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West G, Haslinger S, Bamber J, Lowe M, Huthwaite P, Harris E. Simulation of ultrasound backscatter coefficient measurement using the finite element method. ULTRASONICS 2024; 143:107394. [PMID: 39053241 DOI: 10.1016/j.ultras.2024.107394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2023] [Revised: 06/26/2024] [Accepted: 06/27/2024] [Indexed: 07/27/2024]
Abstract
Ultrasound backscatter coefficient (BSC) measurement is a method for assessing tissue morphology that can inform on pathologies such as cancer. The BSC measurement is, however, limited by the accuracy with which the investigator can normalise their results to account for frequency dependent effects of diffraction and attenuation whilst performing such measurements. We propose a simulation-based approach to investigate the potential sources of error in assessing the BSC. Presented is a tool for the 2D Finite Element (FE) simulation mimicking a BSC measurement using the planar reflector substitution method in reduced dimensionality. The results of this are verified against new derivations of BSC equations also in reduced dimensionality. These new derivations allow computation of BSC estimates based on the scattering from a 2D scattering area, a line reference reflector and a theoretical value for the BSC of a 2D distribution of scatterers. This 2D model was designed to generate lightweight simulations that allow rapid investigation of the factors associated with BSC measurement, allowing the investigator to generate large data sets in relatively short time scales. Under the conditions for an incoherent scattering medium, the simulations produced BSC estimates within 6% of the theoretical value calculated from the simulation domain, a result reproduced across a range of source f-numbers. This value of error compares well to both estimated errors from other simulation based approaches and to physical experiments. The mathematical and simulation models described here provide a theoretical and experimental framework for continued investigation into factors affecting the accuracy of BSC measurements.
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Affiliation(s)
- George West
- Joint Department of Physics, Institute of Cancer Research and Royal Marsden NHS Foundation Trust, London, SM2 5NG, United Kingdom; Department of Mechanical Engineering, Imperial College London, London, SW7 2BX, United Kingdom
| | - Stewart Haslinger
- Department of Mathematics, The University of Liverpool, Liverpool, L69 3BX, United Kingdom
| | - Jeffrey Bamber
- Joint Department of Physics, Institute of Cancer Research and Royal Marsden NHS Foundation Trust, London, SM2 5NG, United Kingdom
| | - Michael Lowe
- Department of Mechanical Engineering, Imperial College London, London, SW7 2BX, United Kingdom
| | - Peter Huthwaite
- Department of Mechanical Engineering, Imperial College London, London, SW7 2BX, United Kingdom
| | - Emma Harris
- Joint Department of Physics, Institute of Cancer Research and Royal Marsden NHS Foundation Trust, London, SM2 5NG, United Kingdom.
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Zhao Y, Czarnota GJ, Park TH, Miller RJ, Oelze ML. In Vivo Validation of an In Situ Calibration Bead as a Reference for Backscatter Coefficient Calculation. ULTRASOUND IN MEDICINE & BIOLOGY 2024; 50:833-842. [PMID: 38471999 DOI: 10.1016/j.ultrasmedbio.2024.02.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 01/26/2024] [Accepted: 02/08/2024] [Indexed: 03/14/2024]
Abstract
OBJECTIVE The study described here was aimed at assessing the capability of quantitative ultrasound (QUS) based on the backscatter coefficient (BSC) for classifying disease states, such as breast cancer response to neoadjuvant chemotherapy and quantification of fatty liver disease. We evaluated the effectiveness of an in situ titanium (Ti) bead as a reference target in calibrating the system and mitigating attenuation and transmission loss effects on BSC estimation. METHODS Traditional BSC estimation methods require external references for calibration, which do not account for ultrasound attenuation or transmission losses through tissues. To address this issue, we used an in situ Ti bead as a reference target, because it can be used to calibrate the system and mitigate the attenuation and transmission loss effects on estimation of the BSC. The capabilities of the in situ calibration approach were assessed by quantifying consistency of BSC estimates from rabbit mammary tumors (N = 21). Specifically, mammary tumors were grown in rabbits and when a tumor reached ≥1 cm in size, a 2 mm Ti bead was implanted in the tumor as a radiological marker and a calibration source for ultrasound. Three days later, the tumors were scanned with an L-14/5 38 array transducer connected to a SonixOne scanner with and without a slab of pork belly placed on top of the tumors. The pork belly acted as an additional source of attenuation and transmission loss. QUS parameters, specifically effective scatterer diameter (ESD) and effective acoustic concentration (EAC), were calculated using calibration spectra from both an external reference phantom and the Ti bead. RESULTS For ESD estimation, the 95% confidence interval between measurements with and without the pork belly layer was 6.0, 27.4 using the in situ bead and 114, 135.1 with the external reference phantom. For EAC estimation, the 95% confidence intervals were -8.1, 0.5 for the bead and -41.5, -32.2 for the phantom. These results indicate that the in situ bead method has reduced bias in QUS estimates because of intervening tissue losses. CONCLUSION The use of an in situ Ti bead as a radiological marker not only serves its traditional role but also effectively acts as a calibration target for QUS methods. This approach accounts for attenuation and transmission losses in tissue, resulting in more accurate QUS estimates and offering a promising method for enhanced disease state classification in clinical settings.
