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Omidvar A, Rohling R, Cretu E, Cresswell M, Hodgson AJ. Shape estimation of flexible ultrasound arrays using spatial coherence: A preliminary study. ULTRASONICS 2024; 136:107171. [PMID: 37774644 DOI: 10.1016/j.ultras.2023.107171] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 09/19/2023] [Accepted: 09/20/2023] [Indexed: 10/01/2023]
Abstract
A flexible ultrasound array can potentially provide a larger field-of-view, enhanced imaging resolution, and less operator dependency compared to conventional rigid transducer arrays. However, such transducer arrays require information about relative element positions for beamforming and reconstructing geometrically accurate sonograms. In this study, we assess the potential utility of using spatial coherence of backscattered radiofrequency data to estimate transducer array shape (inverse problem). The methodology is evaluated through 1) simulation of flexible arrays and 2) blinded in vivo experiments using commercial rigid transducer arrays on various anatomical targets (shoulder, forearm, scapular, posterior calf muscles, and abdomen) and multi-purpose ultrasound phantoms. The average Euclidean error of shape estimation is below 0.1 wavelengths for simulated arrays and below 1.4 wavelengths (median: 0.58 wavelengths) for real arrays. The complex wavelet structural similarity index between the B-mode images reconstructed with estimated and ground truth array shapes is above 99 % and 96 %, for simulations and experiments, respectively. These findings suggest that optimizing for spatial coherence may be an effective way to estimate the unknown shape of conformal ultrasound arrays.
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Affiliation(s)
- Amirhossein Omidvar
- School of Biomedical Engineering, University of British Columbia, Vancouver, Canada.
| | - Robert Rohling
- Department of Electrical and Computer Engineering, University of British Columbia, Vancouver, Canada; Department of Mechanical Engineering, University of British Columbia, Vancouver, Canada.
| | - Edmond Cretu
- Department of Electrical and Computer Engineering, University of British Columbia, Vancouver, Canada.
| | - Mark Cresswell
- Department of Radiology, University of British Columbia, Vancouver, Canada; St. Paul's Hospital, Vancouver, Canada.
| | - Antony J Hodgson
- School of Biomedical Engineering, University of British Columbia, Vancouver, Canada; Department of Mechanical Engineering, University of British Columbia, Vancouver, Canada.
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Long J, Trahey G, Bottenus N. Spatial Coherence in Medical Ultrasound: A Review. ULTRASOUND IN MEDICINE & BIOLOGY 2022; 48:975-996. [PMID: 35282988 PMCID: PMC9067166 DOI: 10.1016/j.ultrasmedbio.2022.01.009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Revised: 01/10/2022] [Accepted: 01/16/2022] [Indexed: 05/28/2023]
Abstract
Traditional pulse-echo ultrasound imaging heavily relies on the discernment of signals based on their relative magnitudes but is limited in its ability to mitigate sources of image degradation, the most prevalent of which is acoustic clutter. Advances in computing power and data storage have made it possible for echo data to be alternatively analyzed through the lens of spatial coherence, a measure of the similarity of these signals received across an array. Spatial coherence is not currently explicitly calculated on diagnostic ultrasound scanners but a large number of studies indicate that it can be employed to describe image quality, to adaptively select system parameters and to improve imaging and target detection. With the additional insights provided by spatial coherence, it is poised to play a significant role in the future of medical ultrasound. This review details the theory of spatial coherence in pulse-echo ultrasound and key advances made over the last few decades since its introduction in the 1980s.
