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Proost R, Heremans E, Lagae L, Van Paesschen W, De Vos M, Jansen K. Automated sleep staging on reduced channels in children with epilepsy. Front Neurol 2024; 15:1390465. [PMID: 38798709 PMCID: PMC11116721 DOI: 10.3389/fneur.2024.1390465] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Accepted: 04/15/2024] [Indexed: 05/29/2024] Open
Abstract
Objectives This study aimed to validate a sleep staging algorithm using in-hospital video-electroencephalogram (EEG) in children without epilepsy, with well-controlled epilepsy (WCE), and with drug-resistant epilepsy (DRE). Methods Overnight video-EEG, along with electrooculogram (EOG) and chin electromyogram (EMG), was recorded in children between 4 and 18 years of age. Classical sleep staging was performed manually as a ground truth. An end-to-end hierarchical recurrent neural network for sequence-to-sequence automatic sleep staging (SeqSleepNet) was used to perform automated sleep staging using three channels: C4-A1, EOG, and chin EMG. Results In 176 children sleep stages were manually scored: 47 children without epilepsy, 74 with WCE, and 55 with DRE. The 5-class sleep staging accuracy of the automatic sleep staging algorithm was 84.7% for the children without epilepsy, 83.5% for those with WCE, and 80.8% for those with DRE (Kappa of 0.79, 0.77, and 0.73 respectively). Performance per sleep stage was assessed with an F1 score of 0.91 for wake, 0.50 for N1, 0.83 for N2, 0.84 for N3, and 0.86 for rapid eye movement (REM) sleep. Conclusion We concluded that the tested algorithm has a high accuracy in children without epilepsy and with WCE. Performance in children with DRE was acceptable, but significantly lower, which could be explained by a tendency of more time spent in N1, and by abundant interictal epileptiform discharges and intellectual disability leading to less recognizable sleep stages. REM sleep time, however, significantly affected in children with DRE, can be detected reliably by the algorithm.Clinical trial registration: ClinicalTrials.gov, identifier NCT04584385.
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Affiliation(s)
- Renee Proost
- Pediatric Neurology Department, University Hospitals Leuven, KU Leuven, Leuven, Belgium
| | - Elisabeth Heremans
- Department of Electrical Engineering (ESAT), STADIUS Center for Dynamical Systems, Signal Processing and Data Analytics, KU Leuven, Leuven, Belgium
| | - Lieven Lagae
- Pediatric Neurology Department, University Hospitals Leuven, KU Leuven, Leuven, Belgium
| | - Wim Van Paesschen
- Neurology Department, University Hospitals Leuven, KU Leuven, Leuven, Belgium
| | - Maarten De Vos
- Department of Electrical Engineering (ESAT), STADIUS Center for Dynamical Systems, Signal Processing and Data Analytics, KU Leuven, Leuven, Belgium
| | - Katrien Jansen
- Pediatric Neurology Department, University Hospitals Leuven, KU Leuven, Leuven, Belgium
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2
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Oh S, Kweon YS, Shin GH, Lee SW. Association Between Sleep Quality and Deep Learning-Based Sleep Onset Latency Distribution Using an Electroencephalogram. IEEE Trans Neural Syst Rehabil Eng 2024; 32:1806-1816. [PMID: 38696294 DOI: 10.1109/tnsre.2024.3396169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/04/2024]
Abstract
To evaluate sleep quality, it is necessary to monitor overnight sleep duration. However, sleep monitoring typically requires more than 7 hours, which can be inefficient in termxs of data size and analysis. Therefore, we proposed to develop a deep learning-based model using a 30 sec sleep electroencephalogram (EEG) early in the sleep cycle to predict sleep onset latency (SOL) distribution and explore associations with sleep quality (SQ). We propose a deep learning model composed of a structure that decomposes and restores the signal in epoch units and a structure that predicts the SOL distribution. We used the Sleep Heart Health Study public dataset, which includes a large number of study subjects, to estimate and evaluate the proposed model. The proposed model estimated the SOL distribution and divided it into four clusters. The advantage of the proposed model is that it shows the process of falling asleep for individual participants as a probability graph over time. Furthermore, we compared the baseline of good SQ and SOL and showed that less than 10 minutes SOL correlated better with good SQ. Moreover, it was the most suitable sleep feature that could be predicted using early EEG, compared with the total sleep time, sleep efficiency, and actual sleep time. Our study showed the feasibility of estimating SOL distribution using deep learning with an early EEG and showed that SOL distribution within 10 minutes was associated with good SQ.
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Li Y, Chen J, Ma W, Zhao G, Fan X. MVF-SleepNet: Multi-View Fusion Network for Sleep Stage Classification. IEEE J Biomed Health Inform 2024; 28:2485-2495. [PMID: 36129857 DOI: 10.1109/jbhi.2022.3208314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Sleep stage classification is of great importance in human health monitoring and disease diagnosing. Clinically, visual-inspected classifying sleep into different stages is quite time consuming and highly relies on the expertise of sleep specialists. Many automated models for sleep stage classification have been proposed in previous studies but their performances still exist a gap to the real clinical application. In this work, we propose a novel multi-view fusion network named MVF-SleepNet based on multi-modal physiological signals of electroencephalography (EEG), electrocardiography (ECG), electrooculography (EOG), and electromyography (EMG). To capture the relationship representation among multi-modal physiological signals, we construct two views of Time-frequency images (TF images) and Graph-learned graphs (GL graphs). To learn the spectral-temporal representation from sequentially timed TF images, the combination of VGG-16 and GRU networks is utilized. To learn the spatial-temporal representation from sequentially timed GL graphs, the combination of Chebyshev graph convolution and temporal convolution networks is employed. Fusing the spectral-temporal representation and spatial-temporal representation can further boost the performance of sleep stage classification. A large number of experiment results on the publicly available datasets of ISRUC-S1 and ISRUC-S3 show that the MVF-SleepNet achieves overall accuracy of 0.821, F1 score of 0.802 and Kappa of 0.768 on ISRUC-S1 dataset, and accuracy of 0.841, F1 score of 0.828 and Kappa of 0.795 on ISRUC-S3 dataset. The MVF-SleepNet achieves competitive results on both datasets of ISRUC-S1 and ISRUC-S3 for sleep stage classification compared to the state-of-the-art baselines. The source code of MVF-SleepNet is available on Github (https://github.com/YJPai65/MVF-SleepNet).
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An P, Zhao J, Du B, Zhao W, Zhang T, Yuan Z. Amplitude-Time Dual-View Fused EEG Temporal Feature Learning for Automatic Sleep Staging. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2024; 35:6492-6506. [PMID: 36215384 DOI: 10.1109/tnnls.2022.3210384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Electroencephalogram (EEG) plays an important role in studying brain function and human cognitive performance, and the recognition of EEG signals is vital to develop an automatic sleep staging system. However, due to the complex nonstationary characteristics and the individual difference between subjects, how to obtain the effective signal features of the EEG for practical application is still a challenging task. In this article, we investigate the EEG feature learning problem and propose a novel temporal feature learning method based on amplitude-time dual-view fusion for automatic sleep staging. First, we explore the feature extraction ability of convolutional neural networks for the EEG signal from the perspective of interpretability and construct two new representation signals for the raw EEG from the views of amplitude and time. Then, we extract the amplitude-time signal features that reflect the transformation between different sleep stages from the obtained representation signals by using conventional 1-D CNNs. Furthermore, a hybrid dilation convolution module is used to learn the long-term temporal dependency features of EEG signals, which can overcome the shortcoming that the small-scale convolution kernel can only learn the local signal variation information. Finally, we conduct attention-based feature fusion for the learned dual-view signal features to further improve sleep staging performance. To evaluate the performance of the proposed method, we test 30-s-epoch EEG signal samples for healthy subjects and subjects with mild sleep disorders. The experimental results from the most commonly used datasets show that the proposed method has better sleep staging performance and has the potential for the development and application of an EEG-based automatic sleep staging system.
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Jirakittayakorn N, Wongsawat Y, Mitrirattanakul S. ZleepAnlystNet: a novel deep learning model for automatic sleep stage scoring based on single-channel raw EEG data using separating training. Sci Rep 2024; 14:9859. [PMID: 38684765 PMCID: PMC11058251 DOI: 10.1038/s41598-024-60796-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 04/26/2024] [Indexed: 05/02/2024] Open
Abstract
Numerous models for sleep stage scoring utilizing single-channel raw EEG signal have typically employed CNN and BiLSTM architectures. While these models, incorporating temporal information for sequence classification, demonstrate superior overall performance, they often exhibit low per-class performance for N1-stage, necessitating an adjustment of loss function. However, the efficacy of such adjustment is constrained by the training process. In this study, a pioneering training approach called separating training is introduced, alongside a novel model, to enhance performance. The developed model comprises 15 CNN models with varying loss function weights for feature extraction and 1 BiLSTM for sequence classification. Due to its architecture, this model cannot be trained using an end-to-end approach, necessitating separate training for each component using the Sleep-EDF dataset. Achieving an overall accuracy of 87.02%, MF1 of 82.09%, Kappa of 0.8221, and per-class F1-socres (W 90.34%, N1 54.23%, N2 89.53%, N3 88.96%, and REM 87.40%), our model demonstrates promising performance. Comparison with sleep technicians reveals a Kappa of 0.7015, indicating alignment with reference sleep stags. Additionally, cross-dataset validation and adaptation through training with the SHHS dataset yield an overall accuracy of 84.40%, MF1 of 74.96% and Kappa of 0.7785 when tested with the Sleep-EDF-13 dataset. These findings underscore the generalization potential in model architecture design facilitated by our novel training approach.
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Affiliation(s)
- Nantawachara Jirakittayakorn
- Institute for Innovative Learning, Mahidol University, Nakhon Pathom, Thailand
- Faculty of Dentistry, Mahidol University, Bangkok, Thailand
| | - Yodchanan Wongsawat
- Department of Biomedical Engineering, Faculty of Engineering, Mahidol University, Nakhon Pathom, Thailand
| | - Somsak Mitrirattanakul
- Department of Masticatory Science, Faculty of Dentistry, Mahidol University, Bangkok, Thailand.
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Radke FA, da Silva Souto CF, Pätzold W, Wolf KI. Transfer Learning for Automatic Sleep Staging Using a Pre-Gelled Electrode Grid. Diagnostics (Basel) 2024; 14:909. [PMID: 38732323 PMCID: PMC11083934 DOI: 10.3390/diagnostics14090909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Revised: 04/18/2024] [Accepted: 04/24/2024] [Indexed: 05/13/2024] Open
Abstract
Novel sensor solutions for sleep monitoring at home could alleviate bottlenecks in sleep medical care as well as enable selective or continuous observation over long periods of time and contribute to new insights in sleep medicine and beyond. Since especially in the latter case the sensor data differ strongly in signal, number and extent of sensors from the classical polysomnography (PSG) sensor technology, an automatic evaluation is essential for the application. However, the training of an automatic algorithm is complicated by the fact that the development phase of the new sensor technology, extensive comparative measurements with standardized reference systems, is often not possible and therefore only small datasets are available. In order to circumvent high system-specific training data requirements, we employ pre-training on large datasets with finetuning on small datasets of new sensor technology to enable automatic sleep phase detection for small test series. By pre-training on publicly available PSG datasets and finetuning on 12 nights recorded with new sensor technology based on a pre-gelled electrode grid to capture electroencephalography (EEG), electrooculography (EOG) and electromyography (EMG), an F1 score across all sleep phases of 0.81 is achieved (wake 0.84, N1 0.62, N2 0.81, N3 0.87, REM 0.88), using only EEG and EOG. The analysis additionally considers the spatial distribution of the channels and an approach to approximate classical electrode positions based on specific linear combinations of the new sensor grid channels.
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Affiliation(s)
- Fabian A. Radke
- Fraunhofer Institute for Digital Media Technology IDMT, Oldenburg Branch for Hearing, Speech and Audio Technology HSA, 26129 Oldenburg, Germany
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7
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Baumert M, Phan H. A perspective on automated rapid eye movement sleep assessment. J Sleep Res 2024:e14223. [PMID: 38650539 DOI: 10.1111/jsr.14223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2023] [Revised: 02/18/2024] [Accepted: 04/08/2024] [Indexed: 04/25/2024]
Abstract
Rapid eye movement sleep is associated with distinct changes in various biomedical signals that can be easily captured during sleep, lending themselves to automated sleep staging using machine learning systems. Here, we provide a perspective on the critical characteristics of biomedical signals associated with rapid eye movement sleep and how they can be exploited for automated sleep assessment. We summarise key historical developments in automated sleep staging systems, having now achieved classification accuracy on par with human expert scorers and their role in the clinical setting. We also discuss rapid eye movement sleep assessment with consumer sleep trackers and its potential for unprecedented sleep assessment on a global scale. We conclude by providing a future outlook of computerised rapid eye movement sleep assessment and the role AI systems may play.
