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Dou S, Liu X, Deng Y, Chen Y, Song P, Wen T, Han B. Lightweight and wearable magnetoencephalography system based on spatially-grid constrained coils and compact magnetically shielded room. Neuroimage 2024; 300:120842. [PMID: 39304094 DOI: 10.1016/j.neuroimage.2024.120842] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2024] [Revised: 09/05/2024] [Accepted: 09/06/2024] [Indexed: 09/22/2024] Open
Abstract
Magnetoencephalography based on optically pumped magnetometers can passively detect the ultra-weak brain magnetic field signals, which has significant clinical application prospects for the diagnosis and treatment of cerebral disorders. This paper proposes a brain magnetic signal measurement method on the basis of the active-passive coupling magnetic shielding strategy and helmet-mounted detection array, which has lower cost and comparable performance over the existing ones. We first utilized the spatially-grid constrained coils and biplanar coils with proportion-integration-differentiation controller with tracking differentiator to ensure a near-zero and stable magnetic field environment with large uniform region. Subsequently, we implemented the brain magnetic signal measurement with the subject randomly moving fingers through tapping a keyboard and with the condition of opening and closing the eyes. Effectively induced brain magnetic signals were detected at the motor functional area and occipital lobe area in the two experiments, respectively. The proposed method will contribute to the development of functional brain imaging.
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Affiliation(s)
- Shuai Dou
- School of Instrumentation and Optoelectronics Engineering, Beihang University, Beijing 100191, China; Ningbo Institute of Technology, Beihang University, Ningbo 315800, China; Institute of Large-scale Scientific Facility and Centre for Zero Magnetic Field Science, Beihang University, Beijing 100191, China
| | - Xikai Liu
- Ningbo Institute of Technology, Beihang University, Ningbo 315800, China; Zhejiang Engineering Research Center of Precision Electromagnetic Control Technology and Equipment, Ningbo 315800, China.
| | - Ya Deng
- Ningbo Institute of Technology, Beihang University, Ningbo 315800, China; Zhejiang Engineering Research Center of Precision Electromagnetic Control Technology and Equipment, Ningbo 315800, China.
| | - Yimin Chen
- School of Instrumentation and Optoelectronics Engineering, Beihang University, Beijing 100191, China
| | - Pengfei Song
- Ningbo Institute of Technology, Beihang University, Ningbo 315800, China; Zhejiang Engineering Research Center of Precision Electromagnetic Control Technology and Equipment, Ningbo 315800, China
| | - Tong Wen
- School of Instrumentation and Optoelectronics Engineering, Beihang University, Beijing 100191, China; Ningbo Institute of Technology, Beihang University, Ningbo 315800, China
| | - Bangcheng Han
- School of Instrumentation and Optoelectronics Engineering, Beihang University, Beijing 100191, China; Institute of Large-scale Scientific Facility and Centre for Zero Magnetic Field Science, Beihang University, Beijing 100191, China
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Zhang T, Liu Y, Ma E, Peng B, Aarabi A, Zhang S, Hu Y, Xiang J, Dai Y. Flexible-Center Hat Complete Electrode Model for EEG Forward Problem. IEEE Trans Biomed Eng 2024; 71:2287-2299. [PMID: 38354081 DOI: 10.1109/tbme.2024.3365803] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2024]
Abstract
OBJECTIVE This study aims to develop a more realistic electrode model by incorporating the non-uniform distribution of electrode contact conductance (ECC) and the shunting effects, to accurately solve EEG forward problem (FP). METHODS Firstly, a hat function is introduced to construct a more realistic hat-shaped distribution (HD) for ECC. Secondly, this hat function is modified by applying two parameters - offset ratio and offset direction - to account for the variability in ECC's center and to develop the flexible-center HD (FCHD). Finally, by integrating this FCHD into the complete electrode model (CEM) with the shunting effects, a novel flexible-center hat complete electrode model (FCH-CEM) is proposed and used to solve FP. RESULTS Simulation experiments using a realistic head model demonstrate the necessity of FCH-CEM and its potential to improve the accuracy of the FP solution compared to current models, i.e., the point electrode model (PEM) and CEM. And compared to PEM, it has better performance under coarse mesh conditions (2 mm). Further experiments indicate the significance of considering shunting effects, as ignoring them results in larger errors than coarse mesh when the average contact conductance is large (101S/m2). CONCLUSION The proposed FCH-CEM has better accuracy and performance than PEM and complements CEM in finer meshes, making it necessary for coarse meshes. SIGNIFICANCE This study proposes a novel model that enhances electrode modeling and FP accuracy, and provides new ideas and methods for future research.