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Affiliation(s)
- James Long
- Department of Biomedical Engineering, Duke University, Durham, North Carolina, USA.
| | - Gregg Trahey
- Department of Biomedical Engineering, Duke University, Durham, North Carolina, USA
| | - Nick Bottenus
- Department of Mechanical Engineering, University of Colorado Boulder, Boulder, Colorado, USA
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Ahmed R, Bottenus N, Long J, Trahey GE. Reverberation Clutter Suppression Using 2-D Spatial Coherence Analysis. IEEE TRANSACTIONS ON ULTRASONICS, FERROELECTRICS, AND FREQUENCY CONTROL 2022; 69:84-97. [PMID: 34437060 PMCID: PMC8845080 DOI: 10.1109/tuffc.2021.3108059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Diffuse reverberation clutter often significantly degrades the visibility of abdominal structures. Reverberation clutter acts as a temporally stationary haze that originates from the multiple scattering within the subcutaneous layers and has a narrow spatial correlation length. We recently presented an adaptive beamforming technique, Lag-one Spatial Coherence Adaptive Normalization (LoSCAN), which can recover the contrast suppressed by incoherent noise. LoSCAN successfully suppressed reverberation clutter in numerous clinical examples. However, reverberation clutter is a 3-D phenomenon and can often exhibit a finite partial correlation between receive channels. Due to a strict noise-incoherence assumption, LoSCAN does not eliminate correlated reverberation clutter. This work presents a 2-D matrix array-based LoSCAN method and evaluates matrix-LoSCAN-based strategies to suppress partially correlated reverberation clutter. We validated the proposed matrix LoSCAN method using Field II simulations of a 64×64 symmetric 2-D array. We show that a subaperture beamforming (SAB) method tuned to the direction of noise correlation is an effective method to enhance LoSCAN's performance. We evaluated the efficacy of the proposed methods using fundamental and harmonic channel data acquired from the liver of two healthy volunteers using a 64×16 custom 2-D array. Compared to azimuthal LoSCAN, the proposed approach increased the contrast by up to 5.5 dB and the generalized contrast-to-noise ratio (gCNR) by up to 0.07. We also present analytic models to understand the impact of partially correlated reverberation clutter on LoSCAN images and explain the proposed methods' mechanism of image quality improvement.
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Carlino C, Kuppuswamy S, McCray L, Aggarwal K, Alpert MA. Comparative feasibility of dobutamine stress echocardiography performed with and without intravenous contrast in patients with class III obesity. Echocardiography 2021; 39:20-27. [DOI: 10.1111/echo.15207] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2021] [Revised: 08/10/2021] [Accepted: 08/30/2021] [Indexed: 01/21/2023] Open
Affiliation(s)
- Carl Carlino
- Division of Cardiovascular Medicine University of Missouri School of Medicine Columbia Missouri USA
| | - Saravanan Kuppuswamy
- Division of Cardiovascular Medicine University of Missouri School of Medicine Columbia Missouri USA
| | - Lerin McCray
- Division of Cardiovascular Medicine University of Missouri School of Medicine Columbia Missouri USA
| | - Kul Aggarwal
- Division of Cardiovascular Medicine University of Missouri School of Medicine Columbia Missouri USA
| | - Martin A. Alpert
- Division of Cardiovascular Medicine University of Missouri School of Medicine Columbia Missouri USA
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Matrone G, Bell MAL, Ramalli A. Spatial Coherence Beamforming With Multi-Line Transmission to Enhance the Contrast of Coherent Structures in Ultrasound Images Degraded by Acoustic Clutter. IEEE TRANSACTIONS ON ULTRASONICS, FERROELECTRICS, AND FREQUENCY CONTROL 2021; 68:3570-3582. [PMID: 34310298 DOI: 10.1109/tuffc.2021.3099730] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
This work demonstrates that the combination of multi-line transmission (MLT) and short-lag spatial coherence (SLSC) imaging improves the contrast of highly coherent structures within soft tissues when compared to both traditional SLSC imaging and conventional delay and sum (DAS) beamforming. Experimental tests with small (i.e., [Formula: see text]-3 mm) targets embedded in homogeneous and heterogeneous backgrounds were conducted. DAS or SLSC images were reconstructed when implementing MLT with varying numbers of simultaneously transmitted beams. In images degraded by acoustic clutter, MLT SLSC achieved up to 34.1 dB better target contrast and up to 16 times higher frame rates when compared to the more conventional single-line transmission SLSC images, with lateral resolution improvements as large as 38.2%. MLT SLSC thus represents a promising technique for clinical applications in which ultrasound visualization of highly coherent targets is required (e.g., breast microcalcifications, kidney stones, and percutaneous biopsy needle tracking) and would otherwise be challenging due to the strong presence of acoustic clutter.