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Affiliation(s)
- Mathias Baumert
- Discipline of Biomedical Engineering, School of Electrical and Mechanical Engineering, The University of Adelaide, Adelaide, Australia
| | - Huy Phan
- Amazon, Cambridge, Massachusetts, USA
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8
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Hammour G, Davies H, Atzori G, Della Monica C, Ravindran KKG, Revell V, Dijk DJ, Mandic DP. From Scalp to Ear-EEG: A Generalizable Transfer Learning Model for Automatic Sleep Scoring in Older People. IEEE JOURNAL OF TRANSLATIONAL ENGINEERING IN HEALTH AND MEDICINE 2024; 12:448-456. [PMID: 38765887 PMCID: PMC11100860 DOI: 10.1109/jtehm.2024.3388852] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 03/21/2024] [Accepted: 04/10/2024] [Indexed: 05/22/2024]
Abstract
OBJECTIVE Sleep monitoring has extensively utilized electroencephalogram (EEG) data collected from the scalp, yielding very large data repositories and well-trained analysis models. Yet, this wealth of data is lacking for emerging, less intrusive modalities, such as ear-EEG. METHODS AND PROCEDURES The current study seeks to harness the abundance of open-source scalp EEG datasets by applying models pre-trained on data, either directly or with minimal fine-tuning; this is achieved in the context of effective sleep analysis from ear-EEG data that was recorded using a single in-ear electrode, referenced to the ipsilateral mastoid, and developed in-house as described in our previous work. Unlike previous studies, our research uniquely focuses on an older cohort (17 subjects aged 65-83, mean age 71.8 years, some with health conditions), and employs LightGBM for transfer learning, diverging from previous deep learning approaches. RESULTS Results show that the initial accuracy of the pre-trained model on ear-EEG was 70.1%, but fine-tuning the model with ear-EEG data improved its classification accuracy to 73.7%. The fine-tuned model exhibited a statistically significant improvement (p < 0.05, dependent t-test) for 10 out of the 13 participants, as reflected by an enhanced average Cohen's kappa score (a statistical measure of inter-rater agreement for categorical items) of 0.639, indicating a stronger agreement between automated and expert classifications of sleep stages. Comparative SHAP value analysis revealed a shift in feature importance for the N3 sleep stage, underscoring the effectiveness of the fine-tuning process. CONCLUSION Our findings underscore the potential of fine-tuning pre-trained scalp EEG models on ear-EEG data to enhance classification accuracy, particularly within an older population and using feature-based methods for transfer learning. This approach presents a promising avenue for ear-EEG analysis in sleep studies, offering new insights into the applicability of transfer learning across different populations and computational techniques. CLINICAL IMPACT An enhanced ear-EEG method could be pivotal in remote monitoring settings, allowing for continuous, non-invasive sleep quality assessment in elderly patients with conditions like dementia or sleep apnea.
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Affiliation(s)
- Ghena Hammour
- Department of Electrical and Electronic EngineeringImperial College LondonSW7 2BTLondonU.K.
- U.K. Dementia Research Institute, Care Research and Technology CentreSW7 2BTLondonU.K.
| | - Harry Davies
- Department of Electrical and Electronic EngineeringImperial College LondonSW7 2BTLondonU.K.
- U.K. Dementia Research Institute, Care Research and Technology CentreSW7 2BTLondonU.K.
| | - Giuseppe Atzori
- 2Surrey Sleep Research Centre, School of Biosciences, Faculty of Health and Medical SciencesUniversity of SurreyGU2 7XHGuildfordU.K.
- U.K. Dementia Research Institute, Care Research and Technology CentreSW7 2BTLondonU.K.
| | - Ciro Della Monica
- 2Surrey Sleep Research Centre, School of Biosciences, Faculty of Health and Medical SciencesUniversity of SurreyGU2 7XHGuildfordU.K.
- U.K. Dementia Research Institute, Care Research and Technology CentreSW7 2BTLondonU.K.
| | - Kiran K. G. Ravindran
- 2Surrey Sleep Research Centre, School of Biosciences, Faculty of Health and Medical SciencesUniversity of SurreyGU2 7XHGuildfordU.K.
- U.K. Dementia Research Institute, Care Research and Technology CentreSW7 2BTLondonU.K.
| | - Victoria Revell
- 2Surrey Sleep Research Centre, School of Biosciences, Faculty of Health and Medical SciencesUniversity of SurreyGU2 7XHGuildfordU.K.
| | - Derk-Jan Dijk
- 2Surrey Sleep Research Centre, School of Biosciences, Faculty of Health and Medical SciencesUniversity of SurreyGU2 7XHGuildfordU.K.
- U.K. Dementia Research Institute, Care Research and Technology CentreSW7 2BTLondonU.K.
| | - Danilo P. Mandic
- Department of Electrical and Electronic EngineeringImperial College LondonSW7 2BTLondonU.K.
- U.K. Dementia Research Institute, Care Research and Technology CentreSW7 2BTLondonU.K.
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Zhai B, Elder GJ, Godfrey A. Challenges and opportunities of deep learning for wearable-based objective sleep assessment. NPJ Digit Med 2024; 7:85. [PMID: 38575794 PMCID: PMC10995158 DOI: 10.1038/s41746-024-01086-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Accepted: 03/22/2024] [Indexed: 04/06/2024] Open
Affiliation(s)
- Bing Zhai
- Department of Computer and Information Sciences, Northumbria University, Newcastle, UK
| | - Greg J Elder
- Northumbria Sleep Research, Department of Psychology, Northumbria University, Newcastle upon Tyne, UK
| | - Alan Godfrey
- Department of Computer and Information Sciences, Northumbria University, Newcastle, UK.
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Yue H, Chen Z, Guo W, Sun L, Dai Y, Wang Y, Ma W, Fan X, Wen W, Lei W. Research and application of deep learning-based sleep staging: Data, modeling, validation, and clinical practice. Sleep Med Rev 2024; 74:101897. [PMID: 38306788 DOI: 10.1016/j.smrv.2024.101897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2023] [Revised: 12/30/2023] [Accepted: 01/04/2024] [Indexed: 02/04/2024]
Abstract
Over the past few decades, researchers have attempted to simplify and accelerate the process of sleep stage classification through various approaches; however, only a few such approaches have gained widespread acceptance. Artificial intelligence technology, particularly deep learning, is promising for earning the trust of the sleep medicine community in automated sleep-staging systems, thus facilitating its application in clinical practice and integration into daily life. We aimed to comprehensively review the latest methods that are applying deep learning for enhancing sleep staging efficiency and accuracy. Starting from the requisite "data" for constructing deep learning algorithms, we elucidated the current landscape of this domain and summarized the fundamental modeling process, encompassing signal selection, data pre-processing, model architecture, classification tasks, and performance metrics. Furthermore, we reviewed the applications of automated sleep staging in scenarios such as sleep-disorder screening, diagnostic procedures, and health monitoring and management. Finally, we conducted an in-depth analysis and discussion of the challenges and future in intelligent sleep staging, particularly focusing on large-scale sleep datasets, interdisciplinary collaborations, and human-computer interactions.
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Affiliation(s)
- Huijun Yue
- Otorhinolaryngology Hospital, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, People's Republic of China
| | - Zhuqi Chen
- Otorhinolaryngology Hospital, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, People's Republic of China
| | - Wenbin Guo
- Otorhinolaryngology Hospital, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, People's Republic of China
| | - Lin Sun
- Otorhinolaryngology Hospital, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, People's Republic of China
| | - Yidan Dai
- School of Computer Science, South China Normal University, Guangzhou, People's Republic of China
| | - Yiming Wang
- Otorhinolaryngology Hospital, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, People's Republic of China
| | - Wenjun Ma
- School of Computer Science, South China Normal University, Guangzhou, People's Republic of China
| | - Xiaomao Fan
- College of Big Data and Internet, Shenzhen Technology University, Shenzhen, People's Republic of China
| | - Weiping Wen
- Otorhinolaryngology Hospital, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, People's Republic of China; Department of Otolaryngology, The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, People's Republic of China.
| | - Wenbin Lei
- Otorhinolaryngology Hospital, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, People's Republic of China.
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11
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Heremans ERM, Seedat N, Buyse B, Testelmans D, van der Schaar M, De Vos M. U-PASS: An uncertainty-guided deep learning pipeline for automated sleep staging. Comput Biol Med 2024; 171:108205. [PMID: 38401452 DOI: 10.1016/j.compbiomed.2024.108205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 02/16/2024] [Accepted: 02/20/2024] [Indexed: 02/26/2024]
Abstract
With the increasing prevalence of machine learning in critical fields like healthcare, ensuring the safety and reliability of these systems is crucial. Estimating uncertainty plays a vital role in enhancing reliability by identifying areas of high and low confidence and reducing the risk of errors. This study introduces U-PASS, a specialized human-centered machine learning pipeline tailored for clinical applications, which effectively communicates uncertainty to clinical experts and collaborates with them to improve predictions. U-PASS incorporates uncertainty estimation at every stage of the process, including data acquisition, training, and model deployment. Training is divided into a supervised pre-training step and a semi-supervised recording-wise finetuning step. We apply U-PASS to the challenging task of sleep staging and demonstrate that it systematically improves performance at every stage. By optimizing the training dataset, actively seeking feedback from domain experts for informative samples, and deferring the most uncertain samples to experts, U-PASS achieves an impressive expert-level accuracy of 85% on a challenging clinical dataset of elderly sleep apnea patients. This represents a significant improvement over the starting point at 75% accuracy. The largest improvement gain is due to the deferral of uncertain epochs to a sleep expert. U-PASS presents a promising AI approach to incorporating uncertainty estimation in machine learning pipelines, improving their reliability and unlocking their potential in clinical settings.
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Affiliation(s)
- Elisabeth R M Heremans
- KU Leuven, Department of Electrical Engineering (ESAT), STADIUS Center for Dynamical Systems, Signal Processing and Data Analytics, Kasteelpark Arenberg 10, B-3001 Leuven, Belgium.
| | | | - Bertien Buyse
- UZ Leuven, Department of Pneumology, Herestraat 49, B-3000 Leuven, Belgium
| | - Dries Testelmans
- UZ Leuven, Department of Pneumology, Herestraat 49, B-3000 Leuven, Belgium
| | | | - Maarten De Vos
- KU Leuven, Department of Electrical Engineering (ESAT), STADIUS Center for Dynamical Systems, Signal Processing and Data Analytics, Kasteelpark Arenberg 10, B-3001 Leuven, Belgium.
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12
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Zhu H, Xu Y, Wu Y, Shen N, Wang L, Chen C, Chen W. A Sequential End-to-End Neonatal Sleep Staging Model with Squeeze and Excitation Blocks and Sequential Multi-Scale Convolution Neural Networks. Int J Neural Syst 2024; 34:2450013. [PMID: 38369905 DOI: 10.1142/s0129065724500138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/20/2024]
Abstract
Automatic sleep staging offers a quick and objective assessment for quantitatively interpreting sleep stages in neonates. However, most of the existing studies either do not encompass any temporal information, or simply apply neural networks to exploit temporal information at the expense of high computational overhead and modeling ambiguity. This limits the application of these methods to multiple scenarios. In this paper, a sequential end-to-end sleep staging model, SeqEESleepNet, which is competent for parallelly processing sequential epochs and has a fast training rate to adapt to different scenarios, is proposed. SeqEESleepNet consists of a sequence epoch generation (SEG) module, a sequential multi-scale convolution neural network (SMSCNN) and squeeze and excitation (SE) blocks. The SEG module expands independent epochs into sequential signals, enabling the model to learn the temporal information between sleep stages. SMSCNN is a multi-scale convolution neural network that can extract both multi-scale features and temporal information from the signal. Subsequently, the followed SE block can reassign the weights of features through mapping and pooling. Experimental results exhibit that in a clinical dataset, the proposed method outperforms the state-of-the-art approaches, achieving an overall accuracy, F1-score, and Kappa coefficient of 71.8%, 71.8%, and 0.684 on a three-class classification task with a single channel EEG signal. Based on our overall results, we believe the proposed method could pave the way for convenient multi-scenario neonatal sleep staging methods.
