fast MR imaging: Undersampled MR image reconstruction from supervised to un-supervised learning

Deep learning (DL) has emerged as a leading approach in accelerating MRI. It employs deep neural networks to extract knowledge from available datasets and then applies the trained networks to reconstruct accurate images from limited measurements. Unlike natural image restoration problems, MRI involves physics-based imaging processes, unique data properties, and diverse imaging tasks. This domain knowledge needs to be integrated with data-driven approaches. Our review will introduce the significant challenges faced by such knowledge-driven DL approaches in the context of fast MRI along with several notable solutions, which include learning neural networks and addressing different imaging application scenarios. The traits and trends of these techniques have also been given which have shifted from supervised learning to semi-supervised learning, and finally, to unsupervised learning methods. In addition, MR vendors' choices of DL reconstruction have been provided along with some discussions on open questions and future directions, which are critical for the reliable imaging systems.

FlexDTI: flexible diffusion gradient encoding scheme-based highly efficient diffusion tensor imaging using deep learning

Objective. Most deep neural network-based diffusion tensor imaging methods require the diffusion gradients' number and directions in the data to be reconstructed to match those in the training data. This work aims to develop and evaluate a novel dynamic-convolution-based method called FlexDTI for highly efficient diffusion tensor reconstruction with flexible diffusion encoding gradient scheme.Approach. FlexDTI was developed to achieve high-quality DTI parametric mapping with flexible number and directions of diffusion encoding gradients. The method used dynamic convolution kernels to embed diffusion gradient direction information into feature maps of the corresponding diffusion signal. Furthermore, it realized the generalization of a flexible number of diffusion gradient directions by setting the maximum number of input channels of the network. The network was trained and tested using datasets from the Human Connectome Project and local hospitals. Results from FlexDTI and other advanced tensor parameter estimation methods were compared.Main results. Compared to other methods, FlexDTI successfully achieves high-quality diffusion tensor-derived parameters even if the number and directions of diffusion encoding gradients change. It reduces normalized root mean squared error by about 50% on fractional anisotropy and 15% on mean diffusivity, compared with the state-of-the-art deep learning method with flexible diffusion encoding gradient scheme.Significance. FlexDTI can well learn diffusion gradient direction information to achieve generalized DTI reconstruction with flexible diffusion gradient scheme. Both flexibility and reconstruction quality can be taken into account in this network.

Machine learning-based amide proton transfer imaging using partially synthetic training data

PURPOSE

Machine learning (ML) has been increasingly used to quantify CEST effect. ML models are typically trained using either measured data or fully simulated data. However, training with measured data often lacks sufficient training data, whereas training with fully simulated data may introduce bias because of limited simulations pools. This study introduces a new platform that combines simulated and measured components to generate partially synthetic CEST data, and to evaluate its feasibility for training ML models to predict amide proton transfer (APT) effect.

METHODS

Partially synthetic CEST signals were created using an inverse summation of APT effects from simulations and the other components from measurements. Training data were generated by varying APT simulation parameters and applying scaling factors to adjust the measured components, achieving a balance between simulation flexibility and fidelity. First, tissue-mimicking CEST signals along with ground truth information were created using multiple-pool model simulations to validate this method. Second, an ML model was trained individually on partially synthetic data, in vivo data, and fully simulated data, to predict APT effect in rat brains bearing 9 L tumors.

RESULTS

Experiments on tissue-mimicking data suggest that the ML method using the partially synthetic data is accurate in predicting APT. In vivo experiments suggest that our method provides more accurate and robust prediction than the training using in vivo data and fully synthetic data.

CONCLUSION

Partially synthetic CEST data can address the challenges in conventional ML methods.

A model-based MR parameter mapping network robust to substantial variations in acquisition settings

Deep learning methods show great potential for the efficient and precise estimation of quantitative parameter maps from multiple magnetic resonance (MR) images. Current deep learning-based MR parameter mapping (MPM) methods are mostly trained and tested using data with specific acquisition settings. However, scan protocols usually vary with centers, scanners, and studies in practice. Thus, deep learning methods applicable to MPM with varying acquisition settings are highly required but still rarely investigated. In this work, we develop a model-based deep network termed MMPM-Net for robust MPM with varying acquisition settings. A deep learning-based denoiser is introduced to construct the regularization term in the nonlinear inversion problem of MPM. The alternating direction method of multipliers is used to solve the optimization problem and then unrolled to construct MMPM-Net. The variation in acquisition parameters can be addressed by the data fidelity component in MMPM-Net. Extensive experiments are performed on R2 mapping and R1 mapping datasets with substantial variations in acquisition settings, and the results demonstrate that the proposed MMPM-Net method outperforms other state-of-the-art MR parameter mapping methods both qualitatively and quantitatively.