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Ikeda T, Hisatsu M, Ishihara C, Kuribara H. Use of Intertransmission Coherence for Haze Artifact Suppression in Cardiovascular Synthetic Aperture Ultrasound Imaging. IEEE TRANSACTIONS ON ULTRASONICS, FERROELECTRICS, AND FREQUENCY CONTROL 2021; 68:3283-3298. [PMID: 34115586 DOI: 10.1109/tuffc.2021.3088678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Synthetic aperture (SA) beamforming is a principal technology of modern medical ultrasound imaging. In that the use of focused transmission provides superior signal-to-noise ratio (SNR) and is promising for cardiovascular diagnosis at the maximum imaging depth of about 160 mm. But there is a pitfall in increasing the frame rate to more than 80 frames per second (frames/s) without image degradation by the haze artifact produced when the transmit foci (SA virtual sources) placed within the imaging field. We hypothesize that the source of this artifact is a grating lobe caused by coarse (decimated) multiple transmission and manifesting in the low brightness region in the accelerated-frame-rate images. We propose an intertransmission coherence factor (ITCF) method suppressing haze artifacts caused by coarse-pitch multiple transmission. The method is expected to suppress the image blurring because the SA grating lobe signal is less coherent than the main lobe signals. We evaluated an ITCF algorithm for suppressing the grating artifact when the transmission pitch is up to four times larger than the normal pitch (equivalent to 160 frames/s). In in-vitro and in-vivo experiments, we demonstrated the strong relation of haze artifact with the grating lobe due to the coarse-pitch transmission. Then, we confirmed that the ITCF method suppresses the haze artifact of a human heart by 15 dB while preserving the spatial resolution. The ITCF method combined with focused transmission SA beamforming is a valid method for getting cardiovascular ultrasound B-mode images without making a compromise in the trade-off relationship between the frame rate and the SNR.
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Brickson LL, Hyun D, Jakovljevic M, Dahl JJ. Reverberation Noise Suppression in Ultrasound Channel Signals Using a 3D Fully Convolutional Neural Network. IEEE TRANSACTIONS ON MEDICAL IMAGING 2021; 40:1184-1195. [PMID: 33400649 PMCID: PMC8500501 DOI: 10.1109/tmi.2021.3049307] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Diffuse reverberation is ultrasound image noise caused by multiple reflections of the transmitted pulse before returning to the transducer, which degrades image quality and impedes the estimation of displacement or flow in techniques such as elastography and Doppler imaging. Diffuse reverberation appears as spatially incoherent noise in the channel signals, where it also degrades the performance of adaptive beamforming methods, sound speed estimation, and methods that require measurements from channel signals. In this paper, we propose a custom 3D fully convolutional neural network (3DCNN) to reduce diffuse reverberation noise in the channel signals. The 3DCNN was trained with channel signals from simulations of random targets that include models of reverberation and thermal noise. It was then evaluated both on phantom and in-vivo experimental data. The 3DCNN showed improvements in image quality metrics such as generalized contrast to noise ratio (GCNR), lag one coherence (LOC) contrast-to-noise ratio (CNR) and contrast for anechoic regions in both phantom and in-vivo experiments. Visually, the contrast of anechoic regions was greatly improved. The CNR was improved in some cases, however the 3DCNN appears to strongly remove uncorrelated and low amplitude signal. In images of in-vivo carotid artery and thyroid, the 3DCNN was compared to short-lag spatial coherence (SLSC) imaging and spatial prediction filtering (FXPF) and demonstrated improved contrast, GCNR, and LOC, while FXPF only improved contrast and SLSC only improved CNR.