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Affiliation(s)
- Hangyu Zhu
- Center for Intelligent Medical Electronics, School of Information Science and Technology, Fudan University, Shanghai 200433, P. R. China
| | - Yan Xu
- Department of Neurology, Children's Hospital of Fudan University, National Children's Medical Center, Shanghai, P. R. China
| | - Yonglin Wu
- Center for Intelligent Medical Electronics, School of Information Science and Technology, Fudan University, Shanghai 200433, P. R. China
| | - Ning Shen
- Center for Intelligent Medical Electronics, School of Information Science and Technology, Fudan University, Shanghai 200433, P. R. China
| | - Laishuan Wang
- Department of Neurology, Children's Hospital of Fudan University, National Children's Medical Center, Shanghai, P. R. China
| | - Chen Chen
- Human Phenome Institute, Fudan University, 825 Zhangheng Road, Shanghai 201203, P. R. China
| | - Wei Chen
- Center for Intelligent Medical Electronics, School of Information Science and Technology, Fudan University, Shanghai 200433, P. R. China
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13
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Alattar M, Govind A, Mainali S. Artificial Intelligence Models for the Automation of Standard Diagnostics in Sleep Medicine-A Systematic Review. Bioengineering (Basel) 2024; 11:206. [PMID: 38534480 DOI: 10.3390/bioengineering11030206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Revised: 01/31/2024] [Accepted: 02/09/2024] [Indexed: 03/28/2024] Open
Abstract
Sleep disorders, prevalent in the general population, present significant health challenges. The current diagnostic approach, based on a manual analysis of overnight polysomnograms (PSGs), is costly and time-consuming. Artificial intelligence has emerged as a promising tool in this context, offering a more accessible and personalized approach to diagnosis, particularly beneficial for under-served populations. This is a systematic review of AI-based models for sleep disorder diagnostics that were trained, validated, and tested on diverse clinical datasets. An extensive search of PubMed and IEEE databases yielded 2114 articles, but only 18 met our stringent selection criteria, underscoring the scarcity of thoroughly validated AI models in sleep medicine. The findings emphasize the necessity of a rigorous validation of AI models on multimodal clinical data, a step crucial for their integration into clinical practice. This would be in line with the American Academy of Sleep Medicine's support of AI research.
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Affiliation(s)
- Maha Alattar
- Division of Adult Neurology, Sleep Medicine, Vascular Neurology, Department of Neurology, Virginia Commonwealth University, Richmond, VA 23284, USA
| | - Alok Govind
- Department of Neurology, National Institute of Mental Health and Neurosciences, Bangalore 560029, India
| | - Shraddha Mainali
- Division of Vascular Neurology and Neurocritical Care, Department of Neurology, Virginia Commonwealth University, Richmond, VA 23284, USA
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Jain R, G RA. Modality-Specific Feature Selection, Data Augmentation and Temporal Context for Improved Performance in Sleep Staging. IEEE J Biomed Health Inform 2024; 28:1031-1042. [PMID: 38051608 DOI: 10.1109/jbhi.2023.3339713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2023]
Abstract
This work attempts to design an effective sleep staging system, making the best use of the available signals, strategies, and features in the literature. It must not only perform well on different datasets comprising healthy and clinical populations but also achieve good accuracy in cross-dataset experiments. Toward this end, we propose a model comprising multiple binary classifiers in a hierarchical fashion, where, at each level, one or more of EEG, EOG, and EMG are selected to best differentiate between two sleep stages. The best set of 100 features is chosen out of all the features derived from selected signals. The class imbalance in data is addressed by random undersampling and boosting techniques with decision trees as weak learners. Temporal context and data augmentation are used to improve the performance. We also evaluate the performance of our model by training and testing on different datasets. We compare the results of five approaches: using only EEG, EEG+EOG, EEG+EMG+EOG, EEG+EMG, and selective modality with a specific combination of EEG, EMG, and/or EOG at each level. The best results are obtained by considering features from EEG+EMG+EOG at each hierarchical level. The proposed model achieves average accuracies of 83.1%, 90.0%, 84.4%, 82.1%, 81.5%, 79.9%, and 73.7% on Sleep-EDF, Exp Sleep-EDF, ISRUC-S1, S2 and S3, DRMS-SUB, and DRMS-PAT datasets, respectively. For all the datasets except DRMS-SUB, the proposed method outperforms all the state-of-the-art approaches. Cross-dataset performance exceeds 80% for all datasets except DRMS-PAT; independent of whether the test data is from normal subjects or patients.
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15
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Hu Y, Shi W, Yeh CH. Spatiotemporal convolution sleep network based on graph attention mechanism with automatic feature extraction. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2024; 244:107930. [PMID: 38008039 DOI: 10.1016/j.cmpb.2023.107930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Revised: 11/12/2023] [Accepted: 11/13/2023] [Indexed: 11/28/2023]
Abstract
BACKGROUND AND OBJECTIVE Graph neural networks (GNNs) are widely used for automatic sleep staging. However, the majority of GNNs are based on spectral approaches, as far as we know, which heavily depend on the Laplacian eigenbasis determined by the graph structure with a large computing cost. METHODS We introduced a non-spectral approach named graph attention networks v2 (GATv2) as the core of our network to extract spatial information (S-GATv2 in our work), which is more flexible and intuitive than the routined spectral method. Meanwhile, to resolve the issue of weak generalization of using traditional feature extraction, the multi-convolutional layers are implemented to automatically extract features. In this work, the proposed spatiotemporal convolution sleep network (ST-GATv2) consists of multi-convolution layers and a GATv2 block. Of note, the graph attention technique to the time domain was applied to construct temporal GATv2 (T-GATv2), which intends to capture the connection between two channels in the adjacent sleep stages. Besides, the modified function is further proposed to capture the hidden changing trend information by the difference in the feature's value of the two adjacent stages. RESULTS In our experiment, we used the SS3 datasets in the MASS as our test datasets to compare with other advanced models. Our result reveals our model achieves the highest accuracy at 89.0 %. Besides, the proposed T-GATv2 block and modified function bring an approximate 0.5 % improvement in Kappa and F1-score. CONCLUSIONS Our results support the potential of graph attention mechanisms and creative blocks (T-GATv2 and modified function) in sleep classification. We suggest the proposed ST-GATv2 model as an effective tool in sleep staging in either healthy or diseased states.
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Affiliation(s)
- Yidong Hu
- School of Information and Electronics, Beijing Institute of Technology, Beijing 100081, China; School of Cyberspace Security, Beijing Institute of Technology, Beijing 100081, China
| | - Wenbin Shi
- School of Information and Electronics, Beijing Institute of Technology, Beijing 100081, China; Key Laboratory of Brain Health Intelligent Evaluation and Intervention, Ministry of Education (Beijing Institute of Technology), Beijing 100081, China
| | - Chien-Hung Yeh
- School of Information and Electronics, Beijing Institute of Technology, Beijing 100081, China; Key Laboratory of Brain Health Intelligent Evaluation and Intervention, Ministry of Education (Beijing Institute of Technology), Beijing 100081, China.
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16
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Van Der Aar JF, Van Den Ende DA, Fonseca P, Van Meulen FB, Overeem S, Van Gilst MM, Peri E. Deep transfer learning for automated single-lead EEG sleep staging with channel and population mismatches. Front Physiol 2024; 14:1287342. [PMID: 38250654 PMCID: PMC10796543 DOI: 10.3389/fphys.2023.1287342] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Accepted: 12/08/2023] [Indexed: 01/23/2024] Open
Abstract
Introduction: Automated sleep staging using deep learning models typically requires training on hundreds of sleep recordings, and pre-training on public databases is therefore common practice. However, suboptimal sleep stage performance may occur from mismatches between source and target datasets, such as differences in population characteristics (e.g., an unrepresented sleep disorder) or sensors (e.g., alternative channel locations for wearable EEG). Methods: We investigated three strategies for training an automated single-channel EEG sleep stager: pre-training (i.e., training on the original source dataset), training-from-scratch (i.e., training on the new target dataset), and fine-tuning (i.e., training on the original source dataset, fine-tuning on the new target dataset). As source dataset, we used the F3-M2 channel of healthy subjects (N = 94). Performance of the different training strategies was evaluated using Cohen's Kappa (κ) in eight smaller target datasets consisting of healthy subjects (N = 60), patients with obstructive sleep apnea (OSA, N = 60), insomnia (N = 60), and REM sleep behavioral disorder (RBD, N = 22), combined with two EEG channels, F3-M2 and F3-F4. Results: No differences in performance between the training strategies was observed in the age-matched F3-M2 datasets, with an average performance across strategies of κ = .83 in healthy, κ = .77 in insomnia, and κ = .74 in OSA subjects. However, in the RBD set, where data availability was limited, fine-tuning was the preferred method (κ = .67), with an average increase in κ of .15 to pre-training and training-from-scratch. In the presence of channel mismatches, targeted training is required, either through training-from-scratch or fine-tuning, increasing performance with κ = .17 on average. Discussion: We found that, when channel and/or population mismatches cause suboptimal sleep staging performance, a fine-tuning approach can yield similar to superior performance compared to building a model from scratch, while requiring a smaller sample size. In contrast to insomnia and OSA, RBD data contains characteristics, either inherent to the pathology or age-related, which apparently demand targeted training.
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Affiliation(s)
- Jaap F. Van Der Aar
- Department of Electrical Engineering, Eindhoven University of Technology, Eindhoven, Netherlands
- Philips Research, Eindhoven, Netherlands
| | | | - Pedro Fonseca
- Department of Electrical Engineering, Eindhoven University of Technology, Eindhoven, Netherlands
- Philips Research, Eindhoven, Netherlands
| | - Fokke B. Van Meulen
- Department of Electrical Engineering, Eindhoven University of Technology, Eindhoven, Netherlands
- Kempenhaeghe Center for Sleep Medicine, Heeze, Netherlands
| | - Sebastiaan Overeem
- Department of Electrical Engineering, Eindhoven University of Technology, Eindhoven, Netherlands
- Kempenhaeghe Center for Sleep Medicine, Heeze, Netherlands
| | - Merel M. Van Gilst
- Department of Electrical Engineering, Eindhoven University of Technology, Eindhoven, Netherlands
- Kempenhaeghe Center for Sleep Medicine, Heeze, Netherlands
| | - Elisabetta Peri
- Department of Electrical Engineering, Eindhoven University of Technology, Eindhoven, Netherlands
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17
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Tapia-Rivas NI, Estévez PA, Cortes-Briones JA. A robust deep learning detector for sleep spindles and K-complexes: towards population norms. Sci Rep 2024; 14:263. [PMID: 38167626 PMCID: PMC10762090 DOI: 10.1038/s41598-023-50736-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Accepted: 12/24/2023] [Indexed: 01/05/2024] Open
Abstract
Sleep spindles (SSs) and K-complexes (KCs) are brain patterns involved in cognitive functions that appear during sleep. Large-scale sleep studies would benefit from precise and robust automatic sleep event detectors, capable of adapting the variability in both electroencephalography (EEG) signals and expert annotation rules. We introduce the Sleep EEG Event Detector (SEED), a deep learning system that outperforms existing approaches in SS and KC detection, reaching an F1-score of 80.5% and 83.7%, respectively, on the MASS2 dataset. SEED transfers well and requires minimal fine-tuning for new datasets and annotation styles. Remarkably, SEED substantially reduces the required amount of annotated data by using a novel pretraining approach that leverages the rule-based detector A7. An analysis of 11,224 subjects revealed that SEED's detections provide better estimates of SS population statistics than existing approaches. SEED is a powerful resource for obtaining sleep-event statistics that could be useful for establishing population norms.
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Affiliation(s)
| | - Pablo A Estévez
- Department of Electrical Engineering, University of Chile, Santiago, Chile.
- Millennium Institute of Intelligent Healthcare Engineering, Santiago, Chile.
- IMPACT, Center of Interventional Medicine for Precision and Advanced Cellular Therapy, Santiago, Chile.
| | - José A Cortes-Briones
- Schizophrenia and Neuropharmacology Research Group at Yale (SNRGY), Department of Psychiatry, Yale University School of Medicine, New Haven, CT, USA
- Abraham Ribicoff Research Facilities, Connecticut Mental Health Center, New Haven, CT, USA
- VA Connecticut Healthcare System, West Haven, CT, USA
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18
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Zhang Z, Lin BS, Peng CW, Lin BS. Multi-Modal Sleep Stage Classification With Two-Stream Encoder-Decoder. IEEE Trans Neural Syst Rehabil Eng 2024; 32:2096-2105. [PMID: 38848223 DOI: 10.1109/tnsre.2024.3394738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2024]
Abstract
Sleep staging serves as a fundamental assessment for sleep quality measurement and sleep disorder diagnosis. Although current deep learning approaches have successfully integrated multimodal sleep signals, enhancing the accuracy of automatic sleep staging, certain challenges remain, as follows: 1) optimizing the utilization of multi-modal information complementarity, 2) effectively extracting both long- and short-range temporal features of sleep information, and 3) addressing the class imbalance problem in sleep data. To address these challenges, this paper proposes a two-stream encode-decoder network, named TSEDSleepNet, which is inspired by the depth sensitive attention and automatic multi-modal fusion (DSA2F) framework. In TSEDSleepNet, a two-stream encoder is used to extract the multiscale features of electrooculogram (EOG) and electroencephalogram (EEG) signals. And a self-attention mechanism is utilized to fuse the multiscale features, generating multi-modal saliency features. Subsequently, the coarser-scale construction module (CSCM) is adopted to extract and construct multi-resolution features from the multiscale features and the salient features. Thereafter, a Transformer module is applied to capture both long- and short-range temporal features from the multi-resolution features. Finally, the long- and short-range temporal features are restored with low-layer details and mapped to the predicted classification results. Additionally, the Lovász loss function is applied to alleviate the class imbalance problem in sleep datasets. Our proposed method was tested on the Sleep-EDF-39 and Sleep-EDF-153 datasets, and it achieved classification accuracies of 88.9% and 85.2% and Macro-F1 scores of 84.8% and 79.7%, respectively, thus outperforming conventional traditional baseline models. These results highlight the efficacy of the proposed method in fusing multi-modal information. This method has potential for application as an adjunct tool for diagnosing sleep disorders.
