1
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Radiationless deactivation pathways versus H-atom elimination from the N-H bond photodissociation in PhNH 2-(Py) n (n = 1,2) complexes. PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES : OFFICIAL JOURNAL OF THE EUROPEAN PHOTOCHEMISTRY ASSOCIATION AND THE EUROPEAN SOCIETY FOR PHOTOBIOLOGY 2023; 22:33-45. [PMID: 36071272 DOI: 10.1007/s43630-022-00295-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Accepted: 08/19/2022] [Indexed: 01/12/2023]
Abstract
Minimum energy structures of the ground and lowest excited states of aniline (PhNH2) solvated by pyridine (Py) show that the clusters formed are stabilized by hydrogen bonds in which only one or both hydrogen atoms of the NH2 group take part. Two different N-H bonds photodissociation in PhNH2-(Py)n (n = 1,2) complexes, free and hydrogen bonded have been studied by analyzing excited state potential energy surfaces. In the first one, only N-H bonds engaged in hydrogen bonding in these complexes are considered. RICC2 calculations of potential energy (PE) profiles indicate that all photochemical reaction paths along N-H stretching occur mainly via the proton-coupled electron transfer (PCET) mechanism. The repulsive charge transfer 1ππ*(CT) state dominates the PE profiles, leading to low-lying 1ππ*(CT)/S0 conical intersections and thus provide channels for ultrafast radiationless deactivation of the electronic excitation or stabilization to biradical complexes. The second photoreaction consists of a direct dissociation along the free N-H bond of the NH2 group. It has been shown that this process is played by excited singlet states of 1πσ* character having repulsive potential energy profiles with respect to the stretching of N-H bond, which dissociates over an exit barrier about 0.5 eV giving rise to the formation of a 1πσ*/S0 conical intersection. This may cause an internal conversion to the ground state or may lead to H-atom elimination. This photophysical process is the same in both planar and T-shaped conformers of the PhNH2-Py monomer complex. Our findings reveal that there is no single dominating path in the photodissociation of N-H bonds in PhNH2-(Py)n complexes, but rather a variety of paths involving H-atom elimination and several quenching mechanisms.
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2
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Webster RD. Electrochemical and Spectroscopic Characterization of Oxidized Intermediate Forms of Vitamin E. Molecules 2022; 27:6194. [PMID: 36234726 PMCID: PMC9571374 DOI: 10.3390/molecules27196194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2022] [Revised: 09/12/2022] [Accepted: 09/15/2022] [Indexed: 11/16/2022] Open
Abstract
Vitamin E, a collection of lipophilic phenolic compounds based on chroman-6-ol, has a rich and fascinating oxidative chemistry involving a range of intermediate forms, some of which are proposed to be important in its biological functions. In this review, the available electrochemical and spectroscopic data on these oxidized intermediates are summarized, along with a discussion on how their lifetimes and chemical stability are either typical of similar phenolic and chroman-6-ol derived compounds, or atypical and unique to the specific oxidized isomeric form of vitamin E. The overall electrochemical oxidation mechanism for vitamin E can be summarized as involving the loss of two-electrons and one-proton, although the electron transfer and chemical steps can be controlled to progress along different pathways to prolong the lifetimes of discreet intermediates by modifying the experimental conditions (applied electrochemical potential, aqueous or non-aqueous solvent, and pH). Depending on the environment, the electrochemical reactions can involve single electron transfer (SET), proton-coupled electron transfer (PCET), as well as homogeneous disproportionation and comproportionation steps. The intermediate species produced via chemical or electrochemical oxidation include phenolates, phenol cation radicals, phenoxyl neutral radicals, dications, diamagnetic cations (phenoxeniums) and para-quinone methides. The cation radicals of all the tocopherols are atypically long-lived compared to the cation radicals of other phenols, due to their relatively weak acidity. The diamagnetic cation derived from α-tocopherol is exceptionally long-lived compared to the diamagnetic cations from the other β-, γ- and δ-isomers of vitamin E and compared with other phenoxenium cations derived from phenolic compounds. In contrast, the lifetime of the phenoxyl radical derived from α-tocopherol, which is considered to be critical in biological reactions, is typical for what is expected for a compound with its structural features. Over longer times via hydrolysis reactions, hydroxy para-quinone hemiketals and quinones can be formed from the oxidized intermediates, which can themselves undergo reduction processes to form intermediate anion radicals and dianions. Methods for generating the oxidized intermediates by chemical, photochemical and electrochemical methods are discussed, along with a summary of how the final products vary depending on the method used for oxidation. Since the intermediates mainly only survive in solution, they are most often monitored using UV-vis spectroscopy, FTIR or Raman spectroscopies, and EPR spectroscopy, with the spectroscopic techniques sometimes combined with fast photoinitiated excitation and time-resolved spectroscopy for detection of short-lived species.