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Jakovljevic M, Yoon BC, Abou-Elkacem L, Hyun D, Li Y, Rubesova E, Dahl JJ. Blood Flow Imaging in the Neonatal Brain Using Angular Coherence Power Doppler. IEEE TRANSACTIONS ON ULTRASONICS, FERROELECTRICS, AND FREQUENCY CONTROL 2021; 68:92-106. [PMID: 32746214 PMCID: PMC7864118 DOI: 10.1109/tuffc.2020.3010341] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Using ultrasound to image small vessels in the neonatal brain can be difficult in the presence of strong clutter from the surrounding tissue and with a neonate motion during the scan. We propose a coherence-based beamforming method, namely the short-lag angular coherence (SLAC) beamforming that suppresses incoherent noise and motion artifacts in Ultrafast data, and we demonstrate its applicability to improve detection of blood flow in the neonatal brain. Instead of estimating spatial coherence across the receive elements, SLAC utilizes the principle of acoustic reciprocity to estimate angular coherence from the beamsummed signals from different plane-wave transmits, which makes it computationally efficient and amenable to advanced beamforming techniques, such as f-k migration. The SLAC images of a simulated speckle phantom show similar edge resolution and texture size as the matching B-mode images, and reduced random noise in the background. We apply SLAC power Doppler (PD) to free-hand imaging of neonatal brain vasculature with long Doppler ensembles and show that: 1) it improves visualization of small vessels in the cortex compared to conventional PD and 2) it can be used for tracking of blood flow in the brain over time, meaning it could potentially improve the quality of free-hand functional ultrasound.
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Wiacek A, Gonzalez E, Bell MAL. CohereNet: A Deep Learning Architecture for Ultrasound Spatial Correlation Estimation and Coherence-Based Beamforming. IEEE TRANSACTIONS ON ULTRASONICS, FERROELECTRICS, AND FREQUENCY CONTROL 2020; 67:2574-2583. [PMID: 32203018 PMCID: PMC8034551 DOI: 10.1109/tuffc.2020.2982848] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Deep fully connected networks are often considered "universal approximators" that are capable of learning any function. In this article, we utilize this particular property of deep neural networks (DNNs) to estimate normalized cross correlation as a function of spatial lag (i.e., spatial coherence functions) for applications in coherence-based beamforming, specifically short-lag spatial coherence (SLSC) beamforming. We detail the composition, assess the performance, and evaluate the computational efficiency of CohereNet, our custom fully connected DNN, which was trained to estimate the spatial coherence functions of in vivo breast data from 18 unique patients. CohereNet performance was evaluated on in vivo breast data from three additional patients who were not included during training, as well as data from in vivo liver and tissue mimicking phantoms scanned with a variety of ultrasound transducer array geometries and two different ultrasound systems. The mean correlation between the SLSC images computed on a central processing unit (CPU) and the corresponding DNN SLSC images created with CohereNet was 0.93 across the entire test set. The DNN SLSC approach was up to 3.4 times faster than the CPU SLSC approach, with similar computational speed, less variability in computational times, and improved image quality compared with a graphical processing unit (GPU)-based SLSC approach. These results are promising for the application of deep learning to estimate correlation functions derived from ultrasound data in multiple areas of ultrasound imaging and beamforming (e.g., speckle tracking, elastography, and blood flow estimation), possibly replacing GPU-based approaches in low-power, remote, and synchronization-dependent applications.