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Li J, Wu C, Pan J, Wang F. Few-shot EEG sleep staging based on transductive prototype optimization network. Front Neuroinform 2023; 17:1297874. [PMID: 38125309 PMCID: PMC10730933 DOI: 10.3389/fninf.2023.1297874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Accepted: 11/13/2023] [Indexed: 12/23/2023] Open
Abstract
Electroencephalography (EEG) is a commonly used technology for monitoring brain activities and diagnosing sleep disorders. Clinically, doctors need to manually stage sleep based on EEG signals, which is a time-consuming and laborious task. In this study, we propose a few-shot EEG sleep staging termed transductive prototype optimization network (TPON) method, which aims to improve the performance of EEG sleep staging. Compared with traditional deep learning methods, TPON uses a meta-learning algorithm, which generalizes the classifier to new classes that are not visible in the training set, and only have a few examples for each new class. We learn the prototypes of existing objects through meta-training, and capture the sleep features of new objects through the "learn to learn" method of meta-learning. The prototype distribution of the class is optimized and captured by using support set and unlabeled high confidence samples to increase the authenticity of the prototype. Compared with traditional prototype networks, TPON can effectively solve too few samples in few-shot learning and improve the matching degree of prototypes in prototype network. The experimental results on the public SleepEDF-2013 dataset show that the proposed algorithm outperform than most advanced algorithms in the overall performance. In addition, we experimentally demonstrate the feasibility of cross-channel recognition, which indicates that there are many similar sleep EEG features between different channels. In future research, we can further explore the common features among different channels and investigate the combination of universal features in sleep EEG. Overall, our method achieves high accuracy in sleep stage classification, demonstrating the effectiveness of this approach and its potential applications in other medical fields.
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Affiliation(s)
| | | | | | - Fei Wang
- School of Software, South China Normal University, Guangzhou, China
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20
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Van den Bulcke L, Peeters AM, Heremans E, Davidoff H, Borzée P, De Vos M, Emsell L, Van den Stock J, De Roo M, Tournoy J, Buyse B, Vandenbulcke M, Van Audenhove C, Testelmans D, Van Den Bossche M. Acoustic stimulation as a promising technique to enhance slow-wave sleep in Alzheimer's disease: results of a pilot study. J Clin Sleep Med 2023; 19:2107-2112. [PMID: 37593850 PMCID: PMC10692948 DOI: 10.5664/jcsm.10778] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 08/16/2023] [Accepted: 08/16/2023] [Indexed: 08/19/2023]
Abstract
STUDY OBJECTIVES Sleep disturbances are common in people with Alzheimer's disease (AD), and a reduction in slow-wave activity is the most striking underlying change. Acoustic stimulation has emerged as a promising approach to enhance slow-wave activity in healthy adults and people with amnestic mild cognitive impairment. In this phase 1 study we investigated, for the first time, the feasibility of acoustic stimulation in AD and piloted the effect on slow-wave sleep (SWS). METHODS Eleven adults with mild to moderate AD first wore the DREEM 2 headband for 2 nights to establish a baseline registration. Using machine learning, the DREEM 2 headband automatically scores sleep stages in real time. Subsequently, the participants wore the headband for 14 consecutive "stimulation nights" at home. During these nights, the device applied phase-locked acoustic stimulation of 40-dB pink noise delivered over 2 bone-conductance transducers targeted to the up-phase of the delta wave or SHAM, if it detected SWS in sufficiently high-quality data. RESULTS Results of the DREEM 2 headband algorithm show a significant average increase in SWS (minutes) [t(3.17) = 33.57, P = .019] between the beginning and end of the intervention, almost twice as much time was spent in SWS. Consensus scoring of electroencephalography data confirmed this trend of more time spent in SWS [t(2.4) = 26.07, P = .053]. CONCLUSIONS Our phase 1 study provided the first evidence that targeted acoustic stimuli is feasible and could increase SWS in AD significantly. Future studies should further test and optimize the effect of stimulation on SWS in AD in a large randomized controlled trial. CITATION Van den Bulcke L, Peeters A-M, Heremans E, et al. Acoustic stimulation as a promising technique to enhance slow-wave sleep in Alzheimer's disease: results of a pilot study. J Clin Sleep Med. 2023;19(12):2107-2112.
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Affiliation(s)
- Laura Van den Bulcke
- Geriatric Psychiatry, University Psychiatric Center KU Leuven, Leuven, Belgium
- Neuropsychiatry, Research Group Psychiatry, Department of Neurosciences, Leuven Brain Institute, KU Leuven, Leuven, Belgium
| | - Anne-Marie Peeters
- Geriatric Psychiatry, University Psychiatric Center KU Leuven, Leuven, Belgium
- Neuropsychiatry, Research Group Psychiatry, Department of Neurosciences, Leuven Brain Institute, KU Leuven, Leuven, Belgium
| | | | - Hannah Davidoff
- Department of Electrical Engineering (ESAT), KU Leuven, Leuven, Belgium
- CSH (Circuits and Systems for Health) - imec, Heverlee, Belgium
| | - Pascal Borzée
- Department of Pneumology, University Hospitals Leuven, Leuven, Belgium
| | - Maarten De Vos
- Department of Electrical Engineering (ESAT), KU Leuven, Leuven, Belgium
- Department of Development and Regeneration, Faculty of Medicine, KU Leuven, Leuven, Belgium
| | - Louise Emsell
- Geriatric Psychiatry, University Psychiatric Center KU Leuven, Leuven, Belgium
- Neuropsychiatry, Research Group Psychiatry, Department of Neurosciences, Leuven Brain Institute, KU Leuven, Leuven, Belgium
- Translational MRI, Department of Imaging and Pathology, KU Leuven, Leuven, Belgium
| | - Jan Van den Stock
- Geriatric Psychiatry, University Psychiatric Center KU Leuven, Leuven, Belgium
- Neuropsychiatry, Research Group Psychiatry, Department of Neurosciences, Leuven Brain Institute, KU Leuven, Leuven, Belgium
| | - Maaike De Roo
- Department of Geriatric Medicine, University Hospitals Leuven, Leuven, Belgium
- Department of Public Health and Primary Care, KU Leuven, Leuven, Belgium
| | - Jos Tournoy
- Department of Geriatric Medicine, University Hospitals Leuven, Leuven, Belgium
- Department of Public Health and Primary Care, KU Leuven, Leuven, Belgium
| | - Bertien Buyse
- Department of Pneumology, University Hospitals Leuven, Leuven, Belgium
- Laboratory of Respiratory Diseases and Thoracic Surgery (BREATHE), Department of Chronic Diseases and Metabolism, KU Leuven, Leuven, Belgium
| | - Mathieu Vandenbulcke
- Geriatric Psychiatry, University Psychiatric Center KU Leuven, Leuven, Belgium
- Neuropsychiatry, Research Group Psychiatry, Department of Neurosciences, Leuven Brain Institute, KU Leuven, Leuven, Belgium
| | - Chantal Van Audenhove
- Department of Public Health and Primary Care, KU Leuven, Leuven, Belgium
- LUCAS, Center for Care Research and Consultancy, KU Leuven, Leuven, Belgium
| | - Dries Testelmans
- Department of Pneumology, University Hospitals Leuven, Leuven, Belgium
- Laboratory of Respiratory Diseases and Thoracic Surgery (BREATHE), Department of Chronic Diseases and Metabolism, KU Leuven, Leuven, Belgium
| | - Maarten Van Den Bossche
- Geriatric Psychiatry, University Psychiatric Center KU Leuven, Leuven, Belgium
- Neuropsychiatry, Research Group Psychiatry, Department of Neurosciences, Leuven Brain Institute, KU Leuven, Leuven, Belgium
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21
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Anido-Alonso A, Alvarez-Estevez D. Decentralized Data-Privacy Preserving Deep-Learning Approaches for Enhancing Inter-Database Generalization in Automatic Sleep Staging. IEEE J Biomed Health Inform 2023; 27:5610-5621. [PMID: 37651482 DOI: 10.1109/jbhi.2023.3310869] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
Abstract
Automatic sleep staging has been an active field of development. Despite multiple efforts, the area remains a focus of research interest. Indeed, while promising results have reported in past literature, uptake of automatic sleep scoring in the clinical setting remains low. One of the current issues regards the difficulty to generalization performance results beyond the local testing scenario, i.e. across data from different clinics. Issues derived from data-privacy restrictions, that generally apply in the medical domain, pose additional difficulties in the successful development of these methods. We propose the use of several decentralized deep-learning approaches, namely ensemble models and federated learning, for robust inter-database performance generalization and data-privacy preservation in automatic sleep staging scenario. Specifically, we explore four ensemble combination strategies (max-voting, output averaging, size-proportional weighting, and Nelder-Mead) and present a new federated learning algorithm, so-called sub-sampled federated stochastic gradient descent (ssFedSGD). To evaluate generalization capabilities of such approaches, experimental procedures are carried out using a leaving-one-database-out direct-transfer scenario on six independent and heterogeneous public sleep staging databases. The resulting performance is compared with respect to two baseline approaches involving single-database and centralized multiple-database derived models. Our results show that proposed decentralized learning methods outperform baseline local approaches, and provide similar generalization results to centralized database-combined approaches. We conclude that these methods are more preferable choices, as they come with additional advantages concerning improved scalability, flexible design, and data-privacy preservation.
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22
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Liu Z, Qin M, Lu Y, Luo S, Zhang Q. DenSleepNet: DenseNet based model for sleep staging with two-frequency feature fusion and coordinate attention. Biomed Eng Lett 2023; 13:751-761. [PMID: 37872995 PMCID: PMC10590351 DOI: 10.1007/s13534-023-00301-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Revised: 06/15/2023] [Accepted: 06/23/2023] [Indexed: 10/25/2023] Open
Abstract
Sleep staging is often applied to assess the quality of sleep and also be used to prevent and monitor psychiatric disorders caused by sleep. However, it remains a challenge to extract the discriminative features of salient waveforms in sleep EEG and enable the network to effectively classify sleep stages by emphasizing these crucial features, thus achieving higher accuracy. In this study, an end-to-end deep learning model based on DenseNet for automatic sleep staging is designed and constructed. In the framework, two convolutional branches are devised to extract the underlying features (Two-Frequency Feature) at various frequencies, which are then fused and input into the DenseNet module to extract salient waveform features. After that, the Coordinate Attention mechanism is employed to enhance the localization of salient waveform features by emphasizing the position of salient waveforms and the spatial relationship across the entire frequency spectrum. Finally, the obtained features are accessed to the fully connected for sleep staging. The model was validated with a 20-fold cross-validation procedure on two public available datasets, and the overall accuracy, kappa coefficient, and MF1 score reached 92.9%, 78.7, 0.86 and 90.0%, 75.8, 0.80 on Sleep-EDF-20 and Sleep-EDFx, respectively. Experimental results show that the proposed model achieves competitive performance for sleep staging compared with the reported approaches under the identical conditions.
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Affiliation(s)
- Zhi Liu
- School of Artificial Intelligence, Chongqing University of Technology, Chongqing, China
| | - Meiqiao Qin
- School of Artificial Intelligence, Chongqing University of Technology, Chongqing, China
| | - Yunhua Lu
- School of Artificial Intelligence, Chongqing University of Technology, Chongqing, China
| | - Sixin Luo
- School of Artificial Intelligence, Chongqing University of Technology, Chongqing, China
| | - Qinhan Zhang
- School of Artificial Intelligence, Chongqing University of Technology, Chongqing, China
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23
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Huang X, Schmelter F, Irshad MT, Piet A, Nisar MA, Sina C, Grzegorzek M. Optimizing sleep staging on multimodal time series: Leveraging borderline synthetic minority oversampling technique and supervised convolutional contrastive learning. Comput Biol Med 2023; 166:107501. [PMID: 37742416 DOI: 10.1016/j.compbiomed.2023.107501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 08/15/2023] [Accepted: 09/15/2023] [Indexed: 09/26/2023]
Abstract
Sleep is an important research area in nutritional medicine that plays a crucial role in human physical and mental health restoration. It can influence diet, metabolism, and hormone regulation, which can affect overall health and well-being. As an essential tool in the sleep study, the sleep stage classification provides a parsing of sleep architecture and a comprehensive understanding of sleep patterns to identify sleep disorders and facilitate the formulation of targeted sleep interventions. However, the class imbalance issue is typically salient in sleep datasets, which severely affects classification performances. To address this issue and to extract optimal multimodal features of EEG, EOG, and EMG that can improve the accuracy of sleep stage classification, a Borderline Synthetic Minority Oversampling Technique (B-SMOTE)-Based Supervised Convolutional Contrastive Learning (BST-SCCL) is proposed, which can avoid the risk of data mismatch between various sleep knowledge domains (varying health conditions and annotation rules) and strengthening learning characteristics of the N1 stage from the pair-wise segments comparison strategy. The lightweight residual network architecture with a novel truncated cross-entropy loss function is designed to accommodate multimodal time series and boost the training speed and performance stability. The proposed model has been validated on four well-known public sleep datasets (Sleep-EDF-20, Sleep-EDF-78, ISRUC-1, and ISRUC-3) and its superior performance (overall accuracy of 91.31-92.34%, MF1 of 88.21-90.08%, and Cohen's Kappa coefficient k of 0.87-0.89) has further demonstrated its effectiveness. It shows the great potential of contrastive learning for cross-domain knowledge interaction in precision medicine.