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Affiliation(s)
- Richard D. Webster
- School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore;
- Environmental Chemistry and Materials Centre, Nanyang Environment & Water Research Institute (NEWRI), Nanyang Technological University, 1 Cleantech Loop, Clean Tech One, Singapore 637141, Singapore
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3
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Bin Mohd Yusof MS, Song H, Debnath T, Lowe B, Yang M, Loh ZH. Ultrafast proton transfer of the aqueous phenol radical cation. Phys Chem Chem Phys 2022; 24:12236-12248. [PMID: 35579397 DOI: 10.1039/d2cp00505k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Proton transfer (PT) reactions are fundamental to numerous chemical and biological processes. While sub-picosecond PT involving electronically excited states has been extensively studied, little is known about ultrafast PT triggered by photoionization. Here, we employ femtosecond optical pump-probe spectroscopy and quantum dynamics calculations to investigate the ultrafast proton transfer dynamics of the aqueous phenol radical cation (PhOH˙+). Analysis of the vibrational wave packet dynamics reveals unusually short dephasing times of 0.18 ± 0.02 ps and 0.16 ± 0.02 ps for the PhOH˙+ O-H wag and bend frequencies, respectively, suggestive of ultrafast PT occurring on the ∼0.1 ps timescale. The reduced potential energy surface obtained from ab initio calculations shows that PT is barrierless when it is coupled to the intermolecular hindered translation between PhOH˙+ and the proton-acceptor water molecule. Quantum dynamics calculations yield a lifetime of 193 fs for PhOH˙+, in good agreement with the experimental results and consistent with the PT reaction being mediated by the intermolecular O⋯O stretch. These results suggest that photoionization can be harnessed to produce photoacids that undergo ultrafast PT. In addition, they also show that PT can serve as an ultrafast deactivation channel for limiting the oxidative damage potential of radical cations.
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Affiliation(s)
- Muhammad Shafiq Bin Mohd Yusof
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore.
| | - Hongwei Song
- State Key Laboratory for Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China
| | - Tushar Debnath
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore.
| | - Bethany Lowe
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore.
| | - Minghui Yang
- State Key Laboratory for Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.,Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan 430071, China
| | - Zhi-Heng Loh
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore.
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4
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Brown SE, Shakib FA. Recent progress in approximate quantum dynamics methods for the study of proton-coupled electron transfer reactions. Phys Chem Chem Phys 2021; 23:2535-2556. [PMID: 33367437 DOI: 10.1039/d0cp05166g] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Proton-coupled electron transfer (PCET) reactions are ubiquitous natural processes at the heart of energy conversion reactions in photosynthesis and respiration, DNA repair, and diverse enzymatic reactions. Theoretical formulation and computational method developments have eyed modeling of thermal and photoinduced PCET for the last three decades. The accumulation of these studies, collected in dozens of reviews, accounts, and perspectives, has firmly established the influence of quantum effects, including non-adiabatic electronic transitions, vibrational relaxation, zero-point energy, and proton tunneling, on the rate and mechanism of PCET reactions. Here, we focus on some recently-developed methods, spanning the last eight years, that can quantitatively capture these effects in the PCET context and provide efficient means for their qualitative description in complex systems. The theoretical background of each method and their accuracy with respect to exact results are discussed and the results of relevant PCET simulations based on each method are presented.
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Affiliation(s)
- Sandra E Brown
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA 90095, USA
| | - Farnaz A Shakib
- Department of Chemistry and Environmental Science, New Jersey Institute of Technology, Newark, NJ 07102, USA.
