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Leow CJ, Piller KR. Life History-Dependent Brain Transcriptomic Signatures in Nothobranchids: Insights into Aging, Neurogenesis, and Life History Evolution. Integr Org Biol 2025; 7:obaf016. [PMID: 40271120 PMCID: PMC12015474 DOI: 10.1093/iob/obaf016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2025] [Revised: 04/08/2025] [Accepted: 04/15/2025] [Indexed: 04/25/2025] Open
Abstract
The African turquoise killifish Nothobranchius furzeri is a powerful model organism in aging research. Within the family Nothobranchiidae, a wide range of lifespan is observed in annual, semi-annual, and non-annual life histories. In this study, we examined the brain transcriptomic signatures of adult nothobranchids across life history variations. Our results show that the brain gene expression profiles exhibit strong life history signatures compared to the liver tissue. Semi-annual Fundulopanchax species shows upregulation in cell division and mitosis compared to non-annual Aphyosemion species. We identified genes related to neurogenesis such as DNMT3A, SOX2, and FGF10 that show downregulation in the short-lived annual species compared to other life histories. The Notch signaling pathway is enriched in the non-annual species suggesting the importance of this pathway in longer-lived killifish. Our study demonstrates that other non-model nothobranchids can be used as comparative species to N . furzeri in the study of aging, neurogenesis, and life history.
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Affiliation(s)
- C J Leow
- Department of Biological Sciences, Southeastern Louisiana University, Hammond, LA 70402, USA
| | - K R Piller
- Department of Biological Sciences, Southeastern Louisiana University, Hammond, LA 70402, USA
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2
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Frankenhuis WE, Gopnik A. Early adversity and the development of explore-exploit tradeoffs. Trends Cogn Sci 2023:S1364-6613(23)00091-8. [PMID: 37142526 DOI: 10.1016/j.tics.2023.04.001] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2023] [Revised: 03/28/2023] [Accepted: 04/05/2023] [Indexed: 05/06/2023]
Abstract
Childhood adversity can have wide-ranging and long-lasting effects on later life. But what are the mechanisms that are responsible for these effects? This article brings together the cognitive science literature on explore-exploit tradeoffs, the empirical literature on early adversity, and the literature in evolutionary biology on 'life history' to explain how early experience influences later life. We propose one potential mechanism: early experiences influence 'hyperparameters' that determine the balance between exploration and exploitation. Adversity might accelerate a shift from exploration to exploitation, with broad and enduring effects on the adult brain and mind. These effects may be produced by life-history adaptations that use early experience to tailor development and learning to the likely future states of an organism and its environment.
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Affiliation(s)
- Willem E Frankenhuis
- Department of Psychology, Utrecht University, Utrecht, The Netherlands; Max Planck Institute for the Study of Crime, Security and Law, Freiburg, Germany.
| | - Alison Gopnik
- Department of Psychology and Berkeley Artificial Intelligence Research, University of California at Berkeley, CA, USA
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3
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Mahamat M, De León LF, Martínez ML. Exploring potential drivers of brain size variation in the electric fish Brachyhypopomus occidentalis. ZOOLOGY 2023; 156:126058. [PMID: 36459729 DOI: 10.1016/j.zool.2022.126058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Revised: 11/03/2022] [Accepted: 11/17/2022] [Indexed: 11/23/2022]
Abstract
Characterizing the factors that shape variation in brain size in natural populations is crucial to understanding the evolution of brain size in animals. Here, we explore how relative brain size and brain allometry vary with drainage, predation risk and sex in natural populations of the electric knifefish Brachyhypopomus occidentalis. Fish were sampled from high and low predation risk sites within two independent river drainages in eastern and central Panamá. Overall, we observed low variation in brain-body size allometric slopes associated with drainage, predation risk and sex category. However, we observed significant differences in allometric intercepts between predation risk sites. We also found significant differences in relative brain mass associated with drainage, as well as significant differences in absolute brain mass associated with drainage, predation risk and sex category. Our results suggest potential constraints in brain-body allometry across populations of B. occidentalis. However, both drainage and predation risk may be playing a role in brain mass variation among populations. We suggest that variation in brain mass in electric fishes is affected by multiple extrinsic and intrinsic factors, including geography, environmental complexity, social interaction and developmental or functional constraints.
