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Sieber X, Romanin L, Bastiaansen JAM, Roy CW, Yerly J, Wenz D, Richiardi J, Stuber M, van Heeswijk RB. A flexible framework for the design and optimization of water-excitation RF pulses using B-spline interpolation. Magn Reson Med 2025; 93:1896-1910. [PMID: 39652471 DOI: 10.1002/mrm.30390] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2024] [Revised: 10/11/2024] [Accepted: 11/12/2024] [Indexed: 03/12/2025]
Abstract
PURPOSE To implement a flexible framework, named HydrOptiFrame, for the design and optimization of time-efficient water-excitation (WE) RF pulses using B-spline interpolation, and to characterize their lipid suppression performance. METHODS An evolutionary optimization algorithm was used to design WE RF pulses. The algorithm minimizes a composite loss function that quantifies the fat-water contrast using Bloch equation simulations. In a first study, B-spline interpolated optimized (BSIO) pulses designed with HydrOptiFrame with durations of 1 and 0.76 ms were generated for 3 T and characterized in healthy volunteers' knees. The femoral bone marrow SNR was compared to that obtained with to 1-1 WE and lipid insensitive binomial off resonant excitation (LIBRE) pulses. In a second study, in the heart at 1.5 T, the water-fat contrast ratio and coronary artery vessel length obtained with a 2.56 ms BSIO pulse was compared to 1-1 WE and LIBRE pulses in free-running cardiovascular MR. RESULTS The 1 ms BSIO pulse resulted in higher fat suppression and lower contrast ratio (CR) in the bone marrow than the state-of-the-art pulses (4.1 ± 0.2 vs. 4.7 ± 0.4 and 4.4 ± 0.3 for the BSIO, the 1-1 WE and LIBRE respectively, p < 0.05 vs. both) at 3 T. At 1.5 T, the BSIO pulse resulted in a higher blood-epicardial fat CR (3.8 ± 1.3 vs. 1.6 ± 0.6 and 2.4 ± 1.1 for the BSIO, 1-1 WE and LIBRE, respectively, p < 0.05 vs. both) and longer traceable left coronary artery vessel length (8.7 ± 1.4 cm vs. 7.0 ± 1.0 cm [p = 0.04] and 7.5 ± 1.2 cm [p = 0.09]). CONCLUSION The HydrOptiFrame framework offers a new opportunity to design WE RF pulses that are robust to B0 inhomogeneity at multiple magnetic field strengths and for variable RF pulse durations.
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Affiliation(s)
- Xavier Sieber
- Department of Diagnostic and Interventional Radiology, Lausanne University Hospital (CHUV) and University of Lausanne (UNIL), Lausanne, Switzerland
| | - Ludovica Romanin
- Department of Diagnostic and Interventional Radiology, Lausanne University Hospital (CHUV) and University of Lausanne (UNIL), Lausanne, Switzerland
- Advanced Clinical Imaging Technology, Siemens Healthineers International AG, Lausanne, Switzerland
| | - Jessica A M Bastiaansen
- Department of Diagnostic, Interventional and Pediatric Radiology (DIPR), Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland
- Translation Imaging Center (TIC), Swiss Institute for Translational and Entrepreneurial Medicine, Bern, Switzerland
| | - Christopher W Roy
- Department of Diagnostic and Interventional Radiology, Lausanne University Hospital (CHUV) and University of Lausanne (UNIL), Lausanne, Switzerland
| | - Jérôme Yerly
- Department of Diagnostic and Interventional Radiology, Lausanne University Hospital (CHUV) and University of Lausanne (UNIL), Lausanne, Switzerland
- CIBM Center for Biomedical Imaging, Lausanne, Switzerland
| | - Daniel Wenz
- CIBM Animal Imaging and Technology, EPFL, Lausanne, Switzerland
| | - Jonas Richiardi
- Department of Diagnostic and Interventional Radiology, Lausanne University Hospital (CHUV) and University of Lausanne (UNIL), Lausanne, Switzerland
| | - Matthias Stuber
- Department of Diagnostic and Interventional Radiology, Lausanne University Hospital (CHUV) and University of Lausanne (UNIL), Lausanne, Switzerland
- CIBM Center for Biomedical Imaging, Lausanne, Switzerland
| | - Ruud B van Heeswijk
- Department of Diagnostic and Interventional Radiology, Lausanne University Hospital (CHUV) and University of Lausanne (UNIL), Lausanne, Switzerland
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Jang A, He X, Liu F. Physics-guided self-supervised learning: Demonstration for generalized RF pulse design. Magn Reson Med 2025; 93:657-672. [PMID: 39385438 PMCID: PMC11604838 DOI: 10.1002/mrm.30307] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Revised: 07/07/2024] [Accepted: 09/01/2024] [Indexed: 10/12/2024]
Abstract