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5
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Berg N, Bergwinkl S, Nuernberger P, Horinek D, Gschwind RM. Extended Hydrogen Bond Networks for Effective Proton-Coupled Electron Transfer (PCET) Reactions: The Unexpected Role of Thiophenol and Its Acidic Channel in Photocatalytic Hydroamidations. J Am Chem Soc 2021; 143:724-735. [DOI: 10.1021/jacs.0c08673] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Nele Berg
- Institute of Organic Chemistry, University of Regensburg, D-93053 Regensburg, Germany
| | - Sebastian Bergwinkl
- Institute of Physical and Theoretical Chemistry, University of Regensburg, D-93053 Regensburg, Germany
| | - Patrick Nuernberger
- Institute of Physical and Theoretical Chemistry, University of Regensburg, D-93053 Regensburg, Germany
| | - Dominik Horinek
- Institute of Physical and Theoretical Chemistry, University of Regensburg, D-93053 Regensburg, Germany
| | - Ruth M. Gschwind
- Institute of Organic Chemistry, University of Regensburg, D-93053 Regensburg, Germany
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6
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Benazzi E, Karlsson J, Ben M'Barek Y, Chabera P, Blanchard S, Alves S, Proust A, Pullerits T, Izzet G, Gibson EA. Acid-triggering of light-induced charge-separation in hybrid organic/inorganic molecular photoactive dyads for harnessing solar energy. Inorg Chem Front 2021. [DOI: 10.1039/d0qi01368d] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
H+ modulated charge-transfer in photoexcited covalently linked W and Mo Keggin-bodipy conjugates is demonstrated using transient absorption spectroscopy and photoluminescence. Adding acid switches on (W) or accelerates (Mo) charge separation.
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7
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Zhou Z, Kong X, Liu T. Applications of Proton-Coupled Electron Transfer in Organic Synthesis. CHINESE J ORG CHEM 2021. [DOI: 10.6023/cjoc202106001] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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8
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Deneva V, Bakardzhiyski I, Bambalov K, Antonova D, Tsobanova D, Bambalov V, Cozzolino D, Antonov L. Using Raman Spectroscopy as a Fast Tool to Classify and Analyze Bulgarian Wines-A Feasibility Study. Molecules 2019; 25:molecules25010170. [PMID: 31906182 PMCID: PMC6982931 DOI: 10.3390/molecules25010170] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2019] [Revised: 12/28/2019] [Accepted: 12/29/2019] [Indexed: 11/16/2022] Open
Abstract
Raman spectroscopy, being able to provide rich information about the chemical composition of the sample, is gaining an increasing interest in the applications of food. Raman spectroscopy was used to analyze a set of wine samples (red and white) sourced from rarely studied traditional Bulgarian wines. One of the objectives of this study was to attempt the fast classification of Bulgarian wines according to variety and geographic origin. In addition, calibration models between phenolic compounds and Raman spectroscopy were developed using partial least squares (PLS) regression using cross-validation. Good calibration statistics were obtained for total phenolic compounds (by the Folin–Ciocalteu method) and total phenolic compounds and phenolic acids (spectrophotometrically at 280 nm) where the coefficient of determination (R2) and the standard error in the cross-validation (SECV) were 0.81 (474.2 mg/dm3 gallic acid), 0.87 (526.6 mg/dm3 catechin equivalents), and 0.81 (44.8 mg/dm3 caffeic equivalents), respectively. This study has demonstrated that Raman spectroscopy can be suitable for measuring phenolic compounds in both red and white wines.
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Affiliation(s)
- Vera Deneva
- Institute of Organic Chemistry with Centre of Phytochemistry, Bulgarian Academy of Sciences, Acad. G. Bonchev str., bldg. 9, 1113 Sofia, Bulgaria; (V.D.); (D.A.); (L.A.)
| | - Ivan Bakardzhiyski
- Department of Technology of Wine and Beer, University of Food Technologies Plovdiv, 26 Maritza blvd., 4002 Plovdiv, Bulgaria; (I.B.); (K.B.); (D.T.)
| | - Krasimir Bambalov
- Department of Technology of Wine and Beer, University of Food Technologies Plovdiv, 26 Maritza blvd., 4002 Plovdiv, Bulgaria; (I.B.); (K.B.); (D.T.)
| | - Daniela Antonova
- Institute of Organic Chemistry with Centre of Phytochemistry, Bulgarian Academy of Sciences, Acad. G. Bonchev str., bldg. 9, 1113 Sofia, Bulgaria; (V.D.); (D.A.); (L.A.)
| | - Diana Tsobanova
- Department of Technology of Wine and Beer, University of Food Technologies Plovdiv, 26 Maritza blvd., 4002 Plovdiv, Bulgaria; (I.B.); (K.B.); (D.T.)
| | - Valentin Bambalov
- Department of Viticulture, Agricultural University Plovdiv, 12 Mendeleev blvd., 4000 Plovdiv, Bulgaria;
| | - Daniel Cozzolino
- School of Science, RMIT University, GPO Box 2476, Melbourne, VIC 3001, Australia
- Correspondence: ; Tel.: +61-3-99259634
| | - Liudmil Antonov
- Institute of Organic Chemistry with Centre of Phytochemistry, Bulgarian Academy of Sciences, Acad. G. Bonchev str., bldg. 9, 1113 Sofia, Bulgaria; (V.D.); (D.A.); (L.A.)