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Long W, Bottenus N, Trahey GE. Incoherent Clutter Suppression Using Lag-One Coherence. IEEE TRANSACTIONS ON ULTRASONICS, FERROELECTRICS, AND FREQUENCY CONTROL 2020; 67:1544-1557. [PMID: 32142428 PMCID: PMC8033959 DOI: 10.1109/tuffc.2020.2977200] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
The lag-one coherence (LOC), derived from the correlation between the nearest-neighbor channel signals, provides a reliable measure of clutter which, under certain assumptions, can be directly related to the signal-to-noise ratio of individual channel signals. This offers a direct means to decompose the beamsum output power into contributions from speckle and spatially incoherent noise originating from acoustic clutter and thermal noise. In this study, we applied a novel method called lag-one spatial coherence adaptive normalization (LoSCAN) to locally estimate and compensate for the contribution of spatially incoherent clutter from conventional delay-and-sum (DAS) images. Suppression of incoherent clutter by LoSCAN resulted in improved image quality without introducing many of the artifacts common to other adaptive imaging methods. In simulations with known targets and added channel noise, LoSCAN was shown to restore native contrast and increase DAS dynamic range by as much as 10-15 dB. These improvements were accompanied by DAS-like speckle texture along with reduced focal dependence and artifact compared with other adaptive methods. Under in vivo liver and fetal imaging conditions, LoSCAN resulted in increased generalized contrast-to-noise ratio (gCNR) in nearly all matched image pairs ( N = 366 ) with average increases of 0.01, 0.03, and 0.05 in good-, fair-, and poor-quality DAS images, respectively, and overall changes in gCNR from -0.01 to 0.20, contrast-to-noise ratio (CNR) from -0.05 to 0.34, contrast from -9.5 to -0.1 dB, and texture μ/σ from -0.37 to -0.001 relative to DAS.
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Gonzalez EA, Bell MAL. GPU implementation of photoacoustic short-lag spatial coherence imaging for improved image-guided interventions. JOURNAL OF BIOMEDICAL OPTICS 2020; 25:1-19. [PMID: 32713168 PMCID: PMC7381831 DOI: 10.1117/1.jbo.25.7.077002] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Accepted: 06/29/2020] [Indexed: 05/04/2023]
Abstract
SIGNIFICANCE Photoacoustic-based visual servoing is a promising technique for surgical tool tip tracking and automated visualization of photoacoustic targets during interventional procedures. However, one outstanding challenge has been the reliability of obtaining segmentations using low-energy light sources that operate within existing laser safety limits. AIM We developed the first known graphical processing unit (GPU)-based real-time implementation of short-lag spatial coherence (SLSC) beamforming for photoacoustic imaging and applied this real-time algorithm to improve signal segmentation during photoacoustic-based visual servoing with low-energy lasers. APPROACH A 1-mm-core-diameter optical fiber was inserted into ex vivo bovine tissue. Photoacoustic-based visual servoing was implemented as the fiber was manually displaced by a translation stage, which provided ground truth measurements of the fiber displacement. GPU-SLSC results were compared with a central processing unit (CPU)-SLSC approach and an amplitude-based delay-and-sum (DAS) beamforming approach. Performance was additionally evaluated with in vivo cardiac data. RESULTS The GPU-SLSC implementation achieved frame rates up to 41.2 Hz, representing a factor of 348 speedup when compared with offline CPU-SLSC. In addition, GPU-SLSC successfully recovered low-energy signals (i.e., ≤268 μJ) with mean ± standard deviation of signal-to-noise ratios of 11.2 ± 2.4 (compared with 3.5 ± 0.8 with conventional DAS beamforming). When energies were lower than the safety limit for skin (i.e., 394.6 μJ for 900-nm wavelength laser light), the median and interquartile range (IQR) of visual servoing tracking errors obtained with GPU-SLSC were 0.64 and 0.52 mm, respectively (which were lower than the median and IQR obtained with DAS by 1.39 and 8.45 mm, respectively). GPU-SLSC additionally reduced the percentage of failed segmentations when applied to in vivo cardiac data. CONCLUSIONS Results are promising for the use of low-energy, miniaturized lasers to perform GPU-SLSC photoacoustic-based visual servoing in the operating room with laser pulse repetition frequencies as high as 41.2 Hz.
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Affiliation(s)
- Eduardo A. Gonzalez
- Johns Hopkins University, School of Medicine, Department of Biomedical Engineering, Baltimore, Maryland, United States
| | - Muyinatu A. Lediju Bell
- Johns Hopkins University, School of Medicine, Department of Biomedical Engineering, Baltimore, Maryland, United States
- Johns Hopkins University, Whiting School of Engineering, Department of Electrical and Computer Engineering, Baltimore, Maryland, United States
- Johns Hopkins University, Whiting School of Engineering, Department of Computer Science, Baltimore, Maryland, United States
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