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Affiliation(s)
- Xinyu Huang
- Institute of Medical Informatics, University of Lübeck, Germany.
| | - Franziska Schmelter
- Institute of Nutritional Medicine, University of Lübeck and University Medical Center Schleswig-Holstein, Lübeck, Germany.
| | | | - Artur Piet
- Institute of Medical Informatics, University of Lübeck, Germany.
| | | | - Christian Sina
- Institute of Nutritional Medicine, University of Lübeck and University Medical Center Schleswig-Holstein, Lübeck, Germany; Fraunhofer Research Institution for Individualized and Cell-Based Medical Engineering (IMTE), Lübeck, Germany.
| | - Marcin Grzegorzek
- Institute of Medical Informatics, University of Lübeck, Germany; Fraunhofer Research Institution for Individualized and Cell-Based Medical Engineering (IMTE), Lübeck, Germany.
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24
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Lyu J, Shi W, Zhang C, Yeh CH. A Novel Sleep Staging Method Based on EEG and ECG Multimodal Features Combination. IEEE Trans Neural Syst Rehabil Eng 2023; 31:4073-4084. [PMID: 37819827 DOI: 10.1109/tnsre.2023.3323892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/13/2023]
Abstract
Accurate sleep staging evaluates the quality of sleep, supporting the clinical diagnosis and intervention of sleep disorders and related diseases. Although previous attempts to classify sleep stages have achieved high classification performance, little attention has been paid to integrating the rich information in brain and heart dynamics during sleep for sleep staging. In this study, we propose a generalized EEG and ECG multimodal feature combination to classify sleep stages with high efficiency and accuracy. Briefly, a hybrid features combination in terms of multiscale entropy and intrinsic mode function are used to reflect nonlinear dynamics in multichannel EEGs, along with heart rate variability measures over time/frequency domains, and sample entropy across scales are applied for ECGs. For both the max-relevance and min-redundancy method and principal component analysis were used for dimensionality reduction. The selected features were classified by four traditional machine learning classifiers. Macro-F1 score, macro-geometric mean, and Cohen kappa value are adopted to evaluate the classification performance of each class in an imbalanced dataset. Experimental results show that EEG features contribute more to wake stage classification while ECG features contribute more to deep sleep stages. The proposed combination achieves the highest accuracy of 84.3% and the highest kappa value of 0.794 on the support vector machine in the ISRUC-S3 dataset, suggesting the proposed multimodal features combination is promising in accuracy and efficiency compared to other state-of-the-art methods.
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25
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Zan H, Yildiz A. Multi-task learning for arousal and sleep stage detection using fully convolutional networks. J Neural Eng 2023; 20:056034. [PMID: 37769664 DOI: 10.1088/1741-2552/acfe3a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2023] [Accepted: 09/28/2023] [Indexed: 10/03/2023]
Abstract
Objective.Sleep is a critical physiological process that plays a vital role in maintaining physical and mental health. Accurate detection of arousals and sleep stages is essential for the diagnosis of sleep disorders, as frequent and excessive occurrences of arousals disrupt sleep stage patterns and lead to poor sleep quality, negatively impacting physical and mental health. Polysomnography is a traditional method for arousal and sleep stage detection that is time-consuming and prone to high variability among experts.Approach. In this paper, we propose a novel multi-task learning approach for arousal and sleep stage detection using fully convolutional neural networks. Our model, FullSleepNet, accepts a full-night single-channel EEG signal as input and produces segmentation masks for arousal and sleep stage labels. FullSleepNet comprises four modules: a convolutional module to extract local features, a recurrent module to capture long-range dependencies, an attention mechanism to focus on relevant parts of the input, and a segmentation module to output final predictions.Main results.By unifying the two interrelated tasks as segmentation problems and employing a multi-task learning approach, FullSleepNet achieves state-of-the-art performance for arousal detection with an area under the precision-recall curve of 0.70 on Sleep Heart Health Study and Multi-Ethnic Study of Atherosclerosis datasets. For sleep stage classification, FullSleepNet obtains comparable performance on both datasets, achieving an accuracy of 0.88 and an F1-score of 0.80 on the former and an accuracy of 0.83 and an F1-score of 0.76 on the latter.Significance. Our results demonstrate that FullSleepNet offers improved practicality, efficiency, and accuracy for the detection of arousal and classification of sleep stages using raw EEG signals as input.
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Affiliation(s)
- Hasan Zan
- Vocational School, Mardin Artuklu University, Mardin, Turkey
| | - Abdulnasır Yildiz
- Department of Electrical and Electronics Engineering, Dicle University, Diyarbakir, Turkey
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Kaongoen N, Choi J, Woo Choi J, Kwon H, Hwang C, Hwang G, Kim BH, Jo S. The future of wearable EEG: a review of ear-EEG technology and its applications. J Neural Eng 2023; 20:051002. [PMID: 37748474 DOI: 10.1088/1741-2552/acfcda] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Accepted: 09/25/2023] [Indexed: 09/27/2023]
Abstract
Objective.This review paper provides a comprehensive overview of ear-electroencephalogram (EEG) technology, which involves recording EEG signals from electrodes placed in or around the ear, and its applications in the field of neural engineering.Approach.We conducted a thorough literature search using multiple databases to identify relevant studies related to ear-EEG technology and its various applications. We selected 123 publications and synthesized the information to highlight the main findings and trends in this field.Main results.Our review highlights the potential of ear-EEG technology as the future of wearable EEG technology. We discuss the advantages and limitations of ear-EEG compared to traditional scalp-based EEG and methods to overcome those limitations. Through our review, we found that ear-EEG is a promising method that produces comparable results to conventional scalp-based methods. We review the development of ear-EEG sensing devices, including the design, types of sensors, and materials. We also review the current state of research on ear-EEG in different application areas such as brain-computer interfaces, and clinical monitoring.Significance.This review paper is the first to focus solely on reviewing ear-EEG research articles. As such, it serves as a valuable resource for researchers, clinicians, and engineers working in the field of neural engineering. Our review sheds light on the exciting future prospects of ear-EEG, and its potential to advance neural engineering research and become the future of wearable EEG technology.
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Affiliation(s)
- Netiwit Kaongoen
- Information and Electronics Research Institute, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
| | - Jaehoon Choi
- School of Computing, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
| | - Jin Woo Choi
- Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA 94304, United States of America
| | - Haram Kwon
- School of Computing, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
| | - Chaeeun Hwang
- School of Computing, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
| | - Guebin Hwang
- Robotics Program, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
| | - Byung Hyung Kim
- Department of Artificial Intelligence, Inha University, Incheon, Republic of Korea
| | - Sungho Jo
- School of Computing, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
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Li T, Gong Y, Lv Y, Wang F, Hu M, Wen Y. GAC-SleepNet: A dual-structured sleep staging method based on graph structure and Euclidean structure. Comput Biol Med 2023; 165:107477. [PMID: 37717528 DOI: 10.1016/j.compbiomed.2023.107477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Revised: 08/16/2023] [Accepted: 09/04/2023] [Indexed: 09/19/2023]
Abstract
Sleep staging is a precondition for the diagnosis and treatment of sleep disorders. However, how to fully exploit the relationship between spatial features of the brain and sleep stages is an important task. Many current classical algorithms only extract the characteristic information of the brain in the Euclidean space without considering other spatial structures. In this study, a sleep staging network named GAC-SleepNet is designed. GAC-SleepNet uses the characteristic information in the dual structure of the graph structure and the Euclidean structure for the classification of sleep stages. In the graph structure, this study uses a graph convolutional neural network to learn the deep features of each sleep stage and converts the features in the topological structure into feature vectors by a multilayer perceptron. In the Euclidean structure, this study uses convolutional neural networks to learn the temporal features of sleep information and combine attention mechanism to portray the connection between different sleep periods and EEG signals, while enhancing the description of global features to avoid local optima. In this study, the performance of the proposed network is evaluated on two public datasets. The experimental results show that the dual spatial structure captures more adequate and comprehensive information about sleep features and shows advancement in terms of different evaluation metrics.
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Affiliation(s)
- Tianxing Li
- School of Electronic Information Engineering, Changchun University of Science and Technology, Changchun, 130000, China
| | - Yulin Gong
- School of Electronic Information Engineering, Changchun University of Science and Technology, Changchun, 130000, China.
| | - Yudan Lv
- The Department of Neurology, First Hospital of Jilin University, Changchun, 130000, China
| | - Fatong Wang
- School of Electronic Information Engineering, Changchun University of Science and Technology, Changchun, 130000, China
| | - Mingjia Hu
- School of Electronic Information Engineering, Changchun University of Science and Technology, Changchun, 130000, China
| | - Yinke Wen
- School of Electronic Information Engineering, Changchun University of Science and Technology, Changchun, 130000, China
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Mao S, Sejdic E. A Review of Recurrent Neural Network-Based Methods in Computational Physiology. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2023; 34:6983-7003. [PMID: 35130174 PMCID: PMC10589904 DOI: 10.1109/tnnls.2022.3145365] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
Artificial intelligence and machine learning techniques have progressed dramatically and become powerful tools required to solve complicated tasks, such as computer vision, speech recognition, and natural language processing. Since these techniques have provided promising and evident results in these fields, they emerged as valuable methods for applications in human physiology and healthcare. General physiological recordings are time-related expressions of bodily processes associated with health or morbidity. Sequence classification, anomaly detection, decision making, and future status prediction drive the learning algorithms to focus on the temporal pattern and model the nonstationary dynamics of the human body. These practical requirements give birth to the use of recurrent neural networks (RNNs), which offer a tractable solution in dealing with physiological time series and provide a way to understand complex time variations and dependencies. The primary objective of this article is to provide an overview of current applications of RNNs in the area of human physiology for automated prediction and diagnosis within different fields. Finally, we highlight some pathways of future RNN developments for human physiology.
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Phan H, Lorenzen KP, Heremans E, Chen OY, Tran MC, Koch P, Mertins A, Baumert M, Mikkelsen KB, De Vos M. L-SeqSleepNet: Whole-cycle Long Sequence Modeling for Automatic Sleep Staging. IEEE J Biomed Health Inform 2023; 27:4748-4757. [PMID: 37552591 DOI: 10.1109/jbhi.2023.3303197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/10/2023]
Abstract
Human sleep is cyclical with a period of approximately 90 minutes, implying long temporal dependency in the sleep data. Yet, exploring this long-term dependency when developing sleep staging models has remained untouched. In this work, we show that while encoding the logic of a whole sleep cycle is crucial to improve sleep staging performance, the sequential modelling approach in existing state-of-the-art deep learning models are inefficient for that purpose. We thus introduce a method for efficient long sequence modelling and propose a new deep learning model, L-SeqSleepNet, which takes into account whole-cycle sleep information for sleep staging. Evaluating L-SeqSleepNet on four distinct databases of various sizes, we demonstrate state-of-the-art performance obtained by the model over three different EEG setups, including scalp EEG in conventional Polysomnography (PSG), in-ear EEG, and around-the-ear EEG (cEEGrid), even with a single EEG channel input. Our analyses also show that L-SeqSleepNet is able to alleviate the predominance of N2 sleep (the major class in terms of classification) to bring down errors in other sleep stages. Moreover the network becomes much more robust, meaning that for all subjects where the baseline method had exceptionally poor performance, their performance are improved significantly. Finally, the computation time only grows at a sub-linear rate when the sequence length increases.