A spatially adaptive regularization based three-dimensional reconstruction network for quantitative susceptibility mapping

Objective.Quantitative susceptibility mapping (QSM) is a new imaging technique for non-invasive characterization of the composition and microstructure ofin vivotissues, and it can be reconstructed from local field measurements by solving an ill-posed inverse problem. Even for deep learning networks, it is not an easy task to establish an accurate quantitative mapping between two physical quantities of different units, i.e. field shift in Hz and susceptibility value in ppm for QSM.Approach. In this paper, we propose a spatially adaptive regularization based three-dimensional reconstruction network SAQSM. A spatially adaptive module is specially designed and a set of them at different resolutions are inserted into the network decoder, playing a role of cross-modality based regularization constraint. Therefore, the exact information of both field and magnitude data is exploited to adjust the scale and shift of feature maps, and thus any information loss or deviation occurred in previous layers could be effectively corrected. The network encoding has a dynamic perceptual initialization, which enables the network to overcome receptive field intervals and also strengthens its ability to detect features of various sizes.Main results. Experimental results on the brain data of healthy volunteers, clinical hemorrhage and simulated phantom with calcification demonstrate that SAQSM can achieve more accurate reconstruction with less susceptibility artifacts, while perform well on the stability and generalization even for severe lesion areas.Significance. This proposed framework may provide a valuable paradigm to quantitative mapping or multimodal reconstruction.

Intravoxel incoherent motion magnetic resonance imaging reconstruction from highly under-sampled diffusion-weighted PROPELLER acquisition data via physics-informed residual feedback unrolled network

Objective. The acquisition of diffusion-weighted images for intravoxel incoherent motion (IVIM) imaging is time consuming. This work aims to accelerate the scan through a highly under-sampling diffusion-weighted turbo spin echo PROPELLER (DW-TSE-PROPELLER) scheme and to develop a reconstruction method for accurate IVIM parameter mapping from the under-sampled data.Approach.The proposed under-sampling DW-TSE-PROPELLER scheme for IVIM imaging is that a few blades perb-value are acquired and rotated along theb-value dimension to cover high-frequency information. A physics-informed residual feedback unrolled network (PIRFU-Net) is proposed to directly estimate distortion-free and artifact-free IVIM parametric maps (i.e., the perfusion-free diffusion coefficientDand the perfusion fractionf) from highly under-sampled DW-TSE-PROPELLER data. PIRFU-Net used an unrolled convolution network to explore data redundancy in the k-q space to remove under-sampling artifacts. An empirical IVIM physical constraint was incorporated into the network to ensure that the signal evolution curves along theb-value follow a bi-exponential decay. The residual between the realistic and estimated measurements was fed into the network to refine the parametric maps. Meanwhile, the use of synthetic training data eliminated the need for genuine DW-TSE-PROPELLER data.Main results.The experimental results show that the DW-TSE-PROPELLER acquisition was six times faster than full k-space coverage PROPELLER acquisition and within a clinically acceptable time. Compared with the state-of-the-art methods, the distortion-freeDandfmaps estimated by PIRFU-Net were more accurate and had better-preserved tissue boundaries on a simulated human brain and realistic phantom/rat brain/human brain data.Significance.Our proposed method greatly accelerates IVIM imaging. It is capable of directly and simultaneously reconstructing distortion-free, artifact-free, and accurateDandfmaps from six-fold under-sampled DW-TSE-PROPELLER data.

Free-breathing and instantaneous abdominal T2 mapping via single-shot multiple overlapping-echo acquisition and deep learning reconstruction

OBJECTIVES

To develop a real-time abdominal T₂ mapping method without requiring breath-holding or respiratory-gating.

METHODS

The single-shot multiple overlapping-echo detachment (MOLED) pulse sequence was employed to achieve free-breathing T₂ mapping of the abdomen. Deep learning was used to untangle the non-linear relationship between the MOLED signal and T₂ mapping. A synthetic data generation flow based on Bloch simulation, modality synthesis, and randomization was proposed to overcome the inadequacy of real-world training set.

