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Teng Y, Wu K, Liu J, Li Y, Teng X. Constructing High-Order Functional Connectivity Networks With Temporal Information From fMRI Data. IEEE TRANSACTIONS ON MEDICAL IMAGING 2024; 43:4133-4145. [PMID: 38861435 DOI: 10.1109/tmi.2024.3412399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2024]
Abstract
Conducting functional connectivity analysis on functional magnetic resonance imaging (fMRI) data presents a significant and intricate challenge. Contemporary studies typically analyze fMRI data by constructing high-order functional connectivity networks (FCNs) due to their strong interpretability. However, these approaches often overlook temporal information, resulting in suboptimal accuracy. Temporal information plays a vital role in reflecting changes in blood oxygenation level-dependent signals. To address this shortcoming, we have devised a framework for extracting temporal dependencies from fMRI data and inferring high-order functional connectivity among regions of interest (ROIs). Our approach postulates that the current state can be determined by the FCN and the state at the previous time, effectively capturing temporal dependencies. Furthermore, we enhance FCN by incorporating high-order features through hypergraph-based manifold regularization. Our algorithm involves causal modeling of the dynamic brain system, and the obtained directed FC reveals differences in the flow of information under different patterns. We have validated the significance of integrating temporal information into FCN using four real-world fMRI datasets. On average, our framework achieves 12% higher accuracy than non-temporal hypergraph-based and low-order FCNs, all while maintaining a short processing time. Notably, our framework successfully identifies the most discriminative ROIs, aligning with previous research, and thereby facilitating cognitive and behavioral studies.
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Ilan Y. Free Will as Defined by the Constrained Disorder Principle: a Restricted, Mandatory, Personalized, Regulated Process for Decision-Making. Integr Psychol Behav Sci 2024; 58:1843-1875. [PMID: 38900370 PMCID: PMC11638301 DOI: 10.1007/s12124-024-09853-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/08/2024] [Indexed: 06/21/2024]
Abstract
The concept of free will has challenged physicists, biologists, philosophers, and other professionals for decades. The constrained disorder principle (CDP) is a fundamental law that defines systems according to their inherent variability. It provides mechanisms for adapting to dynamic environments. This work examines the CDP's perspective of free will concerning various free will theories. Per the CDP, systems lack intentions, and the "freedom" to select and act is built into their design. The "freedom" is embedded within the response range determined by the boundaries of the systems' variability. This built-in and self-generating mechanism enables systems to cope with perturbations. According to the CDP, neither dualism nor an unknown metaphysical apparatus dictates choices. Brain variability facilitates cognitive adaptation to complex, unpredictable situations across various environments. Human behaviors and decisions reflect an underlying physical variability in the brain and other organs for dealing with unpredictable noises. Choices are not predetermined but reflect the ongoing adaptation processes to dynamic prssu½res. Malfunctions and disease states are characterized by inappropriate variability, reflecting an inability to respond adequately to perturbations. Incorporating CDP-based interventions can overcome malfunctions and disease states and improve decision processes. CDP-based second-generation artificial intelligence platforms improve interventions and are being evaluated to augment personal development, wellness, and health.
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Affiliation(s)
- Yaron Ilan
- Faculty of Medicine, Hebrew University and Department of Medicine, Hadassah Medical Center, Jerusalem, Israel.
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Lv Z, Li J, Yao L, Guo X. Predicting resting-state brain functional connectivity from the structural connectome using the heat diffusion model: a multiple-timescale fusion method. J Neural Eng 2024; 21:026041. [PMID: 38565132 DOI: 10.1088/1741-2552/ad39a6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Accepted: 04/02/2024] [Indexed: 04/04/2024]
Abstract
Objective.Understanding the intricate relationship between structural connectivity (SC) and functional connectivity (FC) is pivotal for understanding the complexities of the human brain. To explore this relationship, the heat diffusion model (HDM) was utilized to predict FC from SC. However, previous studies using the HDM have typically predicted FC at a critical time scale in the heat kernel equation, overlooking the dynamic nature of the diffusion process and providing an incomplete representation of the predicted FC.Approach.In this study, we propose an alternative approach based on the HDM. First, we introduced a multiple-timescale fusion method to capture the dynamic features of the diffusion process. Additionally, to enhance the smoothness of the predicted FC values, we employed the Wavelet reconstruction method to maintain local consistency and remove noise. Moreover, to provide a more accurate representation of the relationship between SC and FC, we calculated the linear transformation between the smoothed FC and the empirical FC.Main results.We conducted extensive experiments in two independent datasets. By fusing different time scales in the diffusion process for predicting FC, the proposed method demonstrated higher predictive correlation compared with method considering only critical time points (Singlescale). Furthermore, compared with other existing methods, the proposed method achieved the highest predictive correlations of 0.6939±0.0079 and 0.7302±0.0117 on the two datasets respectively. We observed that the visual network at the network level and the parietal lobe at the lobe level exhibited the highest predictive correlations, indicating that the functional activity in these regions may be closely related to the direct diffusion of information between brain regions.Significance.The multiple-timescale fusion method proposed in this study provides insights into the dynamic aspects of the diffusion process, contributing to a deeper understanding of how brain structure gives rise to brain function.