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Hirata A, Niitsu M, Phang CR, Kodera S, Kida T, Rashed EA, Fukunaga M, Sadato N, Wasaka T. High-resolution EEG source localization in personalized segmentation-free head model with multi-dipole fitting. Phys Med Biol 2024; 69:055013. [PMID: 38306964 DOI: 10.1088/1361-6560/ad25c3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Accepted: 02/02/2024] [Indexed: 02/04/2024]
Abstract
Objective. Electroencephalograms (EEGs) are often used to monitor brain activity. Several source localization methods have been proposed to estimate the location of brain activity corresponding to EEG readings. However, only a few studies evaluated source localization accuracy from measured EEG using personalized head models in a millimeter resolution. In this study, based on a volume conductor analysis of a high-resolution personalized human head model constructed from magnetic resonance images, a finite difference method was used to solve the forward problem and to reconstruct the field distribution.Approach. We used a personalized segmentation-free head model developed using machine learning techniques, in which the abrupt change of electrical conductivity occurred at the tissue interface is suppressed. Using this model, a smooth field distribution was obtained to address the forward problem. Next, multi-dipole fitting was conducted using EEG measurements for each subject (N= 10 male subjects, age: 22.5 ± 0.5), and the source location and electric field distribution were estimated.Main results.For measured somatosensory evoked potential for electrostimulation to the wrist, a multi-dipole model with lead field matrix computed with the volume conductor model was found to be superior than a single dipole model when using personalized segmentation-free models (6/10). The correlation coefficient between measured and estimated scalp potentials was 0.89 for segmentation-free head models and 0.71 for conventional segmented models. The proposed method is straightforward model development and comparable localization difference of the maximum electric field from the target wrist reported using fMR (i.e. 16.4 ± 5.2 mm) in previous study. For comparison, DUNEuro based on sLORETA was (EEG: 17.0 ± 4.0 mm). In addition, somatosensory evoked magnetic fields obtained by Magnetoencephalography was 25.3 ± 8.5 mm using three-layer sphere and sLORETA.Significance. For measured EEG signals, our procedures using personalized head models demonstrated that effective localization of the somatosensory cortex, which is located in a non-shallower cortex region. This method may be potentially applied for imaging brain activity located in other non-shallow regions.
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Affiliation(s)
- Akimasa Hirata
- Department of Electrical and Mechanical Engineering, Nagoya Institute of Technology, Nagoya 466-8555, Japan
- Center of Biomedical Physics and Information Technology, Nagoya Institute of Technology, Nagoya 466-8555, Japan
| | - Masamune Niitsu
- Department of Electrical and Mechanical Engineering, Nagoya Institute of Technology, Nagoya 466-8555, Japan
| | - Chun Ren Phang
- Department of Electrical and Mechanical Engineering, Nagoya Institute of Technology, Nagoya 466-8555, Japan
- Center of Biomedical Physics and Information Technology, Nagoya Institute of Technology, Nagoya 466-8555, Japan
| | - Sachiko Kodera
- Department of Electrical and Mechanical Engineering, Nagoya Institute of Technology, Nagoya 466-8555, Japan
- Center of Biomedical Physics and Information Technology, Nagoya Institute of Technology, Nagoya 466-8555, Japan
| | - Tetsuo Kida
- Department of Functioning and Disability, Institute for Developmental Research, Aichi Developmental Disability Center, Kasugai 480-0392, Japan
| | - Essam A Rashed
- Graduate School of Information Science, University of Hyogo, Kobe 650-0047, Japan
| | - Masaki Fukunaga
- Division of Cerebral Integration, National Institute for Physiological Sciences, Okazaki, Aichi 444-8585, Japan
| | - Norihiro Sadato
- Division of Cerebral Integration, National Institute for Physiological Sciences, Okazaki, Aichi 444-8585, Japan
| | - Toshiaki Wasaka
- Department of Electrical and Mechanical Engineering, Nagoya Institute of Technology, Nagoya 466-8555, Japan
- Center of Biomedical Physics and Information Technology, Nagoya Institute of Technology, Nagoya 466-8555, Japan
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Koshev N, Kapralov P, Evstigneeva S, Lutsenko O, Shilina P, Zharkov M, Pyataev N, Darwish A, Timin A, Ostras M, Radchenko I, Sukhorukov G, Vetoshko P. Yttrium-Iron Garnet Film Magnetometer for Registration of Magnetic Nano- and Submicron Particles: In Vitro and In Vivo Studies. IEEE Trans Biomed Eng 2024; 71:122-129. [PMID: 37506012 DOI: 10.1109/tbme.2023.3293553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/30/2023]
Abstract
In the current article, we present a new kind of magnetometer for quantitative detection of magnetic objects (magnetic nano- and submicron particles) in biological fluids and tissues. The sensor is based on yttrium-iron garnet film with optical signal registration system. Inheriting the working principle of a fluxgate magnetometers, the sensor works at a room-temperature, its wide dynamic range allows the measurements in an unshielded environment. A small size of sensitive element combined with a short recovery time after the excitation coils are off provide us with a potentially high spatial and temporal resolution of measurements. We show the feasibility of the developed devices by sensing the remanent magnetization of magnetic nanoparticles (MNPs) both in vitro (test tubes, dry MNPs) and in vivo (local injection of the MNPs into mice).