PURPOSE To introduce a new method for generalized RF pulse design using physics-guided self-supervised learning (GPS), which uses the Bloch equations as the guiding physics model. THEORY AND METHODS The GPS framework consists of a neural network module and a physics module, where the physics module is a Bloch simulator for MRI applications. For RF pulse design, the neural network module maps an input target profile to an RF pulse, which is subsequently loaded into the physics module. Through the supervision of the physics module, the neural network module designs an RF pulse corresponding to the target profile. GPS was applied to design 1D selective,B 1 $$ {B}_1 $$ -insensitive, saturation, and multidimensional RF pulses, each conventionally requiring dedicated design algorithms. We further demonstrate our method's flexibility and versatility by compensating for experimental and scanner imperfections through online adaptation. RESULTS Both simulations and experiments show that GPS can design a variety of RF pulses with corresponding profiles that agree well with the target input. Despite these verifications, GPS-designed pulses have unique differences compared to conventional designs, such as achievingB 1 $$ {B}_1 $$ -insensitivity using different mechanisms and using non-sampled regions of the conventional design to lower its peak power. Experiments, both ex vivo and in vivo, further verify that it can also be used for online adaptation to correct system imperfections, such asB 0 $$ {B}_0 $$ /B 1 + $$ {B}_1^{+} $$ inhomogeneity. CONCLUSION This work demonstrates the generalizability, versatility, and flexibility of the GPS method for designing RF pulses and showcases its utility in several applications.
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Affiliation(s)
- Albert Jang
- Athinoula A. Martinos Center for Biomedical ImagingMassachusetts General HospitalCharlestownMassachusettsUSA
- Harvard Medical SchoolBostonMassachusettsUSA
| | - Xingxin He
- Athinoula A. Martinos Center for Biomedical ImagingMassachusetts General HospitalCharlestownMassachusettsUSA
- Harvard Medical SchoolBostonMassachusettsUSA
| | - Fang Liu
- Athinoula A. Martinos Center for Biomedical ImagingMassachusetts General HospitalCharlestownMassachusettsUSA
- Harvard Medical SchoolBostonMassachusettsUSA
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Ravi KS, Nandakumar G, Thomas N, Lim M, Qian E, Jimeno MM, Poojar P, Jin Z, Quarterman P, Srinivasan G, Fung M, Vaughan JT, Geethanath S. Accelerated MRI using intelligent protocolling and subject-specific denoising applied to Alzheimer's disease imaging. FRONTIERS IN NEUROIMAGING 2023; 2:1072759. [PMID: 37554641 PMCID: PMC10406274 DOI: 10.3389/fnimg.2023.1072759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Accepted: 03/15/2023] [Indexed: 08/10/2023]
Abstract
Magnetic Resonance Imaging (MR Imaging) is routinely employed in diagnosing Alzheimer's Disease (AD), which accounts for up to 60-80% of dementia cases. However, it is time-consuming, and protocol optimization to accelerate MR Imaging requires local expertise since each pulse sequence involves multiple configurable parameters that need optimization for contrast, acquisition time, and signal-to-noise ratio (SNR). The lack of this expertise contributes to the highly inefficient utilization of MRI services diminishing their clinical value. In this work, we extend our previous effort and demonstrate accelerated MRI via intelligent protocolling of the modified brain screen protocol, referred to as the Gold Standard (GS) protocol. We leverage deep learning-based contrast-specific image-denoising to improve the image quality of data acquired using the accelerated protocol. Since the SNR of MR acquisitions depends on the volume of the object being imaged, we demonstrate subject-specific (SS) image-denoising. The accelerated protocol resulted in a 1.94 × gain in imaging throughput. This translated to a 72.51% increase in MR Value-defined in this work as the ratio of the sum of median object-masked local SNR values across all contrasts to the protocol's acquisition duration. We also computed PSNR, local SNR, MS-SSIM, and variance of the Laplacian values for image quality evaluation on 25 retrospective datasets. The minimum/maximum PSNR gains (measured in dB) were 1.18/11.68 and 1.04/13.15, from the baseline and SS image-denoising models, respectively. MS-SSIM gains were: 0.003/0.065 and 0.01/0.066; variance of the Laplacian (lower is better): 0.104/-0.135 and 0.13/-0.143. The GS protocol constitutes 44.44% of the comprehensive AD imaging protocol defined by the European Prevention of Alzheimer's Disease project. Therefore, we also demonstrate the potential for AD-imaging via automated volumetry of relevant brain anatomies. We performed statistical analysis on these volumetric measurements of the hippocampus and amygdala from the GS and accelerated protocols, and found that 27 locations were in excellent agreement. In conclusion, accelerated brain imaging with the potential for AD imaging was demonstrated, and image quality was recovered post-acquisition using DL-based image denoising models.