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9
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Biswas S, Bhattacharya I, Chakraborty T. Identification of an Emitting Metastable State of p-Fluorophenol-Ammonia 1:2 Complex by Laser-Induced Fluorescence Spectroscopy. J Phys Chem A 2019; 123:10563-10570. [PMID: 31714082 DOI: 10.1021/acs.jpca.9b07958] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We have demonstrated here, for the first time to our knowledge, the formation of an emitting metastable species upon lowest electronic excitation (S1) of a hydrogen-bonded 1:2 complex of para-fluorophenol (pFP) with ammonia (NH3), which is known to be one of the smallest reactive complexes to undergo excited state H-atom transfer (HAT) reaction to produce •NH4(NH3) radical fragment. The emission spectrum of the species is characterized to be red-shifted, broad, and structureless. From the viewpoint of energy balance, an excited state proton transfer (ESPT) is unfavorable, but according to predicted electronic structure parameters, the metastable state species could be stabilized by charge transfer (CT) interaction at the hydrogen-bonded geometry of the complex. We propose that this species could act as an intermediate to the HAT process in the excited state. The observation of such a state could be valuable to understand the complex dynamics of similar events in biologically relevant systems.
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Affiliation(s)
- Souvick Biswas
- School of Chemical Sciences , Indian Association for the Cultivation of Science , 2A Raja S C Mullick Road, Jadavpur , Kolkata 700032 , India
| | - Indrani Bhattacharya
- School of Chemical Sciences , Indian Association for the Cultivation of Science , 2A Raja S C Mullick Road, Jadavpur , Kolkata 700032 , India
| | - Tapas Chakraborty
- School of Chemical Sciences , Indian Association for the Cultivation of Science , 2A Raja S C Mullick Road, Jadavpur , Kolkata 700032 , India
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10
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Yee EF, Dzikovski B, Crane BR. Tuning Radical Relay Residues by Proton Management Rescues Protein Electron Hopping. J Am Chem Soc 2019; 141:17571-17587. [PMID: 31603693 DOI: 10.1021/jacs.9b05715] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Transient tyrosine and tryptophan radicals play key roles in the electron transfer (ET) reactions of photosystem (PS) II, ribonucleotide reductase (RNR), photolyase, and many other proteins. However, Tyr and Trp are not functionally interchangeable, and the factors controlling their reactivity are often unclear. Cytochrome c peroxidase (CcP) employs a Trp191•+ radical to oxidize reduced cytochrome c (Cc). Although a Tyr191 replacement also forms a stable radical, it does not support rapid ET from Cc. Here we probe the redox properties of CcP Y191 by non-natural amino acid substitution, altering the ET driving force and manipulating the protic environment of Y191. Higher potential fluorotyrosine residues increase ET rates marginally, but only addition of a hydrogen bond donor to Tyr191• (via Leu232His or Glu) substantially alters activity by increasing the ET rate by nearly 30-fold. ESR and ESEEM spectroscopies, crystallography, and pH-dependent ET kinetics provide strong evidence for hydrogen bond formation to Y191• by His232/Glu232. Rate measurements and rapid freeze quench ESR spectroscopy further reveal differences in radical propagation and Cc oxidation that support an increased Y191• formal potential of ∼200 mV in the presence of E232. Hence, Y191 inactivity results from a potential drop owing to Y191•+ deprotonation. Incorporation of a well-positioned base to accept and donate back a hydrogen bond upshifts the Tyr• potential into a range where it can effectively oxidize Cc. These findings have implications for the YZ/YD radicals of PS II, hole-hopping in RNR and cryptochrome, and engineering proteins for long-range ET reactions.