RESULTS

The results from simulation and in vivo experiments demonstrated that our method could deliver high-quality T₂ mapping. The average NMSE and R² values of linear regression in the digital phantom experiments were 0.0178 and 0.9751. Pearson's correlation coefficient between our predicted T₂ and reference T₂ in the phantom experiments was 0.9996. In the measurements for the patients, real-time capture of the T₂ value changes of various abdominal organs before and after contrast agent injection was realized. A total of 33 focal liver lesions were detected in the group, and the mean and standard deviation of T₂ values were 141.1 ± 50.0 ms for benign and 63.3 ± 16.0 ms for malignant lesions. The coefficients of variance in a test-retest experiment were 2.9%, 1.2%, 0.9%, 3.1%, and 1.8% for the liver, kidney, gallbladder, spleen, and skeletal muscle, respectively.

CONCLUSIONS

Free-breathing abdominal T₂ mapping is achieved in about 100 ms on a clinical MRI scanner. The work paved the way for the development of real-time dynamic T₂ mapping in the abdomen.

KEY POINTS

• MOLED achieves free-breathing abdominal T₂ mapping in about 100 ms, enabling real-time capture of T₂ value changes due to CA injection in abdominal organs. • Synthetic data generation flow mitigates the issue of lack of sizable abdominal training datasets.

Rapid high-fidelity T 2 * mapping using single-shot overlapping-echo acquisition and deep learning reconstruction

PURPOSE

To develop and evaluate a single-shot quantitative MRI technique called GRE-MOLED (gradient-echo multiple overlapping-echo detachment) for rapid T 2 * $$ {T}_2^{\ast } $$ mapping.

METHODS

In GRE-MOLED, multiple echoes with different TEs are generated and captured in a single shot of the k-space through MOLED encoding and EPI readout. A deep neural network, trained by synthetic data, was employed for end-to-end parametric mapping from overlapping-echo signals. GRE-MOLED uses pure GRE acquisition with a single echo train to deliver T 2 * $$ {T}_2^{\ast } $$ maps less than 90 ms per slice. The self-registered B₀ information modulated in image phase was utilized for distortion-corrected parametric mapping. The proposed method was evaluated in phantoms, healthy volunteers, and task-based FMRI experiments.

RESULTS

The quantitative results of GRE-MOLED T 2 * $$ {T}_2^{\ast } $$ mapping demonstrated good agreement with those obtained from the multi-echo GRE method (Pearson's correlation coefficient = 0.991 and 0.973 for phantom and in vivo brains, respectively). High intrasubject repeatability (coefficient of variation <1.0%) were also achieved in scan-rescan test. Enabled by deep learning reconstruction, GRE-MOLED showed excellent robustness to geometric distortion, noise, and random subject motion. Compared to the conventional FMRI approach, GRE-MOLED also achieved a higher temporal SNR and BOLD sensitivity in task-based FMRI.

CONCLUSION

GRE-MOLED is a new real-time technique for T 2 * $$ {T}_2^{\ast } $$ quantification with high efficiency and quality, and it has the potential to be a better quantitative BOLD detection method.

One-Dimensional Deep Low-Rank and Sparse Network for Accelerated MRI

Deep learning has shown astonishing performance in accelerated magnetic resonance imaging (MRI). Most state-of-the-art deep learning reconstructions adopt the powerful convolutional neural network and perform 2D convolution since many magnetic resonance images or their corresponding k-space are in 2D. In this work, we present a new approach that explores the 1D convolution, making the deep network much easier to be trained and generalized. We further integrate the 1D convolution into the proposed deep network, named as One-dimensional Deep Low-rank and Sparse network (ODLS), which unrolls the iteration procedure of a low-rank and sparse reconstruction model. Extensive results on in vivo knee and brain datasets demonstrate that, the proposed ODLS is very suitable for the case of limited training subjects and provides improved reconstruction performance than state-of-the-art methods both visually and quantitatively. Additionally, ODLS also shows nice robustness to different undersampling scenarios and some mismatches between the training and test data. In summary, our work demonstrates that the 1D deep learning scheme is memory-efficient and robust in fast MRI.