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30
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Wang J, Zhao S, Zhou Y, Jiang H, Yu Z, Li T, Li S, Pan G. Narcolepsy Diagnosis With Sleep Stage Features Using PSG Recordings. IEEE Trans Neural Syst Rehabil Eng 2023; 31:3619-3629. [PMID: 37672382 DOI: 10.1109/tnsre.2023.3312396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/08/2023]
Abstract
Narcolepsy is a sleep disorder affecting millions of people worldwide and causes serious public health problems. It is hard for doctors to correctly and objectively diagnose narcolepsy. Polysomnography (PSG) recordings, a gold standard for sleep monitoring and quality measurement, can provide abundant and objective cues for the narcolepsy diagnosis. There have been some studies on automatic narcolepsy diagnosis using PSG recordings. However, the sleep stage information, an important cue for narcolepsy diagnosis, has not been fully utilized. For example, some studies have not considered the sleep stage information to diagnose narcolepsy. Although some studies consider the sleep stage information, the stages are manually scored by experts, which is time-consuming and subjective. And the framework using sleep stages scored automatically for narcolepsy diagnosis is designed in a two-phase learning manner, where sleep staging in the first phase and diagnosis in the second phase, causing cumulative error and degrading the performance. To address these challenges, we propose a novel end-to-end framework for automatic narcolepsy diagnosis using PSG recordings. In particular, adopting the idea of multi-task learning, we take the sleep staging as our auxiliary task, and then combine the sleep stage related features with narcolepsy related features for our primary task of narcolepsy diagnosis. We collected a dataset of PSG recordings from 77 participants and evaluated our framework on it. Both of the sleep stage features and the end-to-end fashion contribute to diagnosis performance. Moreover, we do a comprehensive analysis on the relationship between sleep stages and narcolepsy, correlation of different channels, predictive ability of different sensing data, and diagnosis results in subject level.
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31
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Ji X, Li Y, Wen P. 3DSleepNet: A Multi-Channel Bio-Signal Based Sleep Stages Classification Method Using Deep Learning. IEEE Trans Neural Syst Rehabil Eng 2023; 31:3513-3523. [PMID: 37639413 DOI: 10.1109/tnsre.2023.3309542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/31/2023]
Abstract
A novel multi-channel-based 3D convolutional neural network (3D-CNN) is proposed in this paper to classify sleep stages. Time domain features, frequency domain features, and time-frequency domain features are extracted from electroencephalography (EEG), electromyogram (EMG), and electrooculogram (EOG) channels and fed into the 3D-CNN model to classify sleep stages. Intrinsic connections among different bio-signals and different frequency bands in time series and time-frequency are learned by 3D convolutional layers, while the frequency relations are learned by 2D convolutional layers. Partial dot-product attention layers help this model find the most important channels and frequency bands in different sleep stages. A long short-term memory unit is added to learn the transition rules among neighboring epochs. Classification experiments were conducted using both ISRUC-S3 datasets and ISRUC-S1, sleep-disorder datasets. The experimental results showed that the overall accuracy achieved 0.832 and the F1-score and Cohen's kappa reached 0.814 and 0.783, respectively, on ISRUC-S3, which are a competitive classification performance with the state-of-the-art baselines. The overall accuracy, F1-score, and Cohen's kappa on ISRUC-S1 achieved 0.820, 0.797, and 0.768, respectively, which also demonstrate its generality on unhealthy subjects. Further experiments were conducted on ISRUC-S3 subset to evaluate its training time. The training time on 10 subjects from ISRUC-S3 with 8549 epochs is 4493s, which indicates its highest calculation speed compared with the existing high-performance graph convolutional networks and [Formula: see text]Net architecture algorithms.
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Dai Y, Li X, Liang S, Wang L, Duan Q, Yang H, Zhang C, Chen X, Li L, Li X, Liao X. MultiChannelSleepNet: A Transformer-Based Model for Automatic Sleep Stage Classification With PSG. IEEE J Biomed Health Inform 2023; 27:4204-4215. [PMID: 37289607 DOI: 10.1109/jbhi.2023.3284160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Automatic sleep stage classification plays an essential role in sleep quality measurement and sleep disorder diagnosis. Although many approaches have been developed, most use only single-channel electroencephalogram signals for classification. Polysomnography (PSG) provides multiple channels of signal recording, enabling the use of the appropriate method to extract and integrate the information from different channels to achieve higher sleep staging performance. We present a transformer encoder-based model, MultiChannelSleepNet, for automatic sleep stage classification with multichannel PSG data, whose architecture is implemented based on the transformer encoder for single-channel feature extraction and multichannel feature fusion. In a single-channel feature extraction block, transformer encoders extract features from time-frequency images of each channel independently. Based on our integration strategy, the feature maps extracted from each channel are fused in the multichannel feature fusion block. Another set of transformer encoders further capture joint features, and a residual connection preserves the original information from each channel in this block. Experimental results on three publicly available datasets demonstrate that our method achieves higher classification performance than state-of-the-art techniques. MultiChannelSleepNet is an efficient method to extract and integrate the information from multichannel PSG data, which facilitates precision sleep staging in clinical applications.
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33
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Jin Z, Jia K. A temporal multi-scale hybrid attention network for sleep stage classification. Med Biol Eng Comput 2023; 61:2291-2303. [PMID: 36997808 DOI: 10.1007/s11517-023-02808-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2022] [Accepted: 02/13/2023] [Indexed: 04/01/2023]
Abstract
Sleep is crucial for human health. Automatic sleep stage classification based on polysomnogram (PSG) is meaningful for the diagnosis of sleep disorders, which has attracted extensive attention in recent years. Most existing methods could not fully consider the different transitions of sleep stages and fit the visual inspection of sleep experts simultaneously. To this end, we propose a temporal multi-scale hybrid attention network, namely TMHAN, to automatically achieve sleep staging. The temporal multi-scale mechanism incorporates short-term abrupt and long-term periodic transitions of the successive PSG epochs. Furthermore, the hybrid attention mechanism includes 1-D local attention, 2-D global attention, and 2-D contextual sparse multi-head self-attention for three kinds of sequence-level representations. The concatenated representation is subsequently fed into a softmax layer to train an end-to-end model. Experimental results on two benchmark sleep datasets show that TMHAN obtains the best performance compared with several baselines, demonstrating the effectiveness of our model. In general, our work not only provides good classification performance, but also fits the actual sleep staging processes, which makes contribution for the combination of deep learning and sleep medicine.
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Affiliation(s)
- Zheng Jin
- Beijing Key Laboratory of Computational Intelligence and Intelligent System, Faculty of Information Technology, Beijing University of Technology, Beijing, 100124, China
- Beijing Laboratory of Advanced Information Networks, Beijing, 100124, China
| | - Kebin Jia
- Beijing Key Laboratory of Computational Intelligence and Intelligent System, Faculty of Information Technology, Beijing University of Technology, Beijing, 100124, China.
- Beijing Laboratory of Advanced Information Networks, Beijing, 100124, China.
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Abstract
Automatic polysomnography analysis can be leveraged to shorten scoring times, reduce associated costs, and ultimately improve the overall diagnosis of sleep disorders. Multiple and diverse strategies have been attempted for implementation of this technology at scale in the routine workflow of sleep centers. The field, however, is complex and presents unsolved challenges in a number of areas. Recent developments in computer science and artificial intelligence are nevertheless closing the gap. Technological advances are also opening new pathways for expanding our current understanding of the domain and its analysis.
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Affiliation(s)
- Diego Alvarez-Estevez
- Center for Information and Communications Technology Research (CITIC), Universidade da Coruña, 15071 A Coruña, Spain.
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35
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Zahid AN, Jennum P, Mignot E, Sorensen HBD. MSED: A Multi-Modal Sleep Event Detection Model for Clinical Sleep Analysis. IEEE Trans Biomed Eng 2023; 70:2508-2518. [PMID: 37028083 DOI: 10.1109/tbme.2023.3252368] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
Abstract
Clinical sleep analysis require manual analysis of sleep patterns for correct diagnosis of sleep disorders. However, several studies have shown significant variability in manual scoring of clinically relevant discrete sleep events, such as arousals, leg movements, and sleep disordered breathing (apneas and hypopneas). We investigated whether an automatic method could be used for event detection and if a model trained on all events (joint model) performed better than corresponding event-specific models (single-event models). We trained a deep neural network event detection model on 1653 individual recordings and tested the optimized model on 1000 separate hold-out recordings. F1 scores for the optimized joint detection model were 0.70, 0.63, and 0.62 for arousals, leg movements, and sleep disordered breathing, respectively, compared to 0.65, 0.61, and 0.60 for the optimized single-event models. Index values computed from detected events correlated positively with manual annotations (r2 = 0.73, r2 = 0.77, r2 = 0.78, respectively). We furthermore quantified model accuracy based on temporal difference metrics, which improved overall by using the joint model compared to single-event models. Our automatic model jointly detects arousals, leg movements and sleep disordered breathing events with high correlation with human annotations. Finally, we benchmark against previous state-of-the-art multi-event detection models and found an overall increase in F1 score with our proposed model despite a 97.5% reduction in model size.
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36
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Lee M, Kwak HG, Kim HJ, Won DO, Lee SW. SeriesSleepNet: an EEG time series model with partial data augmentation for automatic sleep stage scoring. Front Physiol 2023; 14:1188678. [PMID: 37700762 PMCID: PMC10494443 DOI: 10.3389/fphys.2023.1188678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2023] [Accepted: 08/10/2023] [Indexed: 09/14/2023] Open
Abstract
Introduction: We propose an automatic sleep stage scoring model, referred to as SeriesSleepNet, based on convolutional neural network (CNN) and bidirectional long short-term memory (bi-LSTM) with partial data augmentation. We used single-channel raw electroencephalography signals for automatic sleep stage scoring. Methods: Our framework was focused on time series information, so we applied partial data augmentation to learn the connected time information in small series. In specific, the CNN module learns the time information of one epoch (intra-epoch) whereas the bi-LSTM trains the sequential information between the adjacent epochs (inter-epoch). Note that the input of the bi-LSTM is the augmented CNN output. Moreover, the proposed loss function was used to fine-tune the model by providing additional weights. To validate the proposed framework, we conducted two experiments using the Sleep-EDF and SHHS datasets. Results and Discussion: The results achieved an overall accuracy of 0.87 and 0.84 and overall F1-score of 0.80 and 0.78 and kappa value of 0.81 and 0.78 for five-class classification, respectively. We showed that the SeriesSleepNet was superior to the baselines based on each component in the proposed framework. Our architecture also outperformed the state-of-the-art methods with overall F1-score, accuracy, and kappa value. Our framework could provide information on sleep disorders or quality of sleep to automatically classify sleep stages with high performance.
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Affiliation(s)
- Minji Lee
- Department of Biomedical Software Engineering, The Catholic University of Korea, Bucheon, Republic of Korea
| | - Heon-Gyu Kwak
- Department of Artificial Intelligence, Korea University, Seoul, Republic of Korea
| | - Hyeong-Jin Kim
- Department of Brain and Cognitive Engineering, Korea University, Seoul, Republic of Korea
| | - Dong-Ok Won
- Department of Artificial Intelligence Convergence, Hallym University, Chuncheon, Republic of Korea
| | - Seong-Whan Lee
- Department of Artificial Intelligence, Korea University, Seoul, Republic of Korea
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Yao H, Liu T, Zou R, Ding S, Xu Y. A Spatial-Temporal Transformer Architecture Using Multi-Channel Signals for Sleep Stage Classification. IEEE Trans Neural Syst Rehabil Eng 2023; 31:3353-3362. [PMID: 37578925 DOI: 10.1109/tnsre.2023.3305201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/16/2023]
Abstract
Sleep stage classification is a fundamental task in diagnosing and monitoring sleep diseases. There are 2 challenges that remain open: (1) Since most methods only rely on input from a single channel, the spatial-temporal relationship of sleep signals has not been fully explored. (2) Lack of sleep data makes models hard to train from scratch. Here, we propose a vision Transformer-based architecture to process multi-channel polysomnogram signals. The method is an end-to-end framework that consists of a spatial encoder, a temporal encoder, and an MLP head classifier. The spatial encoder using a pre-trained Vision Transformer captures spatial information from multiple PSG channels. The temporal encoder utilizing the self-attention mechanism understands transitions between nearby epochs. In addition, we introduce a tailored image generation method to extract features within multi-channel and reshape them for transfer learning. We validate our method on 3 datasets and outperform the state-of-the-art algorithms. Our method fully explores the spatial-temporal relationship among different brain regions and addresses the problem of data insufficiency in clinical environments. Benefiting from reformulating the problem as image classification, the method could be applied to other 1D-signal problems in the future.
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Yang W, Wang Y, Hu J, Yuan T. Sleep CLIP: A Multimodal Sleep Staging Model Based on Sleep Signals and Sleep Staging Labels. SENSORS (BASEL, SWITZERLAND) 2023; 23:7341. [PMID: 37687797 PMCID: PMC10490238 DOI: 10.3390/s23177341] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 08/12/2023] [Accepted: 08/21/2023] [Indexed: 09/10/2023]
Abstract
Since the release of the contrastive language-image pre-training (CLIP) model designed by the OpenAI team, it has been applied in several fields owing to its high accuracy. Sleep staging is an important method of diagnosing sleep disorders, and the completion of sleep staging tasks with high accuracy has always remained the main goal of sleep staging algorithm designers. This study is aimed at designing a multimodal model based on the CLIP model that is more suitable for sleep staging tasks using sleep signals and labels. The pre-training efforts of the model involve five different training sets. Finally, the proposed method is tested on two training sets (EDF-39 and EDF-153), with accuracies of 87.3 and 85.4%, respectively.