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Affiliation(s)
- Estella F Yee
- Department of Chemistry and Chemical Biology , Cornell University , Ithaca , New York 14853 , United States
| | - Boris Dzikovski
- Department of Chemistry and Chemical Biology , Cornell University , Ithaca , New York 14853 , United States.,National Biomedical Center for Advanced ESR Technologies (ACERT) , Cornell University , Ithaca , New York 14850 , United States
| | - Brian R Crane
- Department of Chemistry and Chemical Biology , Cornell University , Ithaca , New York 14853 , United States
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11
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Enomoto T, Kondo M, Masaoka S. Proton-Coupled Electron Transfer Induced by Near-Infrared Light. Chem Asian J 2019; 14:2806-2809. [PMID: 31290247 DOI: 10.1002/asia.201900863] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2019] [Indexed: 11/06/2022]
Abstract
A proton-coupled electron transfer reaction induced by near-infrared light (>710 nm) has been achieved using a dye that shows intense NIR absorption property and electron/proton-accepting abilities. The developed system generated long-lived radical species and showed high reversibility and robustness. Mechanistic investigations suggested that the rate-determining step of the reaction involves the proton transfer process.
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Affiliation(s)
- Takafumi Enomoto
- Department of Life and Coordination-Complex Molecular Science, Institution for Molecular Science (IMS), 5-1 Higashiyama, Myodaiji, Okazaki, Aichi, 444-8787, Japan
| | - Mio Kondo
- Department of Life and Coordination-Complex Molecular Science, Institution for Molecular Science (IMS), 5-1 Higashiyama, Myodaiji, Okazaki, Aichi, 444-8787, Japan.,Division of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan
| | - Shigeyuki Masaoka
- Department of Life and Coordination-Complex Molecular Science, Institution for Molecular Science (IMS), 5-1 Higashiyama, Myodaiji, Okazaki, Aichi, 444-8787, Japan.,Division of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan
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12
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Lymar SV, Ertem MZ, Polyansky DE. Solvent-dependent transition from concerted electron-proton to proton transfer in photoinduced reactions between phenols and polypyridine Ru complexes with proton-accepting sites. Dalton Trans 2018; 47:15917-15928. [PMID: 30375615 DOI: 10.1039/c8dt03858a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The bimolecular rate coefficients (kobsq) for quenching the metal-to-ligand charge transfer excited states of two Ru polypyridine complexes containing H-bond accepting sites by six p-substituted phenols exhibit abrupt deviations from the expected linear correlations of log kobsq with phenol's Hammett σp constant. This pattern is attributed to a transition of the quenching mechanism from a concerted electron-proton transfer (EPT) to a proton transfer (PT); the latter becomes predominant for the most acidic phenols in acetonitrile, but not in dichloromethane. This assertion is supported by a detailed thermochemical analysis, which also excludes the quenching pathways involving electron transfer from phenols with or without deprotonation of phenols to the solvent, either concerted or sequential. The transition from EPT to PT upon the σp increase is consistent/supported by the magnitudes of the measured and computed PhOH/OD kinetic isotope effects and by the observed reduction of the EPT product yields upon replacing the low σp methoxyphenol by the high σp nitrophenol. In addition to modulating the relative contribution of the EPT and PT quenching pathways, the solvent strongly affects the bimolecular rate coefficients for the EPT quenching proper. Unlike with H-atom transfer reactions, this kinetic solvent effect could not be quantitatively accounted for by the phenol-solvent H-bonding alone, which suggests a solvent effect on the H-bonding constants in the phenol-Ru complex precursor exciplexes and/or on the unimolecular EPT rate coefficients within these exciplexes.
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Affiliation(s)
- Sergei V Lymar
- Chemistry Division, Brookhaven National Laboratory, Upton, New York 11973-5000, USA.
