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For: Jasper RJ, McDonald TK, Singh P, Lu M, Rougeux C, Lind BM, Yeaman S. Evaluating the accuracy of variant calling methods using the frequency of parent-offspring genotype mismatch. Mol Ecol Resour 2022;22:2524-2533. [PMID: 35510784 PMCID: PMC9544674 DOI: 10.1111/1755-0998.13628] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Revised: 03/11/2022] [Accepted: 03/29/2022] [Indexed: 11/28/2022]
Number Cited by Other Article(s)
1
Wei Y, Li X, Zhu Q, Shan T, Wang H, Dai X, Wang Y, Zhang J. Are microhaplotypes derived from the 1000 Genomes Project reliable for forensic purposes? Forensic Sci Int Genet 2025;78:103273. [PMID: 40106853 DOI: 10.1016/j.fsigen.2025.103273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2024] [Revised: 02/25/2025] [Accepted: 03/12/2025] [Indexed: 03/22/2025]
2
Mee JA, Ly C, Pigott GC. Same trait, different genes: pelvic spine loss in three brook stickleback populations in Alberta, Canada. Evol Lett 2025;9:115-124. [PMID: 39906589 PMCID: PMC11790222 DOI: 10.1093/evlett/qrae053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Revised: 09/07/2024] [Accepted: 09/23/2024] [Indexed: 02/06/2025]  Open
3
Nocchi G, Whiting JR, Yeaman S. Repeated global adaptation across plant species. Proc Natl Acad Sci U S A 2024;121:e2406832121. [PMID: 39705310 DOI: 10.1073/pnas.2406832121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2024] [Accepted: 11/09/2024] [Indexed: 12/22/2024]  Open
4
Liu Q, Song Q, Yu Y, Shi Y, Lu M, Chen Y, Tan L. Whole chloroplast genome sequence and phylogenetic analysis of Calanthe discolor (Orchidaceae). Mitochondrial DNA B Resour 2024;9:1345-1349. [PMID: 39377034 PMCID: PMC11457340 DOI: 10.1080/23802359.2024.2411376] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Accepted: 09/24/2024] [Indexed: 10/09/2024]  Open
5
Whiting JR, Booker TR, Rougeux C, Lind BM, Singh P, Lu M, Huang K, Whitlock MC, Aitken SN, Andrew RL, Borevitz JO, Bruhl JJ, Collins TL, Fischer MC, Hodgins KA, Holliday JA, Ingvarsson PK, Janes JK, Khandaker M, Koenig D, Kreiner JM, Kremer A, Lascoux M, Leroy T, Milesi P, Murray KD, Pyhäjärvi T, Rellstab C, Rieseberg LH, Roux F, Stinchcombe JR, Telford IRH, Todesco M, Tyrmi JS, Wang B, Weigel D, Willi Y, Wright SI, Zhou L, Yeaman S. The genetic architecture of repeated local adaptation to climate in distantly related plants. Nat Ecol Evol 2024;8:1933-1947. [PMID: 39187610 PMCID: PMC11461274 DOI: 10.1038/s41559-024-02514-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Accepted: 07/22/2024] [Indexed: 08/28/2024]
6
Kotlarz K, Mielczarek M, Biecek P, Guldbrandtsen B, Szyda J. Exploring the impact of sequence context on errors in SNP genotype calling with whole genome sequencing data using AI-based autoencoder approach. NAR Genom Bioinform 2024;6:lqae131. [PMID: 39318508 PMCID: PMC11420682 DOI: 10.1093/nargab/lqae131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2024] [Revised: 08/23/2024] [Accepted: 09/06/2024] [Indexed: 09/26/2024]  Open
7
Jambulingam D, Rathinakannan VS, Heron S, Schleutker J, Fey V. Kuura-An automated workflow for analyzing WES and WGS data. PLoS One 2024;19:e0296785. [PMID: 38236904 PMCID: PMC10796025 DOI: 10.1371/journal.pone.0296785] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Accepted: 12/19/2023] [Indexed: 01/22/2024]  Open
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