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Affiliation(s)
- Yuning Zhao
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA; Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Gregory J Czarnota
- Department of Medical Biophysics and Radiation Oncology, University of Toronto, Toronto, ON, Canada; Department of Imaging Research and Radiation Oncology, Sunnybrook Health Sciences Centre, Toronto, ON, Canada
| | | | - Rita J Miller
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA; Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Michael L Oelze
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA; Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, USA; Carle Illinois College of Medicine, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
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Liu M, Kou Z, Wiskin JW, Czarnota GJ, Oelze ML. Spectral-based Quantitative Ultrasound Imaging Processing Techniques: Comparisons of RF Versus IQ Approaches. ULTRASONIC IMAGING 2024; 46:75-89. [PMID: 38318705 PMCID: PMC10962227 DOI: 10.1177/01617346231226224] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2024]
Abstract
Quantitative ultrasound (QUS) is an imaging technique which includes spectral-based parameterization. Typical spectral-based parameters include the backscatter coefficient (BSC) and attenuation coefficient slope (ACS). Traditionally, spectral-based QUS relies on the radio frequency (RF) signal to calculate the spectral-based parameters. Many clinical and research scanners only provide the in-phase and quadrature (IQ) signal. To acquire the RF data, the common approach is to convert IQ signal back into RF signal via mixing with a carrier frequency. In this study, we hypothesize that the performance, that is, accuracy and precision, of spectral-based parameters calculated directly from IQ data is as good as or better than using converted RF data. To test this hypothesis, estimation of the BSC and ACS using RF and IQ data from software, physical phantoms and in vivo rabbit data were analyzed and compared. The results indicated that there were only small differences in estimates of the BSC between when using the original RF, the IQ derived from the original RF and the RF reconverted from the IQ, that is, root mean square errors (RMSEs) were less than 0.04. Furthermore, the structural similarity index measure (SSIM) was calculated for ACS maps with a value greater than 0.96 for maps created using the original RF, IQ data and reconverted RF. On the other hand, the processing time using the IQ data compared to RF data were substantially less, that is, reduced by more than a factor of two. Therefore, this study confirms two things: (1) there is no need to convert IQ data back to RF data for conducting spectral-based QUS analysis, because the conversion from IQ back into RF data can introduce artifacts. (2) For the implementation of real-time QUS, there is an advantage to convert the original RF data into IQ data to conduct spectral-based QUS analysis because IQ data-based QUS can improve processing speed.