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13
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Lefebvre C, Michelin C, Martzel T, Djou’ou Mvondo V, Bulach V, Abe M, Hoffmann N. Photochemically Induced Intramolecular Radical Cyclization Reactions with Imines. J Org Chem 2018; 83:1867-1875. [DOI: 10.1021/acs.joc.7b02810] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Corentin Lefebvre
- CNRS, Université de Reims Champagne-Ardenne, ICMR, Equipe de Photochimie, UFR Sciences, B.P. 1039, 51687 Reims, France
| | - Clément Michelin
- CNRS, Université de Reims Champagne-Ardenne, ICMR, Equipe de Photochimie, UFR Sciences, B.P. 1039, 51687 Reims, France
| | - Thomas Martzel
- CNRS, Université de Reims Champagne-Ardenne, ICMR, Equipe de Photochimie, UFR Sciences, B.P. 1039, 51687 Reims, France
| | - Vaneck Djou’ou Mvondo
- CNRS, Université de Reims Champagne-Ardenne, ICMR, Equipe de Photochimie, UFR Sciences, B.P. 1039, 51687 Reims, France
| | - Véronique Bulach
- Laboratoire
de Tectonique Moléculaire (UMR 7140), Institut Le Bel, Université de Strasbourg, 4, rue Blaise Pascal, 67000 Strasbourg, France
| | - Manabu Abe
- Department
of Chemistry, Graduate School of Science, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-8526, Japan
- Hiroshima Research
Center for Photo-Drug-Delivery Systems (Hi-P-DDS), 1-3-1 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-8526, Japan
| | - Norbert Hoffmann
- CNRS, Université de Reims Champagne-Ardenne, ICMR, Equipe de Photochimie, UFR Sciences, B.P. 1039, 51687 Reims, France
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14
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Shen CC, Tsai TT, Wu JY, Ho JW, Chen YW, Cheng PY. Watching proton transfer in real time: Ultrafast photoionization-induced proton transfer in phenol-ammonia complex cation. J Chem Phys 2017; 147:164302. [PMID: 29096460 DOI: 10.1063/1.5001375] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
In this paper, we give a full account of our previous work [C. C. Shen et al., J. Chem. Phys. 141, 171103 (2014)] on the study of an ultrafast photoionization-induced proton transfer (PT) reaction in the phenol-ammonia (PhOH-NH3) complex using ultrafast time-resolved ion photofragmentation spectroscopy implemented by the photoionization-photofragmentation pump-probe detection scheme. Neutral PhOH-NH3 complexes prepared in a free jet are photoionized by femtosecond 1 + 1 resonance-enhanced multiphoton ionization via the S1 state. The evolving cations are then probed by delayed pulses that result in ion fragmentation, and the ionic dynamics is followed by measuring the parent-ion depletion as a function of the pump-probe delay time. By comparing with systems in which PT is not feasible and the steady-state ion photofragmentation spectra, we concluded that the observed temporal evolutions of the transient ion photofragmentation spectra are consistent with an intracomplex PT reaction after photoionization from the initial non-PT to the final PT structures. Our experiments revealed that PT in [PhOH-NH3]+ cation proceeds in two distinct steps: an initial impulsive wave-packet motion in ∼70 fs followed by a slower relaxation of about 1 ps that stabilizes the system into the final PT configuration. These results indicate that for a barrierless PT system, even though the initial PT motions are impulsive and ultrafast, the time scale to complete the reaction can be much slower and is determined by the rate of energy dissipation into other modes.
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Affiliation(s)
- Ching-Chi Shen
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan 30043, Republic of China
| | - Tsung-Ting Tsai
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan 30043, Republic of China
| | - Jun-Yi Wu
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan 30043, Republic of China
| | - Jr-Wei Ho
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan 30043, Republic of China
| | - Yi-Wei Chen
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan 30043, Republic of China
| | - Po-Yuan Cheng
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan 30043, Republic of China
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15
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Song K, Shi Q. Theoretical study of photoinduced proton coupled electron transfer reaction using the non-perturbative hierarchical equations of motion method. J Chem Phys 2017. [DOI: 10.1063/1.4982928] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Affiliation(s)
- Kai Song
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory for Structural Chemistry of Unstable and Stable Species, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun, Beijing 100190, China and University of Chinese Academy of Sciences, Beijing 100049, China
| | - Qiang Shi
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory for Structural Chemistry of Unstable and Stable Species, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun, Beijing 100190, China and University of Chinese Academy of Sciences, Beijing 100049, China
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16
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Affiliation(s)
- Norbert Hoffmann