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Affiliation(s)
- Marangaby Mahamat
- School of Natural Sciences, Laurentian University, Sudbury, Ontario, Canada
| | - Luis F De León
- Department of Biology, University of Massachusetts Boston, Boston, MA, USA; Centro de Biodiversidad y Descubrimiento de Drogas, Instituto de Investigaciones Científicas y Servicios de Alta Tecnología (INDICASAT AIP), P.O. Box 0843-01103 Panamá, Republica of Panama
| | - Mery L Martínez
- School of Natural Sciences, Laurentian University, Sudbury, Ontario, Canada.
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4
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De Meester G, Van Linden L, Torfs J, Pafilis P, Šunje E, Steenssens D, Zulčić T, Sassalos A, Van Damme R. Learning with lacertids: Studying the link between ecology and cognition within a comparative framework. Evolution 2022; 76:2531-2552. [PMID: 36111365 DOI: 10.1111/evo.14618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2022] [Revised: 08/10/2022] [Accepted: 08/21/2022] [Indexed: 01/22/2023]
Abstract
Cognition is an essential tool for animals to deal with environmental challenges. Nonetheless, the ecological forces driving the evolution of cognition throughout the animal kingdom remain enigmatic. Large-scale comparative studies on multiple species and cognitive traits have been advanced as the best way to facilitate our understanding of cognitive evolution, but such studies are rare. Here, we tested 13 species of lacertid lizards (Reptilia: Lacertidae) using a battery of cognitive tests measuring inhibitory control, problem-solving, and spatial and reversal learning. Next, we tested the relationship between species' performance and (a) resource availability (temperature and precipitation), habitat complexity (Normalized Difference Vegetation Index), and habitat variability (seasonality) in their natural habitat and (b) their life history (size at hatching and maturity, clutch size, and frequency). Although species differed markedly in their cognitive abilities, such variation was mostly unrelated to their ecology and life history. Yet, species living in more variable environments exhibited lower behavioral flexibility, likely due to energetic constrains in such habitats. Our standardized protocols provide opportunities for collaborative research, allowing increased sample sizes and replication, essential for moving forward in the field of comparative cognition. Follow-up studies could include more detailed measures of habitat structure and look at other potential selective drivers such as predation.
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Affiliation(s)
- Gilles De Meester
- Functional Morphology Lab, Department of Biology, University of Antwerp, Wilrijk, 2610, Belgium.,Section of Zoology and Marine Biology, Department of Biology, National and Kapodistrian University of Athens, Athens, 157 84, Greece
| | - Lisa Van Linden
- Functional Morphology Lab, Department of Biology, University of Antwerp, Wilrijk, 2610, Belgium
| | - Jonas Torfs
- Functional Morphology Lab, Department of Biology, University of Antwerp, Wilrijk, 2610, Belgium
| | - Panayiotis Pafilis
- Section of Zoology and Marine Biology, Department of Biology, National and Kapodistrian University of Athens, Athens, 157 84, Greece
| | - Emina Šunje
- Functional Morphology Lab, Department of Biology, University of Antwerp, Wilrijk, 2610, Belgium.,Department of Biology, Faculty of Natural Sciences, University of Sarajevo, Sarajevo, 71000, Bosnia and Herzegovina.,Herpetological Association in Bosnia and Herzegovina: BHHU: ATRA, Sarajevo, 71000, Bosnia and Herzegovina
| | - Dries Steenssens
- Functional Morphology Lab, Department of Biology, University of Antwerp, Wilrijk, 2610, Belgium
| | - Tea Zulčić
- Herpetological Association in Bosnia and Herzegovina: BHHU: ATRA, Sarajevo, 71000, Bosnia and Herzegovina
| | - Athanasios Sassalos
- Section of Zoology and Marine Biology, Department of Biology, National and Kapodistrian University of Athens, Athens, 157 84, Greece
| | - Raoul Van Damme
- Functional Morphology Lab, Department of Biology, University of Antwerp, Wilrijk, 2610, Belgium
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5
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Yang YJ, Jiang Y, Mi ZP, Liao WB. Testing the Role of Environmental Harshness and Sexual Selection in Limb Muscle Mass in Anurans. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.879885] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Sexual dimorphism is regarded as the consequence of differential responses by males and females to selection pressures. Limb muscle plays a very important role during amplexus, which is likely to be under both natural and sexual selection in anurans. Here, we studied the effects of natural and sexual selection on limb muscle mass in males and females across 64 species of anurans. The results showed that there were non-significant differences in relative limb muscle mass between the sexes among species, exhibiting no sexual dimorphism in limb muscle. Absolute and relative limb muscle mass positively displayed correlations with snout-vent length (SVL)for both sexes. However, neither male-biased operational sex ratio (OSR) nor environmental harshness [e.g., coefficient of variation (CV) in temperature and CV in rainfall] can explain relative limb muscle mass (e.g., forelimb, hindlimb, and total limb muscle) within each sex. The findings suggest that environmental harshness and sexual selection cannot play important roles in promoting variations in limb muscle among anuran species.