Single-shot T2 mapping via multi-echo-train multiple overlapping-echo detachment planar imaging and multitask deep learning

BACKGROUND

Quantitative magnetic resonance imaging provides robust biomarkers in clinics. Nevertheless, the lengthy scan time reduces imaging throughput and increases the susceptibility of imaging results to motion. In this context, a single-shot T₂ mapping method based on multiple overlapping-echo detachment (MOLED) planar imaging was presented, but the relatively small echo time range limits its accuracy, especially in tissues with large T₂ .

PURPOSE

In this work we proposed a novel single-shot method, Multi-Echo-Train Multiple OverLapping-Echo Detachment (METMOLED) planar imaging, to accommodate a large range of T₂ quantification without additional measurements to rectify signal degeneration arisen from refocusing pulse imperfection.

METHODS

Multiple echo-train techniques were integrated into the MOLED sequence to capture larger TE information. Maps of T₂ , B₁ , and spin density were reconstructed synchronously from acquired METMOLED data via multitask deep learning. A typical U-Net was trained with 3000/600 synthetic data with geometric/brain patterns to learn the mapping relationship between METMOLED signals and quantitative maps. The refocusing pulse imperfection was settled through the inherent information of METMOLED data and auxiliary tasks.

RESULTS

Experimental results on the digital brain (structural similarity (SSIM) index = 0.975/0.991/0.988 for MOLED/METMOLED-2/METMOLED-3, hyphenated number denotes the number of echo-trains), physical phantom (the slope of linear fitting with reference T₂ map = 1.047/1.017/1.006 for MOLED/METMOLED-2/METMOLED-3), and human brain (Pearson's correlation coefficient (PCC) = 0.9581/0.9760/0.9900 for MOLED/METMOLED-2/METMOLED-3) demonstrated that the METMOLED improved the quantitative accuracy and the tissue details in contrast to the MOLED. These improvements were more pronounced in tissues with large T₂ and in application scenarios with high temporal resolution (PCC = 0.8692/0.9465/0.9743 for MOLED/METMOLED-2/METMOLED-3). Moreover, the METMOLED could rectify the signal deviations induced by the non-ideal slice profiles of refocusing pulses without additional measurements. A preliminary measurement also demonstrated that the METMOLED is highly repeatable (mean coefficient of variation (CV) = 1.65%).

CONCLUSIONS

METMOLED breaks the restriction of echo-train length to TE and implements unbiased T₂ estimates in an extensive range. Furthermore, it corrects the effect of refocusing pulse inaccuracy without additional measurements or signal post-processing, thus retaining its single-shot characteristic. This technique would be beneficial for accurate T₂ quantification.

Single-shot multi-parametric mapping based on multiple overlapping-echo detachment (MOLED) imaging

Multi-parametric quantitative magnetic resonance imaging (mqMRI) allows the characterization of multiple tissue properties non-invasively and has shown great potential to enhance the sensitivity of MRI measurements. However, real-time mqMRI during dynamic physiological processes or general motions remains challenging. To overcome this bottleneck, we propose a novel mqMRI technique based on multiple overlapping-echo detachment (MOLED) imaging, termed MQMOLED, to enable mqMRI in a single shot. In the data acquisition of MQMOLED, multiple MR echo signals with different multi-parametric weightings and phase modulations are generated and acquired in the same k-space. The k-space data is Fourier transformed and fed into a well-trained neural network for the reconstruction of multi-parametric maps. We demonstrated the accuracy and repeatability of MQMOLED in simultaneous mapping apparent proton density (APD) and any two parameters among T₂, T₂*, and apparent diffusion coefficient (ADC) in 130-170 ms. The abundant information delivered by the multiple overlapping-echo signals in MQMOLED makes the technique potentially robust to system imperfections, such as inhomogeneity of static magnetic field or radiofrequency field. Benefitting from the single-shot feature, MQMOLED exhibits a strong motion tolerance to the continuous movements of subjects. For the first time, it captured the synchronous changes of ADC, T₂, and T₁-weighted APD in contrast-enhanced perfusion imaging on patients with brain tumors, providing additional information about vascular density to the hemodynamic parametric maps. We expect that MQMOLED would promote the development of mqMRI technology and greatly benefit the applications of mqMRI, including therapeutics and analysis of metabolic/functional processes.

A simultaneous multi-slice T2 mapping framework based on overlapping-echo detachment planar imaging and deep learning reconstruction

PURPOSE

Quantitative MRI (qMRI) is of great importance to clinical medicine and scientific research. However, most qMRI techniques are time-consuming and sensitive to motion, especially when a large 3D volume is imaged. To accelerate the acquisition, a framework is proposed to realize reliable simultaneous multi-slice T₂ mapping.

