Measuring functional connectivity using long-term monitoring data

Population synchrony indicates functional connectivity in a threatened sedentary butterfly

Dispersal is a key influence on species' persistence, particularly in the context of habitat fragmentation and environmental change. Previously, residual population synchrony has been demonstrated to be an effective proxy for dispersal in mobile butterflies (Powney et al. 2012). Here, we highlight the utility and limitations of population synchrony as an indicator of functional connectivity and persistence, at a range of spatial scales, in a specialist, sedentary butterfly. While at the local scale, population synchrony is likely indicative of dispersal in the pearl-bordered fritillary, Boloria euphrosyne, over larger scales, habitat is likely to influence population dynamics. Although declines in local-scale synchrony conformed to typical movement in this species, synchrony showed no significant trend with distance when studied at larger (between-site) scales. By focusing on specific site comparisons, we draw the conclusion that heterogeneity in habitat successional stage drives asynchrony between sites at larger distances and is, therefore, likely to be a more important driver of population dynamics over large distances than dispersal. Within-site assessments of synchrony highlight differences in dispersal based on habitat type, with movement shown to be most inhibited between transect sections with contrasting habitat permeability. While synchrony has implications for metapopulation stability and extinction risk, no significant difference was found in average site synchrony between sites that had gone extinct during the study period and those remaining occupied. We demonstrate that population synchrony may be used to assess local-scale movement between sedentary populations, as well as to understand barriers to dispersal and guide conservation management.

Co-designing an Indicator of Habitat Connectivity for England

Landscapes have been drastically transformed by human activities, generally resulting in the loss of semi-natural habitat. In the United Kingdom, wildlife habitat mainly consists of small patches of semi-natural habitat that are poorly connected to each other. In May 2019 the United Kingdom Government published an outcome indicator framework for measuring progress against the goals and outcomes of the 25 Year Environment Plan (YEP) for England. The indicator of the Quantity, Quality and Connectivity of Habitats (D1) is one of seven indicators within the Wildlife theme and it follows the principle of making areas of semi-natural habitat “more, bigger, better and joined up.” In this study, we describe the process of co-designing the connectivity metric for indicator D1. In consultation with experts and stakeholders we selected three candidate landscape connectivity metrics to produce the indicator. The first metric comes from a suite of rules of thumb for practitioners and it is the proportion of habitat patches in the landscape that have a nearest neighbor ≤ 1 km away. The second metric is a habitat fragmentation index from the Natural England National Biodiversity Climate Change Vulnerability Assessment Tool (NBCCVAT). The third and final metric is from the software Condatis and it represents the ability of a species to move through a landscape. We tested each metric on a set of simulated landscapes representing different levels of habitat addition strategies and different spatial configurations. We asked if the metrics are able to detect changes in the connectivity of each of these landscapes after habitat addition. Two of the three metrics (NBCCVAT and Condatis) performed well and were sensitive to change. They both increased as the total extent of habitat increased and each showed particular sensitivity to one spatial arrangement over the other. Given these results, one or both of these metrics could be used to produce the indicator. We discuss the implications of using one or both of the metrics and highlight the fundamental choices that need to be made to produce the indicator.

Both landscape and local factors influence plant and hexapod communities of industrial water‐abstraction sites

At the landscape level, intensification of agriculture, fragmentation, and destruction of natural habitats are major causes of biodiversity loss that can be mitigated at small spatial scales. However, the complex relationships between human activities, landscapes, and biodiversity are poorly known. Yet, this knowledge could help private stakeholders managing seminatural areas to play a positive role in biodiversity conservation.

We investigated how water‐abstraction sites could sustain species diversity in vascular‐plant communities and two taxonomic groups of insect communities in a fragmented agricultural landscape.

Landscape‐scale variables (connectivity indices and surrounding levels of herbicide use), as well as site‐specific variables (soil type for vascular plants, floral availability for Rhopalocera, and low herbaceous cover for Orthoptera), were correlated to structural and functional metrics of species community diversity for these taxonomic groups, measured on 35 industrial sites in the Ile‐de‐France region in 2018–2019.

Rhopalocera and Orthoptera consisted essentially of species with a high degree of dispersal and low specialization, able to reach the habitat patches of the fragmented landscape of the study area. Sandy soil harbored more diverse vascular‐plant communities. Plant diversity was correlated to a greater abundance of Rhopalocera and a lower richness of Orthoptera.