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Gaiduk M, Serrano Alarcón Á, Seepold R, Martínez Madrid N. Current status and prospects of automatic sleep stages scoring: Review. Biomed Eng Lett 2023; 13:247-272. [PMID: 37519865 PMCID: PMC10382458 DOI: 10.1007/s13534-023-00299-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Revised: 06/07/2023] [Accepted: 06/18/2023] [Indexed: 08/01/2023] Open
Abstract
The scoring of sleep stages is one of the essential tasks in sleep analysis. Since a manual procedure requires considerable human and financial resources, and incorporates some subjectivity, an automated approach could result in several advantages. There have been many developments in this area, and in order to provide a comprehensive overview, it is essential to review relevant recent works and summarise the characteristics of the approaches, which is the main aim of this article. To achieve it, we examined articles published between 2018 and 2022 that dealt with the automated scoring of sleep stages. In the final selection for in-depth analysis, 125 articles were included after reviewing a total of 515 publications. The results revealed that automatic scoring demonstrates good quality (with Cohen's kappa up to over 0.80 and accuracy up to over 90%) in analysing EEG/EEG + EOG + EMG signals. At the same time, it should be noted that there has been no breakthrough in the quality of results using these signals in recent years. Systems involving other signals that could potentially be acquired more conveniently for the user (e.g. respiratory, cardiac or movement signals) remain more challenging in the implementation with a high level of reliability but have considerable innovation capability. In general, automatic sleep stage scoring has excellent potential to assist medical professionals while providing an objective assessment.
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Affiliation(s)
- Maksym Gaiduk
- HTWG Konstanz – University of Applied Sciences, Alfred-Wachtel-Str.8, 78462 Konstanz, Germany
| | | | - Ralf Seepold
- HTWG Konstanz – University of Applied Sciences, Alfred-Wachtel-Str.8, 78462 Konstanz, Germany
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Liu G, Wei G, Sun S, Mao D, Zhang J, Zhao D, Tian X, Wang X, Chen N. Micro SleepNet: efficient deep learning model for mobile terminal real-time sleep staging. Front Neurosci 2023; 17:1218072. [PMID: 37575302 PMCID: PMC10416229 DOI: 10.3389/fnins.2023.1218072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2023] [Accepted: 07/07/2023] [Indexed: 08/15/2023] Open
Abstract
The real-time sleep staging algorithm that can perform inference on mobile devices without burden is a prerequisite for closed-loop sleep modulation. However, current deep learning sleep staging models have poor real-time efficiency and redundant parameters. We propose a lightweight and high-performance sleep staging model named Micro SleepNet, which takes a 30-s electroencephalography (EEG) epoch as input, without relying on contextual signals. The model features a one-dimensional group convolution with a kernel size of 1 × 3 and an Efficient Channel and Spatial Attention (ECSA) module for feature extraction and adaptive recalibration. Moreover, the model efficiently performs feature fusion using dilated convolution module and replaces the conventional fully connected layer with Global Average Pooling (GAP). These design choices significantly reduce the total number of model parameters to 48,226, with only approximately 48.95 Million Floating-point Operations per Second (MFLOPs) computation. The proposed model is conducted subject-independent cross-validation on three publicly available datasets, achieving an overall accuracy of up to 83.3%, and the Cohen Kappa is 0.77. Additionally, we introduce Class Activation Mapping (CAM) to visualize the model's attention to EEG waveforms, which demonstrate the model's ability to accurately capture feature waveforms of EEG at different sleep stages. This provides a strong interpretability foundation for practical applications. Furthermore, the Micro SleepNet model occupies approximately 100 KB of memory on the Android smartphone and takes only 2.8 ms to infer one EEG epoch, meeting the real-time requirements of sleep staging tasks on mobile devices. Consequently, our proposed model has the potential to serve as a foundation for accurate closed-loop sleep modulation.
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Affiliation(s)
- Guisong Liu
- Department of Biomedical Engineering, Bioengineering College, Chongqing University, Chongqing, China
| | - Guoliang Wei
- Department of Biomedical Engineering, Bioengineering College, Chongqing University, Chongqing, China
| | - Shuqing Sun
- Department of Biomedical Engineering, Bioengineering College, Chongqing University, Chongqing, China
| | - Dandan Mao
- Department of Sleep and Psychology, Institute of Surgery Research, Daping Hospital, Third Military Medical University (Army Medical University), Chongqing, China
| | - Jiansong Zhang
- School of Medicine, Huaqiao University, Quanzhou, Fujian, China
| | - Dechun Zhao
- College of Bioinformatics, Chongqing University of Posts and Telecommunications, Chongqing, China
| | - Xuelong Tian
- Department of Biomedical Engineering, Bioengineering College, Chongqing University, Chongqing, China
| | - Xing Wang
- Department of Biomedical Engineering, Bioengineering College, Chongqing University, Chongqing, China
| | - Nanxi Chen
- Department of Biomedical Engineering, Bioengineering College, Chongqing University, Chongqing, China
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41
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Wang Q, Lyu W, Zhou J, Yu C. Sleep condition detection and assessment with optical fiber interferometer based on machine learning. iScience 2023; 26:107244. [PMID: 37496677 PMCID: PMC10366502 DOI: 10.1016/j.isci.2023.107244] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2023] [Revised: 05/21/2023] [Accepted: 06/26/2023] [Indexed: 07/28/2023] Open
Abstract
The prevalence of sleep disorders has increased because of the fast-paced and stressful modern lifestyle, negatively impacting the quality of human life and work efficiency. It is crucial to address sleep problems. However, the current practice of diagnosing sleep disorders using polysomnography (PSG) has limitations such as complexity, large equipment, and low portability, hindering its practicality for daily use. To overcome these challenges, in this article an optical fiber sensor is proposed as a viable solution for sleep monitoring. This device offers benefits like low power consumption, non-invasiveness, absence of interference, and real-time health monitoring. We introduce the sensor with an optical fiber interferometer to capture ballistocardiography (BCG) and electrocardiogram (ECG) signals from the human body. Furthermore, a new machine learning method is proposed for sleep condition detection. Experimental results demonstrate the superior performance of this architecture and the proposed model in monitoring and assessing sleep quality.
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Affiliation(s)
- Qing Wang
- Department of Electronic and Information Engineering, The Hong Kong Polytechnic University, Kowloon, Hong Kong
| | - Weimin Lyu
- Department of Electronic and Information Engineering, The Hong Kong Polytechnic University, Kowloon, Hong Kong
| | - Jing Zhou
- Department of Electronic and Information Engineering, The Hong Kong Polytechnic University, Kowloon, Hong Kong
| | - Changyuan Yu
- Department of Electronic and Information Engineering, The Hong Kong Polytechnic University, Kowloon, Hong Kong
- Shenzhen Research Institute, The Hong Kong Polytechnic University, Shenzhen 518057, China
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42
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Choi I, Sung W. Single-Channel Ecg-Based Sleep Stage Classification With End-To-End Trainable Deep Neural Networks. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2023; 2023:1-4. [PMID: 38083334 DOI: 10.1109/embc40787.2023.10340302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
The demand for automatic sleep stage classification using easily obtainable signals like electrocardiograms (ECGs) is rising due to the growing number of sleep disorder cases. Our study examined the potential of using single-channel ECG signals for user-friendly automatic sleep stage classification. Unlike previous studies that relied on manual features such as heart rate and variability, we propose using fully neural network-based features. The proposed model uses a ContextNet-based feature encoder applied to the ECG spectrogram, and a Transformer model to capture the temporal properties of sleep cycles over the course of the night.
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43
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Einizade A, Nasiri S, Sardouie SH, Clifford GD. ProductGraphSleepNet: Sleep staging using product spatio-temporal graph learning with attentive temporal aggregation. Neural Netw 2023; 164:667-680. [PMID: 37245479 DOI: 10.1016/j.neunet.2023.05.016] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Revised: 02/23/2023] [Accepted: 05/09/2023] [Indexed: 05/30/2023]
Abstract
The classification of sleep stages plays a crucial role in understanding and diagnosing sleep pathophysiology. Sleep stage scoring relies heavily on visual inspection by an expert, which is a time-consuming and subjective procedure. Recently, deep learning neural network approaches have been leveraged to develop a generalized automated sleep staging and account for shifts in distributions that may be caused by inherent inter/intra-subject variability, heterogeneity across datasets, and different recording environments. However, these networks (mostly) ignore the connections among brain regions and disregard modeling the connections between temporally adjacent sleep epochs. To address these issues, this work proposes an adaptive product graph learning-based graph convolutional network, named ProductGraphSleepNet, for learning joint spatio-temporal graphs along with a bidirectional gated recurrent unit and a modified graph attention network to capture the attentive dynamics of sleep stage transitions. Evaluation on two public databases: the Montreal Archive of Sleep Studies (MASS) SS3; and the SleepEDF, which contain full night polysomnography recordings of 62 and 20 healthy subjects, respectively, demonstrates performance comparable to the state-of-the-art (Accuracy: 0.867;0.838, F1-score: 0.818;0.774 and Kappa: 0.802;0.775, on each database respectively). More importantly, the proposed network makes it possible for clinicians to comprehend and interpret the learned spatial and temporal connectivity graphs for sleep stages.
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Affiliation(s)
- Aref Einizade
- Department of Electrical Engineering, Sharif University of Technology, Tehran, Iran.
| | - Samaneh Nasiri
- Massachusetts General Hospital, Harvard Medical School, MA, USA
| | | | - Gari D Clifford
- Georgia Institute of Technology, GA, USA; Emory School of Medicine, GA, USA
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44
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Kang C, An S, Kim HJ, Devi M, Cho A, Hwang S, Lee HW. Age-integrated artificial intelligence framework for sleep stage classification and obstructive sleep apnea screening. Front Neurosci 2023; 17:1059186. [PMID: 37389364 PMCID: PMC10300414 DOI: 10.3389/fnins.2023.1059186] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2022] [Accepted: 05/03/2023] [Indexed: 07/01/2023] Open
Abstract
Introduction Sleep is an essential function to sustain a healthy life, and sleep dysfunction can cause various physical and mental issues. In particular, obstructive sleep apnea (OSA) is one of the most common sleep disorders and, if not treated in a timely manner, OSA can lead to critical problems such as hypertension or heart disease. Methods The first crucial step in evaluating individuals' quality of sleep and diagnosing sleep disorders is to classify sleep stages using polysomnographic (PSG) data including electroencephalography (EEG). To date, such sleep stage scoring has been mainly performed manually via visual inspection by experts, which is not only a time-consuming and laborious process but also may yield subjective results. Therefore, we have developed a computational framework that enables automatic sleep stage classification utilizing the power spectral density (PSD) features of sleep EEG based on three different learning algorithms: support vector machine, k-nearest neighbors, and multilayer perceptron (MLP). In particular, we propose an integrated artificial intelligence (AI) framework to further inform the risk of OSA based on the characteristics in automatically scored sleep stages. Given the previous finding that the characteristics of sleep EEG differ by age group, we employed a strategy of training age-specific models (younger and older groups) and a general model and comparing their performance. Results The performance of the younger age-specific group model was similar to that of the general model (and even higher than the general model at certain stages), but the performance of the older age-specific group model was rather low, suggesting that bias in individual variables, such as age bias, should be considered during model training. Our integrated model yielded an accuracy of 73% in sleep stage classification and 73% in OSA screening when MLP algorithm was applied, which indicates that patients with OSA could be screened with the corresponding accuracy level only with sleep EEG without respiration-related measures. Discussion The current outcomes demonstrate the feasibility of AI-based computational studies that when combined with advances in wearable devices and relevant technologies could contribute to personalized medicine by not only assessing an individuals' sleep status conveniently at home but also by alerting them to the risk of sleep disorders and enabling early intervention.