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Affiliation(s)
- Mingrui Liu
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801 USA
- Beckman Institute, University of Illinois at Urbana-Champaign, Urbana, IL 61801 USA
| | - Zhengchang Kou
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801 USA
| | | | - Gregory J. Czarnota
- Department of Medical Biophysics and Radiation Oncology, University of Toronto, Toronto, Canada
- Department of Imaging Research and Radiation Oncology, Sunnybrook Health Sciences Centre, Toronto, Toronto, Canada
| | - Michael L. Oelze
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801 USA
- Beckman Institute, University of Illinois at Urbana-Champaign, Urbana, IL 61801 USA
- Carle Illinois College of Medicine, University of Illinois at Urbana-Champaign, Urbana, IL 61801 USA
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Zhao Y, Czarnota GJ, Park TH, Miller RJ, Oelze ML. In vivo validation of an in situ calibration bead as a reference for backscatter coefficient calculation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.02.07.579320. [PMID: 38370712 PMCID: PMC10871309 DOI: 10.1101/2024.02.07.579320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/20/2024]
Abstract
Objectives The study aims to assess the capability of Quantitative Ultrasound (QUS) based on the backscatter coefficient (BSC) for classifying disease states, such as breast cancer response to neoadjuvant chemotherapy and quantifying fatty liver disease. We evaluate the effectiveness of an in situ titanium (Ti) bead as a reference target in calibrating the system and mitigating attenuation and transmission loss effects on BSC estimation. Methods Traditional BSC estimation methods require external references for calibration, which do not account for ultrasound attenuation or transmission losses through tissues. To address this issue, we use an in situ titanium (Ti) bead as a reference target, because it can be used to calibrate the system and mitigate the attenuation and transmission loss effects on estimation of the BSC. The capabilities of the in situ calibration approach were assessed by quantifying consistency of BSC estimates from rabbit mammary tumors (N = 21 ). Specifically, mammary tumors were grown in rabbits and when a tumor reached 1 cm or greater in size, a 2-mm Ti bead was implanted into the tumor as a radiological marker and a calibration source for ultrasound. Three days later, the tumors were scanned with a L-14/5 38 array transducer connected to a SonixOne scanner with and without a slab of pork belly placed on top of the tumors. The pork belly acted as an additional source of attenuation and transmission loss. QUS parameters, specifically effective scatterer diameter (ESD) and effective acoustic concentration (EAC), were calculated using calibration spectra from both an external reference phantom and the Ti bead. Results For ESD estimation, the 95% confidence interval between measurements with and without the pork belly layer was (6.0,27.4) using the in situ bead and (114, 135.1) with the external reference phantom. For EAC estimation, the 95% confidence interval were (-8.1, 0.5) for the bead and (-41.5, -32.2) for the phantom. These results indicate that the in situ bead method shows reduced bias in QUS estimates due to intervening tissue losses. Conclusions The use of an in situ Ti bead as a radiological marker not only serves its traditional role but also effectively acts as a calibration target for QUS methods. This approach accounts for attenuation and transmission losses in tissue, resulting in more accurate QUS estimates and offering a promising method for enhanced disease state classification in clinical settings.
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Affiliation(s)
- Yuning Zhao
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801
| | - Gregory J. Czarnota
- Department of Medical Biophysics and Radiation Oncology, University of Toronto, Toronto, Canada, Department of Imaging Research and Radiation Oncology, Sunnybrook Health Sciences Centre, Toronto, Toronto, Canada
| | | | - Rita J. Miller
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801
| | - Michael L. Oelze
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801
- Carle Illinois College of Medicine, University of Illinois at Urbana-Champaign, Urbana, IL 61801
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Oelze M. Quantitative Ultrasound: Experimental Implementation. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2023; 1403:29-42. [PMID: 37495913 DOI: 10.1007/978-3-031-21987-0_3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/28/2023]
Abstract
The backscatter coefficient is a fundamental property of tissues, much like the attenuation and sound speed. From the backscatter coefficient, different scatterer properties describing the underlying tissue can be used to characterize tissue state. Furthermore, because the backscatter coefficient is a fundamental property of a tissue, estimation of the backscatter coefficient should be able to be computed with system and operator independence. To accomplish system- and operator-independent estimates of the backscatter coefficient, a calibration spectrum must be obtained at the same system settings as the settings used to scan a tissue. In this chapter, we discuss three approaches to obtaining a calibration spectrum and compare the engineering tradeoffs associated with each approach. In addition, methods for reducing deterministic noise in the backscatter coefficient spectrum are considered and implementation of these techniques is discussed.