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Fischer S, Jungwirth A. The costs and benefits of larger brains in fishes. J Evol Biol 2022; 35:973-985. [PMID: 35612352 DOI: 10.1111/jeb.14026] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Revised: 04/07/2022] [Accepted: 05/06/2022] [Indexed: 12/01/2022]
Abstract
The astonishing diversity of brain sizes observed across the animal kingdom is typically explained in the context of trade-offs: the benefits of a larger brain, such as enhanced cognitive ability, are balanced against potential costs, such as increased energetic demands. Several hypotheses have been formulated in this framework, placing different emphasis on ecological, behavioural, or physiological aspects of trade-offs in brain size evolution. Within this body of work, there exists considerable taxonomic bias towards studies of birds and mammals, leaving some uncertainty about the generality of the respective arguments. Here, we test three of the most prominent such hypotheses, the 'expensive tissue', 'social brain' and 'cognitive buffer' hypotheses, in a large dataset of fishes, derived from a publicly available resource (FishBase). In accordance with predictions from the 'expensive tissue' and the 'social brain' hypothesis, larger brains co-occur with reduced fecundity and increased sociality in at least some Classes of fish. Contrary to expectations, however, lifespan is reduced in large-brained fishes, and there is a tendency for species that perform parental care to have smaller brains. As such, it appears that some potential costs (reduced fecundity) and benefits (increased sociality) of large brains are near universal to vertebrates, whereas others have more lineage-specific effects. We discuss our findings in the context of fundamental differences between the classically studied birds and mammals and the fishes we analyse here, namely divergent patterns of growth, parenting and neurogenesis. As such, our work highlights the need for a taxonomically diverse approach to any fundamental question in evolutionary biology.
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Affiliation(s)
- Stefan Fischer
- Department of Interdisciplinary Life Sciences, Konrad Lorenz Institute of Ethology, University of Veterinary Medicine Vienna, Vienna, Austria.,Department of Behavioural and Cognitive Biology, University of Vienna, Vienna, Austria
| | - Arne Jungwirth
- Department of Interdisciplinary Life Sciences, Konrad Lorenz Institute of Ethology, University of Veterinary Medicine Vienna, Vienna, Austria
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7
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Glazier DS. Complications with body-size correction in comparative biology: possible solutions and an appeal for new approaches. J Exp Biol 2022; 225:274353. [PMID: 35258614 DOI: 10.1242/jeb.243313] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The magnitude of many kinds of biological traits relates strongly to body size. Therefore, a first step in comparative studies frequently involves correcting for effects of body size on the variation of a phenotypic trait, so that the effects of other biological and ecological factors can be clearly distinguished. However, commonly used traditional methods for making these body-size adjustments ignore or do not completely separate the causal interactive effects of body size and other factors on trait variation. Various intrinsic and extrinsic factors may affect not only the variation of a trait, but also its covariation with body size, thus making it difficult to remove completely the effect of body size in comparative studies. These complications are illustrated by several examples of how body size interacts with diverse developmental, physiological, behavioral and ecological factors to affect variation in metabolic rate both within and across species. Such causal interactions are revealed by significant effects of these factors on the body-mass scaling slope of metabolic rate. I discuss five possible major kinds of methods for removing body-size effects that attempt to overcome these complications, at least in part, but I hope that my Review will encourage the development of other, hopefully better methods for doing so.