METHODS

The simultaneous multi-slice T₂ mapping framework is based on overlapping-echo detachment (OLED) planar imaging (dubbed SMS-OLED). Multi-slice overlapping-echo signals were generated by multiple excitation pulses together with echo-shifting gradients. The signals were excited and acquired with a single-channel coil. U-Net was used to reconstruct T₂ maps from the acquired overlapping-echo image.

RESULTS

Single-shot double-slice and two-shot triple-slice SMS-OLED scan schemes were designed according to the framework for evaluation. Simulations, water phantom, and in vivo rat brain experiments were carried out. Overlapping-echo signals were acquired, and T₂ maps were reconstructed and compared with references. The results demonstrate the superior performance of our method.

CONCLUSION

Two slices of T₂ maps can be obtained in a single shot within hundreds of milliseconds. Higher quality multi-slice T₂ maps can be obtained via multiple shots. SMS-OLED provides a lower specific absorption rate scheme compared with conventional SMS methods with a coil with only a single receiver channel. The new method is of potential in dynamic qMRI and functional qMRI where temporal resolution is vital.

Physics-based reconstruction methods for magnetic resonance imaging

Conventional magnetic resonance imaging (MRI) is hampered by long scan times and only qualitative image contrasts that prohibit a direct comparison between different systems. To address these limitations, model-based reconstructions explicitly model the physical laws that govern the MRI signal generation. By formulating image reconstruction as an inverse problem, quantitative maps of the underlying physical parameters can then be extracted directly from efficiently acquired k-space signals without intermediate image reconstruction-addressing both shortcomings of conventional MRI at the same time. This review will discuss basic concepts of model-based reconstructions and report on our experience in developing several model-based methods over the last decade using selected examples that are provided complete with data and code. This article is part of the theme issue 'Synergistic tomographic image reconstruction: part 1'.

pFISTA-SENSE-ResNet for parallel MRI reconstruction

Magnetic resonance imaging has been widely applied in clinical diagnosis. However, it is limited by its long data acquisition time. Although the imaging can be accelerated by sparse sampling and parallel imaging, achieving promising reconstructed images with a fast computation speed remains a challenge. Recently, deep learning methods have attracted a lot of attention for encouraging reconstruction results, but they are lack of proper interpretability for neural networks. In this work, in order to enable high-quality image reconstruction for the parallel magnetic resonance imaging, we design the network structure from the perspective of sparse iterative reconstruction and enhance it with the residual structure. Experimental results on a public knee dataset indicate that, as compared with the state-of-the-art deep learning-based and optimization-based methods, the proposed network achieves lower error in reconstruction and is more robust under different samplings.

Fast chemical exchange saturation transfer imaging based on PROPELLER acquisition and deep neural network reconstruction

PURPOSE

To develop a method for fast chemical exchange saturation transfer (CEST) imaging.

METHODS

The periodically rotated overlapping parallel lines enhanced reconstruction (PROPELLER) sampling scheme was introduced to shorten the acquisition time. Deep neural network was employed to reconstruct CEST contrast images. Numerical simulation and experiments on a creatine phantom, hen egg, and in vivo tumor rat brain were performed to test the feasibility of this method.

RESULTS

The results from numerical simulation and experiments show that there is no significant difference between reference images and CEST-PROPELLER reconstructed images under an acceleration factor of 8.

CONCLUSION

Although the deep neural network is trained entirely on synthesized data, it works well on reconstructing experimental data. The proof of concept study demonstrates that the combination of the PROPELLER sampling scheme and the deep neural network enables considerable acceleration of saturated image acquisition and may find applications in CEST MRI.

Rising role of artificial intelligence in image reconstruction for biomedical imaging

In this editorial, we review recent progress on the applications of artificial intelligence (AI) in image reconstruction for biomedical imaging. Because it abandons prior information of traditional artificial design and adopts a completely data-driven mode to obtain deeper prior information via learning, AI technology plays an increasingly important role in biomedical image reconstruction. The combination of AI technology and the biomedical image reconstruction method has become a hotspot in the field. Favoring AI, the performance of biomedical image reconstruction has been improved in terms of accuracy, resolution, imaging speed, etc. We specifically focus on how to use AI technology to improve the performance of biomedical image reconstruction, and propose possible future directions in this field.