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Affiliation(s)
- Michael Oelze
- Department of Electrical and Computer Engineering and Carle Illinois College of Medicine, University of Illinois at Urbana-Champaign, Champaign, IL, USA.
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Coila A, Oelze ML. Ultrasonic backscatter coefficient estimation in nonlinear regime using an in situ calibration target. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2022; 151:4196. [PMID: 35778186 PMCID: PMC9239729 DOI: 10.1121/10.0011743] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Revised: 04/29/2022] [Accepted: 06/01/2022] [Indexed: 06/03/2023]
Abstract
Tissue characterization based on the backscatter coefficient (BSC) can be degraded by acoustic nonlinearity. Often, this degradation is due to the method used for obtaining a reference spectrum, i.e., using a planar reference in water compared to a reference phantom approach resulted in more degradation. We hypothesize that an in situ calibration approach can improve BSC estimates in the nonlinear regime compared to using the reference phantom approach. The in situ calibration target provides a reference within the medium being interrogated and, therefore, nonlinear effects would already be contained in the in situ reference signal. Simulations and experiments in phantoms and in vivo were performed. A 2 mm diameter titanium bead was embedded in the interrogated media. An L9-4/38 probe (BK Ultrasound, Peabody, MA) and an analysis bandwidth from 4.5 to 7.4 MHz were used in experiments. Radiofrequency data from the sample, bead, and reference phantoms were acquired at a quasi-linear baseline power level and at further increments of output power. Better agreement between the BSC obtained at low power compared to high power was observed for the in situ calibration compared to the reference phantom approach.
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Affiliation(s)
- Andres Coila
- Beckman Institute for Advanced Science and Technology, Department of Electrical and Computer Engineering, University of Illinois Urbana-Champaign, Urbana, Illinois 61801, USA
| | - Michael L Oelze
- Beckman Institute for Advanced Science and Technology, Department of Electrical and Computer Engineering, University of Illinois Urbana-Champaign, Urbana, Illinois 61801, USA
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Cario J, Coila A, Zhao Y, Miller RJ, L Oelze M. Identifying and overcoming limitations with in situ calibration beads for quantitative ultrasound. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2022; 151:2701. [PMID: 35461481 PMCID: PMC9023090 DOI: 10.1121/10.0010286] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Revised: 03/31/2022] [Accepted: 04/04/2022] [Indexed: 06/14/2023]
Abstract
Ensuring the consistency of spectral-based quantitative ultrasound estimates in vivo necessitates accounting for diffraction, system effects, and propagation losses encountered in the tissue. Accounting for diffraction and system effects is typically achieved through planar reflector or reference phantom methods; however, neither of these is able to account for the tissue losses present in vivo between the ultrasound probe and the region of interest. In previous work, the feasibility of small titanium beads as in situ calibration targets (0.5-2 mm in diameter) was investigated. In this study, the importance of bead size for the calibration signal, the role of multiple echoes coming from the calibration bead, and sampling of the bead signal laterally through beam translation were examined. This work demonstrates that although the titanium beads naturally produce multiple reverberant echoes, time-windowing of the first echo provides the smoothest calibration spectrum for backscatter coefficient calculation. When translating the beam across the bead, the amplitude of the echo decreases rapidly as the beam moves across and past the bead. Therefore, to obtain consistent calibration signals from the bead, lateral interpolation is needed to approximate signals coming from the center of the bead with respect to the beam.
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Affiliation(s)
- Jenna Cario
- Department of Electrical and Computer Engineering, Beckman Institute for Advanced Science and Technology, Univerity of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
| | - Andres Coila
- Department of Electrical and Computer Engineering, Beckman Institute for Advanced Science and Technology, Univerity of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
| | - Yuning Zhao
- Department of Electrical and Computer Engineering, Beckman Institute for Advanced Science and Technology, Univerity of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
| | - Rita J Miller
- Department of Electrical and Computer Engineering, Beckman Institute for Advanced Science and Technology, Univerity of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
| | - Michael L Oelze
- Department of Electrical and Computer Engineering, Beckman Institute for Advanced Science and Technology, Univerity of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
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