- CNRS Université de Reims Champagne-Ardenne; ICMR; Université de Reims Champagne-Ardenne; B.P. 1039 51687 Reims France
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17
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Greene LE, Godin R, Cosa G. Fluorogenic Ubiquinone Analogue for Monitoring Chemical and Biological Redox Processes. J Am Chem Soc 2016; 138:11327-34. [DOI: 10.1021/jacs.6b06899] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Lana E. Greene
- Department of Chemistry and
Center for Self Assembled Chemical Structures (CSACS/CRMAA), McGill University, 801 Sherbrooke Street West, Montreal, Quebec H3G 0B8, Canada
| | - Robert Godin
- Department of Chemistry and
Center for Self Assembled Chemical Structures (CSACS/CRMAA), McGill University, 801 Sherbrooke Street West, Montreal, Quebec H3G 0B8, Canada
| | - Gonzalo Cosa
- Department of Chemistry and
Center for Self Assembled Chemical Structures (CSACS/CRMAA), McGill University, 801 Sherbrooke Street West, Montreal, Quebec H3G 0B8, Canada
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18
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Neidlinger A, Förster C, Heinze K. How Hydrogen Bonds Affect Reactivity and Intervalence Charge Transfer in Ferrocenium-Phenolate Radicals. Eur J Inorg Chem 2016. [DOI: 10.1002/ejic.201501471] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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19
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Neidlinger A, Kienz T, Heinze K. Spin Trapping of Carbon-Centered Ferrocenyl Radicals with Nitrosobenzene. Organometallics 2015. [DOI: 10.1021/acs.organomet.5b00778] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Andreas Neidlinger
- Institute of Inorganic and
Analytical Chemistry, Johannes Gutenberg-University, Duesbergweg 10-14, D-55128 Mainz, Germany
| | - Torben Kienz
- Institute of Inorganic and
Analytical Chemistry, Johannes Gutenberg-University, Duesbergweg 10-14, D-55128 Mainz, Germany
| | - Katja Heinze
- Institute of Inorganic and
Analytical Chemistry, Johannes Gutenberg-University, Duesbergweg 10-14, D-55128 Mainz, Germany
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20
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Morozova OB, Yurkovskaya AV. Modulation of the Rate of Reversible Electron Transfer in Oxidized Tryptophan and Tyrosine Containing Peptides in Acidic Aqueous Solution. J Phys Chem B 2014; 119:140-9. [DOI: 10.1021/jp511068n] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Olga B. Morozova
- International Tomography Center, Institutskaya
3a, 630090 Novosibirsk, Russia
| | - Alexandra V. Yurkovskaya
- International Tomography Center, Institutskaya
3a, 630090 Novosibirsk, Russia
- Novosibirsk State University, Pirogova
2, 630090, Novosibirsk, Russia
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21
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Dobkowski J, Wnuk P, Buczyńska J, Pszona M, Orzanowska G, Frath D, Ulrich G, Massue J, Mosquera-Vázquez S, Vauthey E, Radzewicz C, Ziessel R, Waluk J. Substituent and Solvent Effects on the Excited State Deactivation Channels in Anils and Boranils. Chemistry 2014; 21:1312-27. [DOI: 10.1002/chem.201404669] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2014] [Indexed: 12/22/2022]
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22
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Communication: Ultrafast time-resolved ion photofragmentation spectroscopy of photoionization-induced proton transfer in phenol-ammonia complex. J Chem Phys 2014; 141:171103. [DOI: 10.1063/1.4901329] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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23
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Affiliation(s)
- Norbert Hoffmann
- CNRS, Université de Reims Champagne-Ardenne; ICMR, Equipe de Photochimie; UFR Sciences, B.P. 1039 51687 Reims France
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24
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Bonin J, Costentin C, Robert M, Routier M, Savéant JM. Proton-Coupled Electron Transfers: pH-Dependent Driving Forces? Fundamentals and Artifacts. J Am Chem Soc 2013; 135:14359-66. [DOI: 10.1021/ja406712c] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Julien Bonin
- Université Paris Diderot, Sorbonne Paris Cité, Laboratoire d’Electrochimie
Moléculaire, Unité Mixte de Recherche Université
- CNRS no. 7591, Bâtiment Lavoisier, 15 rue Jean de Baïf, 75205 Paris Cedex 13, France
| | - Cyrille Costentin
- Université Paris Diderot, Sorbonne Paris Cité, Laboratoire d’Electrochimie
Moléculaire, Unité Mixte de Recherche Université
- CNRS no. 7591, Bâtiment Lavoisier, 15 rue Jean de Baïf, 75205 Paris Cedex 13, France
| | - Marc Robert
- Université Paris Diderot, Sorbonne Paris Cité, Laboratoire d’Electrochimie
Moléculaire, Unité Mixte de Recherche Université
- CNRS no. 7591, Bâtiment Lavoisier, 15 rue Jean de Baïf, 75205 Paris Cedex 13, France
| | - Mathilde Routier
- Université Paris Diderot, Sorbonne Paris Cité, Laboratoire d’Electrochimie
Moléculaire, Unité Mixte de Recherche Université
- CNRS no. 7591, Bâtiment Lavoisier, 15 rue Jean de Baïf, 75205 Paris Cedex 13, France
| | - Jean-Michel Savéant
- Université Paris Diderot, Sorbonne Paris Cité, Laboratoire d’Electrochimie