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Affiliation(s)
- Keerthi Sravan Ravi
- Department of Biomedical Engineering, Columbia University in the City of New York, New York, NY, United States
- Columbia University Magnetic Resonance Research Center, Columbia University in the City of New York, New York, NY, United States
| | | | | | | | - Enlin Qian
- Department of Biomedical Engineering, Columbia University in the City of New York, New York, NY, United States
- Columbia University Magnetic Resonance Research Center, Columbia University in the City of New York, New York, NY, United States
| | - Marina Manso Jimeno
- Department of Biomedical Engineering, Columbia University in the City of New York, New York, NY, United States
- Columbia University Magnetic Resonance Research Center, Columbia University in the City of New York, New York, NY, United States
| | - Pavan Poojar
- Department of Diagnostic, Molecular and Interventional Radiology, Accessible MRI Laboratory, Biomedical Engineering and Imaging Institute, Icahn School of Medicine at Mt. Sinai, New York, NY, United States
| | - Zhezhen Jin
- Mailman School of Public Health, Columbia University in the City of New York, New York, NY, United States
| | | | | | - Maggie Fung
- MR Clinical Solutions, GE Healthcare, New York, NY, United States
| | - John Thomas Vaughan
- Department of Biomedical Engineering, Columbia University in the City of New York, New York, NY, United States
- Columbia University Magnetic Resonance Research Center, Columbia University in the City of New York, New York, NY, United States
| | - Sairam Geethanath
- Columbia University Magnetic Resonance Research Center, Columbia University in the City of New York, New York, NY, United States
- Department of Diagnostic, Molecular and Interventional Radiology, Accessible MRI Laboratory, Biomedical Engineering and Imaging Institute, Icahn School of Medicine at Mt. Sinai, New York, NY, United States
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Subrahmanian MV, Pavuluri K, Olivieri C, Veglia G. High-fidelity control of spin ensemble dynamics via artificial intelligence: from quantum computing to NMR spectroscopy and imaging. PNAS NEXUS 2022; 1:pgac133. [PMID: 36106184 PMCID: PMC9463062 DOI: 10.1093/pnasnexus/pgac133] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Accepted: 08/03/2022] [Indexed: 01/29/2023]
Abstract
High-fidelity control of spin ensemble dynamics is essential for many research areas, spanning from quantum computing and radio-frequency (RF) engineering to NMR spectroscopy and imaging. However, attaining robust and high-fidelity spin operations remains an unmet challenge. Using an evolutionary algorithm and artificial intelligence (AI), we designed new RF pulses with customizable spatial or temporal field inhomogeneity compensation. Compared with the standard RF shapes, the new AI-generated pulses show superior performance for bandwidth, robustness, and tolerance to field imperfections. As a benchmark, we constructed a spin entanglement operator for the weakly coupled two-spin-1/2 system of 13CHCl3, achieving high-fidelity transformations under multiple inhomogeneity sources. We then generated band-selective and ultra-broadband RF pulses typical of biomolecular NMR spectroscopy. When implemented in multipulse NMR experiments, the AI-generated pulses significantly increased the sensitivity of medium-size and large protein spectra relative to standard pulse sequences. Finally, we applied the new pulses to typical imaging experiments, showing a remarkable tolerance to changes in the RF field. These AI-generated RF pulses can be directly implemented in quantum information, NMR spectroscopy of biomolecules, magnetic resonance imaging techniques for in vivo and materials sciences.
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Affiliation(s)
| | | | - Cristina Olivieri
- Department of Biochemistry, Molecular Biology & Biophysics, University of Minnesota, Minneapolis, MN 55455, USA
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