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Affiliation(s)
- Zhengyuan Lv
- School of Artificial Intelligence, Beijing Normal University, Beijing 100875, People's Republic of China
| | - Jingming Li
- School of Artificial Intelligence, Beijing Normal University, Beijing 100875, People's Republic of China
| | - Li Yao
- School of Artificial Intelligence, Beijing Normal University, Beijing 100875, People's Republic of China
| | - Xiaojuan Guo
- School of Artificial Intelligence, Beijing Normal University, Beijing 100875, People's Republic of China
- Beijing Key Laboratory of Brain Imaging and Connectomics, Beijing Normal University, Beijing 100875, People's Republic of China
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Tang H, Ma G, Zhang Y, Ye K, Guo L, Liu G, Huang Q, Wang Y, Ajilore O, Leow AD, Thompson PM, Huang H, Zhan L. A comprehensive survey of complex brain network representation. META-RADIOLOGY 2023; 1:100046. [PMID: 39830588 PMCID: PMC11741665 DOI: 10.1016/j.metrad.2023.100046] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/22/2025]
Abstract
Recent years have shown great merits in utilizing neuroimaging data to understand brain structural and functional changes, as well as its relationship to different neurodegenerative diseases and other clinical phenotypes. Brain networks, derived from different neuroimaging modalities, have attracted increasing attention due to their potential to gain system-level insights to characterize brain dynamics and abnormalities in neurological conditions. Traditional methods aim to pre-define multiple topological features of brain networks and relate these features to different clinical measures or demographical variables. With the enormous successes in deep learning techniques, graph learning methods have played significant roles in brain network analysis. In this survey, we first provide a brief overview of neuroimaging-derived brain networks. Then, we focus on presenting a comprehensive overview of both traditional methods and state-of-the-art deep-learning methods for brain network mining. Major models, and objectives of these methods are reviewed within this paper. Finally, we discuss several promising research directions in this field.
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Affiliation(s)
- Haoteng Tang
- Department of Computer Science, College of Engineering and Computer Science, University of Texas Rio Grande Valley, 1201 W University Dr, Edinburg, 78539, TX, USA
| | - Guixiang Ma
- Intel Labs, 2111 NE 25th Ave, Hillsboro, 97124, OR, USA
| | - Yanfu Zhang
- Department of Electrical and Computer Engineering, Swanson School of Engineering, University of Pittsburgh, 3700 O’Hara St., Pittsburgh, 15261, PA, USA
| | - Kai Ye
- Department of Electrical and Computer Engineering, Swanson School of Engineering, University of Pittsburgh, 3700 O’Hara St., Pittsburgh, 15261, PA, USA
| | - Lei Guo
- Department of Electrical and Computer Engineering, Swanson School of Engineering, University of Pittsburgh, 3700 O’Hara St., Pittsburgh, 15261, PA, USA
| | - Guodong Liu
- Department of Electrical and Computer Engineering, Swanson School of Engineering, University of Pittsburgh, 3700 O’Hara St., Pittsburgh, 15261, PA, USA
| | - Qi Huang
- Department of Radiology, Utah Center of Advanced Imaging, University of Utah, 729 Arapeen Drive, Salt Lake City, 84108, UT, USA
| | - Yalin Wang
- School of Computing and Augmented Intelligence, Arizona State University, 699 S Mill Ave., Tempe, 85281, AZ, USA
| | - Olusola Ajilore
- Department of Psychiatry, University of Illinois Chicago, 1601 W. Taylor St., Chicago, 60612, IL, USA
| | - Alex D. Leow
- Department of Psychiatry, University of Illinois Chicago, 1601 W. Taylor St., Chicago, 60612, IL, USA
| | - Paul M. Thompson
- Department of Neurology, University of Southern California, 2001 N. Soto St., Los Angeles, 90032, CA, USA
| | - Heng Huang
- Department of Computer Science, University of Maryland, 8125 Paint Branch Dr, College Park, 20742, MD, USA
| | - Liang Zhan
- Department of Electrical and Computer Engineering, Swanson School of Engineering, University of Pittsburgh, 3700 O’Hara St., Pittsburgh, 15261, PA, USA
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