Moléculaire, Unité Mixte de Recherche Université
- CNRS no. 7591, Bâtiment Lavoisier, 15 rue Jean de Baïf, 75205 Paris Cedex 13, France
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25
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Neidlinger A, Ksenofontov V, Heinze K. Proton-Coupled Electron Transfer in Ferrocenium–Phenolate Radicals. Organometallics 2013. [DOI: 10.1021/om400498h] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Andreas Neidlinger
- Institute of Inorganic
and Analytical Chemistry, Johannes Gutenberg-University of Mainz, Duesbergweg
10-14, 55128 Mainz, Germany
| | - Vadim Ksenofontov
- Institute of Inorganic
and Analytical Chemistry, Johannes Gutenberg-University of Mainz, Staudinger
Weg 9, 55128 Mainz, Germany
| | - Katja Heinze
- Institute of Inorganic
and Analytical Chemistry, Johannes Gutenberg-University of Mainz, Duesbergweg
10-14, 55128 Mainz, Germany
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26
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Capello MC, Broquier M, Dedonder-Lardeux C, Jouvet C, Pino GA. Fast excited state dynamics in the isolated 7-azaindole-phenol H-bonded complex. J Chem Phys 2013; 138:054304. [DOI: 10.1063/1.4789426] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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27
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Keough JM, Zuniga AN, Jenson DL, Barry BA. Redox control and hydrogen bonding networks: proton-coupled electron transfer reactions and tyrosine Z in the photosynthetic oxygen-evolving complex. J Phys Chem B 2013; 117:1296-307. [PMID: 23346921 DOI: 10.1021/jp3118314] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
In photosynthetic oxygen evolution, redox active tyrosine Z (YZ) plays an essential role in proton-coupled electron transfer (PCET) reactions. Four sequential photooxidation reactions are necessary to produce oxygen at a Mn(4)CaO(5) cluster. The sequentially oxidized states of this oxygen-evolving cluster (OEC) are called the S(n) states, where n refers to the number of oxidizing equivalents stored. The neutral radical, YZ•, is generated and then acts as an electron transfer intermediate during each S state transition. In the X-ray structure, YZ, Tyr161 of the D1 subunit, is involved in an extensive hydrogen bonding network, which includes calcium-bound water. In electron paramagnetic resonance experiments, we measured the YZ• recombination rate, in the presence of an intact Mn(4)CaO(5) cluster. We compared the S(0) and S(2) states, which differ in Mn oxidation state, and found a significant difference in the YZ• decay rate (t(1/2) = 3.3 ± 0.3 s in S(0); t(1/2) = 2.1 ± 0.3 s in S(2)) and in the solvent isotope effect (SIE) on the reaction (1.3 ± 0.3 in S(0); 2.1 ± 0.3 in S(2)). Although the YZ site is known to be solvent accessible, the recombination rate and SIE were pH independent in both S states. To define the origin of these effects, we measured the YZ• recombination rate in the presence of ammonia, which inhibits oxygen evolution and disrupts the hydrogen bond network. We report that ammonia dramatically slowed the YZ• recombination rate in the S(2) state but had a smaller effect in the S(0) state. In contrast, ammonia had no significant effect on YD•, the stable tyrosyl radical. Therefore, the alterations in YZ• decay, observed with S state advancement, are attributed to alterations in OEC hydrogen bonding and consequent differences in the YZ midpoint potential/pK(a). These changes may be caused by activation of metal-bound water molecules, which hydrogen bond to YZ. These observations document the importance of redox control in proton-coupled electron transfer reactions.
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Affiliation(s)
- James M Keough
- School of Chemistry and Biochemistry and the Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
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28
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Ananth N, Miller TF. Flux-correlation approach to characterizing reaction pathways in quantum systems: a study of condensed-phase proton-coupled electron transfer. Mol Phys 2012. [DOI: 10.1080/00268976.2012.686641] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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29
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Tan SLJ, Webster RD. Electrochemically Induced Chemically Reversible Proton-Coupled Electron Transfer Reactions of Riboflavin (Vitamin B2). J Am Chem Soc 2012; 134:5954-64. [DOI: 10.1021/ja300191u] [Citation(s) in RCA: 83] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Serena L. J. Tan
- Division of Chemistry
and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, Singapore 637371
| | - Richard D. Webster
- Division of Chemistry
and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, Singapore 637371
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30
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Chipem FAS, Mishra A, Krishnamoorthy G. The role of hydrogen bonding in excited state intramolecular charge transfer. Phys Chem Chem Phys 2012; 14:8775-90. [DOI: 10.1039/c2cp23879a] [Citation(s) in RCA: 142] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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