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Affiliation(s)
- Douglas S Glazier
- Department of Biology, Juniata College, 1700 Moore Street, Huntingdon, PA 16652, USA
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8
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Walasek N, Frankenhuis WE, Panchanathan K. Sensitive periods, but not critical periods, evolve in a fluctuating environment: a model of incremental development. Proc Biol Sci 2022; 289:20212623. [PMID: 35168396 PMCID: PMC8848242 DOI: 10.1098/rspb.2021.2623] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Sensitive periods, during which the impact of experience on phenotype is larger than in other periods, exist in all classes of organisms, yet little is known about their evolution. Recent mathematical modelling has explored the conditions in which natural selection favours sensitive periods. These models have assumed that the environment is stable across ontogeny or that organisms can develop phenotypes instantaneously at any age. Neither assumption generally holds. Here, we present a model in which organisms gradually tailor their phenotypes to an environment that fluctuates across ontogeny, while receiving cost-free, imperfect cues to the current environmental state. We vary the rate of environmental change, the reliability of cues and the duration of adulthood relative to ontogeny. We use stochastic dynamic programming to compute optimal policies. From these policies, we simulate levels of plasticity across ontogeny and obtain mature phenotypes. Our results show that sensitive periods can occur at the onset, midway through and even towards the end of ontogeny. In contrast with models assuming stable environments, organisms always retain residual plasticity late in ontogeny. We conclude that critical periods, after which plasticity is zero, are unlikely to be favoured in environments that fluctuate across ontogeny.
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Affiliation(s)
- Nicole Walasek
- Behavioral Science Institute, Radboud University, 6525 GD Nijmegen, The Netherlands
| | - Willem E Frankenhuis
- Behavioral Science Institute, Radboud University, 6525 GD Nijmegen, The Netherlands.,Department of Psychology, Utrecht University, 3584 CS Utrecht, The Netherlands.,Max Planck Institute for the Study of Crime, Security and Law, 79100 Freiburg, Germany
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9
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10
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Sowersby W, Eckerström-Liedholm S, Rowiński PK, Balogh J, Eiler S, Upstone JD, Gonzalez-Voyer A, Rogell B. The relative effects of pace of life-history and habitat characteristics on the evolution of sexual ornaments: A comparative assessment. Evolution 2021; 76:114-127. [PMID: 34545942 DOI: 10.1111/evo.14358] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 08/17/2021] [Accepted: 08/27/2021] [Indexed: 12/14/2022]
Abstract
Selection may favor greater investment into sexual ornaments when opportunities for future reproduction are limited, for example, under high adult mortality. However, predation, a key driver of mortality, typically selects against elaborate sexual ornaments. Here, we examine the evolution of sexual ornaments in killifishes, which have marked contrasts in life-history strategy among species and inhabit environments that differ in accessibility to aquatic predators. We first assessed if the size of sexual ornaments (unpaired fins) influenced swimming performance. Second, we investigated whether the evolution of larger ornamental fins is driven primarily by the pace of life-history (investment into current vs. future reproduction) or habitat type (a proxy for predation risk). We found that larger fins negatively affected swimming performance. Further, males from species inhabiting ephemeral habitats, with lower predation risk, had larger fins and greater sexual dimorphism in fin size, compared to males from more accessible permanent habitats. We show that enlarged ornamental fins, which impair locomotion, evolve more frequently in environments that are less accessible to predators, without clear associations to life-history strategy. Our results provide a rare link between the evolution of sexual ornaments, effects on locomotion performance, and natural selection on ornament size potentially through habitat differences in predation risk.
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Affiliation(s)
- Will Sowersby
- Department of Zoology, Stockholm University, Stockholm, SE-11418, Sweden.,Department of Biology and Geosciences, Graduate School of Science, Osaka City University, Osaka, 558-8585, Japan
| | - Simon Eckerström-Liedholm
- Department of Zoology, Stockholm University, Stockholm, SE-11418, Sweden.,Wild Animal Initiative, Washington, D.C., 20010
| | - Piotr K Rowiński
- Department of Zoology, Stockholm University, Stockholm, SE-11418, Sweden
| | - Julia Balogh
- Department of Zoology, Stockholm University, Stockholm, SE-11418, Sweden
| | - Stefan Eiler
- Department of Zoology, Stockholm University, Stockholm, SE-11418, Sweden
| | - Joseph D Upstone
- Department of Zoology, Stockholm University, Stockholm, SE-11418, Sweden
| | - Alejandro Gonzalez-Voyer
- Department of Zoology, Stockholm University, Stockholm, SE-11418, Sweden.,Instituto de Ecología, Universidad Nacional Autónoma de México, México City, 04510, Mexico
| | - Björn Rogell
- Department of Zoology, Stockholm University, Stockholm, SE-11418, Sweden.,Department of Aquatic Resources, Institute of Freshwater Research, Swedish University of Agricultural Sciences, Drottningholm, SE-17893, Sweden
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