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Skidchenko E, Butorina A, Ostras M, Vetoshko P, Kuzmichev A, Yavich N, Malovichko M, Koshev N. Yttrium-Iron Garnet Magnetometer in MEG: Advance towards Multi-Channel Arrays. SENSORS (BASEL, SWITZERLAND) 2023; 23:s23094256. [PMID: 37177460 PMCID: PMC10181089 DOI: 10.3390/s23094256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Revised: 04/17/2023] [Accepted: 04/23/2023] [Indexed: 05/15/2023]
Abstract
Recently, a new kind of sensor applicable in magnetoencephalography (MEG) has been presented: a solid-state yttrium-iron garnet magnetometer (YIGM). The feasibility of yttrium-iron garnet magnetometers (YIGMs) was demonstrated in an alpha-rhythm registration experiment. In this paper, we propose the analysis of lead-field matrices for different possible multi-channel on-scalp sensor layouts using YIGMs with respect to information theory. Real noise levels of the new sensor were used to compute signal-to-noise ratio (SNR) and total information capacity (TiC), and compared with corresponding metrics that can be obtained with well-established MEG systems based on superconducting quantum interference devices (SQUIDs) and optically pumped magnetometers (OPMs). The results showed that due to YIGMs' proximity to the subject's scalp, they outperform SQUIDs and OPMs at their respective noise levels in terms of SNR and TiC. However, the current noise levels of YIGM sensors are unfortunately insufficient for constructing a multichannel YIG-MEG system. This simulation study provides insight into the direction for further development of YIGM sensors to create a multi-channel MEG system, namely, by decreasing the noise levels of sensors.
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Affiliation(s)
| | - Anna Butorina
- CNBR, Skolkovo Institute of Science and Technology, 121205 Moscow, Russia
| | - Maxim Ostras
- M-Granat, Russian Quantum Center, 121205 Moscow, Russia
| | - Petr Vetoshko
- M-Granat, Russian Quantum Center, 121205 Moscow, Russia
- Laboratory of Magnetic Phenomena in Microelectronics, Kotelnikov Institute of Radioengineering and Electronics of RAS, 125009 Moscow, Russia
| | | | - Nikolay Yavich
- CNBR, Skolkovo Institute of Science and Technology, 121205 Moscow, Russia
- Computational Geophysics Lab, Moscow Institute of Physics and Technology, 141701 Dolgoprudny, Russia
| | - Mikhail Malovichko
- Computational Geophysics Lab, Moscow Institute of Physics and Technology, 141701 Dolgoprudny, Russia
| | - Nikolay Koshev
- CNBR, Skolkovo Institute of Science and Technology, 121205 Moscow, Russia
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Ma S, Wang C, Khan A, Liu L, Dalgleish J, Kiryluk K, He Z, Ionita-Laza I. BIGKnock: fine-mapping gene-based associations via knockoff analysis of biobank-scale data. Genome Biol 2023; 24:24. [PMID: 36782330 PMCID: PMC9926792 DOI: 10.1186/s13059-023-02864-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Accepted: 01/23/2023] [Indexed: 02/15/2023] Open
Abstract
We propose BIGKnock (BIobank-scale Gene-based association test via Knockoffs), a computationally efficient gene-based testing approach for biobank-scale data, that leverages long-range chromatin interaction data, and performs conditional genome-wide testing via knockoffs. BIGKnock can prioritize causal genes over proxy associations at a locus. We apply BIGKnock to the UK Biobank data with 405,296 participants for multiple binary and quantitative traits, and show that relative to conventional gene-based tests, BIGKnock produces smaller sets of significant genes that contain the causal gene(s) with high probability. We further illustrate its ability to pinpoint potential causal genes at [Formula: see text] of the associated loci.
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Affiliation(s)
- Shiyang Ma
- Department of Biostatistics, Columbia University, New York, NY, USA
- Clinical Research Institute, Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | - Chen Wang
- Department of Biostatistics, Columbia University, New York, NY, USA
| | - Atlas Khan
- Division of Nephrology, Department of Medicine, Vagelos College of Physicians & Surgeons, Columbia University, New York, NY, USA
| | - Linxi Liu
- Department of Statistics, University of Pittsburgh, Pittsburgh, PA, USA
| | - James Dalgleish
- Department of Biostatistics, Columbia University, New York, NY, USA
| | - Krzysztof Kiryluk
- Division of Nephrology, Department of Medicine, Vagelos College of Physicians & Surgeons, Columbia University, New York, NY, USA
| | - Zihuai He
- Quantitative Sciences Unit, Department of Medicine, Stanford University, Stanford, CA, USA
- Department of Neurology and Neurological Sciences, Stanford University, Stanford, CA, USA
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