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Affiliation(s)
- Chaewon Kang
- Computational Medicine, System Health Science and Engineering Program, Ewha Womans University, Seoul, Republic of Korea
| | - Sora An
- Department of Communication Disorders, Ewha Womans University, Seoul, Republic of Korea
| | - Hyeon Jin Kim
- Department of Neurology, Korea University Ansan Hospital, Ansan, Republic of Korea
- Department of Neurology, Ewha Womans University School of Medicine, Seoul, Republic of Korea
| | - Maithreyee Devi
- Computational Medicine, System Health Science and Engineering Program, Ewha Womans University, Seoul, Republic of Korea
| | - Aram Cho
- Department of Nursing Science, Ewha Womans University, Seoul, Republic of Korea
| | - Sungeun Hwang
- Department of Neurology, Ewha Womans University Mogdong Hospital, Seoul, Republic of Korea
| | - Hyang Woon Lee
- Computational Medicine, System Health Science and Engineering Program, Ewha Womans University, Seoul, Republic of Korea
- Department of Neurology, Ewha Womans University School of Medicine, Seoul, Republic of Korea
- Department of Medical Science, Ewha Womans University School of Medicine and Ewha Medical Research Institute, Seoul, Republic of Korea
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45
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You Y, Chang S, Yang Z, Sun Q. PSNSleep: a self-supervised learning method for sleep staging based on Siamese networks with only positive sample pairs. Front Neurosci 2023; 17:1167723. [PMID: 37346085 PMCID: PMC10279883 DOI: 10.3389/fnins.2023.1167723] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Accepted: 05/08/2023] [Indexed: 06/23/2023] Open
Abstract
Traditional supervised learning methods require large quantities of labeled data. However, labeling sleep data according to polysomnography by well-trained sleep experts is a very tedious job. In the present day, the development of self-supervised learning methods is making significant progress in many fields. It is also possible to apply some of these methods to sleep staging. This is to remove the dependency on labeled data at the stage of representation extraction. Nevertheless, they often rely too much on negative samples for sample selection and construction. Therefore, we propose PSNSleep, a novel self-supervised learning method for sleep staging based on Siamese networks. The crucial step to the success of our method is to select appropriate data augmentations (the time shift block) to construct the positive sample pair. PSNSleep achieves satisfactory results without relying on any negative samples. We evaluate PSNSleep on Sleep-EDF and ISRUC-Sleep and achieve accuracy of 80.0% and 74.4%. The source code is publicly available at https://github.com/arthurxl/PSNSleep.
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Affiliation(s)
- Yuyang You
- School of Automation, Beijing Institute of Technology, Beijing, China
| | - Shuohua Chang
- School of Automation, Beijing Institute of Technology, Beijing, China
| | - Zhihong Yang
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Qihang Sun
- School of Automation, Beijing Institute of Technology, Beijing, China
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46
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Wenjian W, Qian X, Jun X, Zhikun H. DynamicSleepNet: a multi-exit neural network with adaptive inference time for sleep stage classification. Front Physiol 2023; 14:1171467. [PMID: 37250117 PMCID: PMC10213983 DOI: 10.3389/fphys.2023.1171467] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Accepted: 04/26/2023] [Indexed: 05/31/2023] Open
Abstract
Sleep is an essential human physiological behavior, and the quality of sleep directly affects a person's physical and mental state. In clinical medicine, sleep stage is an important basis for doctors to diagnose and treat sleep disorders. The traditional method of classifying sleep stages requires sleep experts to classify them manually, and the whole process is time-consuming and laborious. In recent years, with the help of deep learning, automatic sleep stage classification has made great progress, especially networks using multi-modal electrophysiological signals, which have greatly improved in terms of accuracy. However, we found that the existing multimodal networks have a large number of redundant calculations in the process of using multiple electrophysiological signals, and the networks become heavier due to the use of multiple signals, and difficult to be used in small devices. To solve these two problems, this paper proposes DynamicSleepNet, a network that can maximize the use of multiple electrophysiological signals and can dynamically adjust between accuracy and efficiency. DynamicSleepNet consists of three effective feature extraction modules (EFEMs) and three classifier modules, each EFEM is connected to a classifier. Each EFEM is able to extract signal features while making the effective features more prominent and the invalid features are suppressed. The samples processed by the EFEM are given to the corresponding classifier for classification, and if the classifier considers the uncertainty of the sample to be below the threshold we set, the sample can be output early without going through the whole network. We validated our model on four datasets. The results show that the highest accuracy of our model outperforms all baselines. With accuracy close to baselines, our model is faster than the baselines by a factor of several to several tens, and the number of parameters of the model is lower or close. The implementation code is available at: https://github.com/Quinella7291/A-Multi-exit-Neural-Network-with-Adaptive-Inference-Time-for-Sleep-Stage-Classification/.
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47
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Zhu H, Fu C, Shu F, Yu H, Chen C, Chen W. The Effect of Coupled Electroencephalography Signals in Electrooculography Signals on Sleep Staging Based on Deep Learning Methods. Bioengineering (Basel) 2023; 10:bioengineering10050573. [PMID: 37237643 DOI: 10.3390/bioengineering10050573] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Revised: 04/20/2023] [Accepted: 04/26/2023] [Indexed: 05/28/2023] Open
Abstract
The influence of the coupled electroencephalography (EEG) signal in electrooculography (EOG) on EOG-based automatic sleep staging has been ignored. Since the EOG and prefrontal EEG are collected at close range, it is not clear whether EEG couples in EOG or not, and whether or not the EOG signal can achieve good sleep staging results due to its intrinsic characteristics. In this paper, the effect of a coupled EEG signal in an EOG signal on automatic sleep staging is explored. The blind source separation algorithm was used to extract a clean prefrontal EEG signal. Then the raw EOG signal and clean prefrontal EEG signal were processed to obtain EOG signals coupled with different EEG signal contents. Afterwards, the coupled EOG signals were fed into a hierarchical neural network, including a convolutional neural network and recurrent neural network for automatic sleep staging. Finally, an exploration was performed using two public datasets and one clinical dataset. The results showed that using a coupled EOG signal could achieve an accuracy of 80.4%, 81.1%, and 78.9% for the three datasets, slightly better than the accuracy of sleep staging using the EOG signal without coupled EEG. Thus, an appropriate content of coupled EEG signal in an EOG signal improved the sleep staging results. This paper provides an experimental basis for sleep staging with EOG signals.
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Affiliation(s)
- Hangyu Zhu
- School of Information Science and Technology, Fudan University, Shanghai 200433, China
| | - Cong Fu
- Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai 200040, China
| | - Feng Shu
- Academy for Engineering and Technology, Fudan University, Shanghai 200433, China
| | - Huan Yu
- Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai 200040, China
| | - Chen Chen
- Human Phenome Institute, Fudan University, Shanghai 201203, China
| | - Wei Chen
- School of Information Science and Technology, Fudan University, Shanghai 200433, China
- Human Phenome Institute, Fudan University, Shanghai 201203, China
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48
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Gao DR, Li J, Wang MQ, Wang LT, Zhang YQ. Automatic sleep staging of single-channel EEG based on domain adversarial neural networks and domain self-attention. Front Neurosci 2023; 17:1143495. [PMID: 37090812 PMCID: PMC10117677 DOI: 10.3389/fnins.2023.1143495] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Accepted: 03/13/2023] [Indexed: 04/09/2023] Open
Abstract
The diagnosis and management of sleep problems depend heavily on sleep staging. For autonomous sleep staging, many data-driven deep learning models have been presented by trying to construct a large-labeled auxiliary sleep dataset and test it by electroencephalograms on different subjects. These approaches suffer a significant setback cause it assumes the training and test data come from the same or similar distribution. However, this is almost impossible in scenario cross-dataset due to inherent domain shift between domains. Unsupervised domain adaption was recently created to address the domain shift issue. However, only a few customized UDA solutions for sleep staging due to two limitations in previous UDA methods. First, the domain classifier does not consider boundaries between classes. Second, they depend on a shared model to align the domain that could miss the information of domains when extracting features. Given those restrictions, we present a novel UDA approach that combines category decision boundaries and domain discriminator to align the distributions of source and target domains. Also, to keep the domain-specific features, we create an unshared attention method. In addition, we investigated effective data augmentation in cross-dataset sleep scenarios. The experimental results on three datasets validate the efficacy of our approach and show that the proposed method is superior to state-of-the-art UDA methods on accuracy and MF1-Score.
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Affiliation(s)
- Dong-Rui Gao
- School of Computer Science, Chengdu University of Information Technology, Chengdu, China
- School of Life Sciences and Technology, University of Electronic Science and Technology of China, Chengdu, China
| | - Jing Li
- School of Computer Science, Chengdu University of Information Technology, Chengdu, China
| | - Man-Qing Wang
- School of Computer Science, Chengdu University of Information Technology, Chengdu, China
- School of Life Sciences and Technology, University of Electronic Science and Technology of China, Chengdu, China
| | - Lu-Tao Wang
- School of Computer Science, Chengdu University of Information Technology, Chengdu, China
| | - Yong-Qing Zhang
- School of Computer Science, Chengdu University of Information Technology, Chengdu, China
- *Correspondence: Yong-Qing Zhang
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49
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Gaugel S, Reichert M. Industrial Transfer Learning for Multivariate Time Series Segmentation: A Case Study on Hydraulic Pump Testing Cycles. SENSORS (BASEL, SWITZERLAND) 2023; 23:3636. [PMID: 37050695 PMCID: PMC10098779 DOI: 10.3390/s23073636] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/05/2023] [Revised: 02/22/2023] [Accepted: 03/01/2023] [Indexed: 06/19/2023]
Abstract
Industrial data scarcity is one of the largest factors holding back the widespread use of machine learning in manufacturing. To overcome this problem, the concept of transfer learning was developed and has received much attention in recent industrial research. This paper focuses on the problem of time series segmentation and presents the first in-depth research on transfer learning for deep learning-based time series segmentation on the industrial use case of end-of-line pump testing. In particular, we investigate whether the performance of deep learning models can be increased by pretraining the network with data from other domains. Three different scenarios are analyzed: source and target data being closely related, source and target data being distantly related, and source and target data being non-related. The results demonstrate that transfer learning can enhance the performance of time series segmentation models with respect to accuracy and training speed. The benefit can be most clearly seen in scenarios where source and training data are closely related and the number of target training data samples is lowest. However, in the scenario of non-related datasets, cases of negative transfer learning were observed as well. Thus, the research emphasizes the potential, but also the challenges, of industrial transfer learning.
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Affiliation(s)
- Stefan Gaugel
- Bosch Rexroth AG, 89081 Ulm, Germany
- Institute of Databases and Information Systems, Ulm University, 89081 Ulm, Germany
| | - Manfred Reichert
- Institute of Databases and Information Systems, Ulm University, 89081 Ulm, Germany
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50
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Huang X, Shirahama K, Irshad MT, Nisar MA, Piet A, Grzegorzek M. Sleep Stage Classification in Children Using Self-Attention and Gaussian Noise Data Augmentation. SENSORS (BASEL, SWITZERLAND) 2023; 23:3446. [PMID: 37050506 PMCID: PMC10098613 DOI: 10.3390/s23073446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Revised: 03/20/2023] [Accepted: 03/22/2023] [Indexed: 06/19/2023]
Abstract
The analysis of sleep stages for children plays an important role in early diagnosis and treatment. This paper introduces our sleep stage classification method addressing the following two challenges: the first is the data imbalance problem, i.e., the highly skewed class distribution with underrepresented minority classes. For this, a Gaussian Noise Data Augmentation (GNDA) algorithm was applied to polysomnography recordings to seek the balance of data sizes for different sleep stages. The second challenge is the difficulty in identifying a minority class of sleep stages, given their short sleep duration and similarities to other stages in terms of EEG characteristics. To overcome this, we developed a DeConvolution- and Self-Attention-based Model (DCSAM) which can inverse the feature map of a hidden layer to the input space to extract local features and extract the correlations between all possible pairs of features to distinguish sleep stages. The results on our dataset show that DCSAM based on GNDA obtains an accuracy of 90.26% and a macro F1-score of 86.51% which are higher than those of our previous method. We also tested DCSAM on a well-known public dataset-Sleep-EDFX-to prove whether it is applicable to sleep data from adults. It achieves a comparable performance to state-of-the-art methods, especially accuracies of 91.77%, 92.54%, 94.73%, and 95.30% for six-stage, five-stage, four-stage, and three-stage classification, respectively. These results imply that our DCSAM based on GNDA has a great potential to offer performance improvements in various medical domains by considering the data imbalance problems and correlations among features in time series data.
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Affiliation(s)
- Xinyu Huang
- Institute of Medical Informatics, University of Lübeck, Ratzeburger Allee 160, 23562 Lübeck, Germany
| | - Kimiaki Shirahama
- Department of Informatics, Kindai University, 3-4-1 Kowakae, Higashiosaka City 577-8502, Osaka, Japan
| | - Muhammad Tausif Irshad
- Institute of Medical Informatics, University of Lübeck, Ratzeburger Allee 160, 23562 Lübeck, Germany
- Department of IT, University of the Punjab, Lahore 54000, Pakistan
| | | | - Artur Piet
- Institute of Medical Informatics, University of Lübeck, Ratzeburger Allee 160, 23562 Lübeck, Germany
| | - Marcin Grzegorzek
- Institute of Medical Informatics, University of Lübeck, Ratzeburger Allee 160, 23562 Lübeck, Germany
- Department of Knowledge Engineering, University of Economics, Bogucicka 3, 40287 Katowice, Poland
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