Increasing landscape connectivity was related to higher abundance of plants and Rhopalocera, and a higher evenness index for Orthoptera communities. Higher levels of herbicide use were related to a decrease in the biodiversity of plants and Rhopalocera abundance. High levels of herbicide favored high‐dispersal generalist plants, while high levels of connectivity favored low‐dispersal plants. Specialist Orthoptera species were associated with low herbaceous cover and connectivity.

Water‐abstraction sites are valuable seminatural habitats for biodiversity. Changing intensive agricultural practices in surrounding areas would better contribute to conserving and restoring biodiversity on these sites.

Intact landscape promotes gene flow and low genetic structuring in the threatened Eastern Massasauga Rattlesnake

Genetic structuring of wild populations is dependent on environmental, ecological, and life-history factors. The specific role environmental context plays in genetic structuring is important to conservation practitioners working with rare species across areas with varying degrees of fragmentation. We investigated fine-scale genetic patterns of the federally threatened Eastern Massasauga Rattlesnake (Sistrurus catenatus) on a relatively undisturbed island in northern Michigan, USA. This species often persists in habitat islands throughout much of its distribution due to extensive habitat loss and distance-limited dispersal. We found that the entire island population exhibited weak genetic structuring with spatially segregated variation in effective migration and genetic diversity. The low level of genetic structuring contrasts with previous studies in the southern part of the species' range at comparable fine scales (~7 km), in which much higher levels of structuring were documented. The island population's genetic structuring more closely resembles that of populations from Ontario, Canada, that occupy similarly intact habitats. Intrapopulation variation in effective migration and genetic diversity likely corresponds to the presence of large inland lakes acting as barriers and more human activity in the southern portion of the island. The observed genetic structuring in this intact landscape suggests that the Eastern Massasauga is capable of sufficient interpatch movements to reduce overall genetic structuring and colonize new habitats. Landscape mosaics with multiple habitat patches and localized barriers (e.g., large water bodies or roads) will promote gene flow and natural colonization for this declining species.

Perceptions of Similarity Can Mislead Provenancing Strategies—An Example from Five Co-Distributed Acacia Species

Ecological restoration requires balancing levels of genetic diversity to achieve present-day establishment as well as long-term sustainability. Assumptions based on distributional, taxonomic or functional generalizations are often made when deciding how to source plant material for restoration. We investigate this assumption and ask whether species-specific data is required to optimize provenancing strategies. We use population genetic and environmental data from five congeneric and largely co-distributed species of Acacia to specifically ask how different species-specific genetic provenancing strategies are based on empirical data and how well a simple, standardized collection strategy would work when applied to the same species. We find substantial variability in terms of patterns of genetic diversity and differentiation across the landscape among these five co-distributed Acacia species. This variation translates into substantial differences in genetic provenancing recommendations among species (ranging from 100% to less than 1% of observed genetic variation across species) that could not have been accurately predicted a priori based on simple observation or overall distributional patterns. Furthermore, when a common provenancing strategy was applied to each species, the recommended collection areas and the evolutionary representativeness of such artificially standardized areas were substantially different (smaller) from those identified based on environmental and genetic data. We recommend the implementation of the increasingly accessible array of evolutionary-based methodologies and information to optimize restoration efforts.

Habitat preference differentiates the Holocene range dynamics but not barrier effects on two sympatric, congeneric trees (Tristaniopsis, Myrtaceae)

Niche partitioning can lead to differences in the range dynamics of plant species through its impacts on habitat availability, dispersal, or selection for traits that affect colonization and persistence. We investigated whether niche partitioning into upland and riparian habitats differentiates the range dynamics of two closely related and sympatric eastern Australian trees: the mountain water gum (Tristaniopsis collina) and the water gum (T. laurina). Using genomic data from SNP genotyping of 480 samples, we assessed the impact of biogeographic barriers and tested for signals of range expansion. Circuit theory was used to model isolation-by-resistance across three palaeo-environment scenarios: the Last Glacial Maximum, the Holocene Climate Optimum and present-day (1950-2014). Both trees showed similar genetic structure across historically dry barriers, despite evidence of significant environmental niche differentiation and different post-glacial habitat shifts. Tristaniopsis collina exhibits the signature of serial founder effects consistent with recent or rapid range expansion, whilst T. laurina has genetic patterns consistent with long-term persistence in geographically isolated populations despite occupying a broader bioclimatic niche. We found the minor influence of isolation-by-resistance on both species, though other unknown factors appear to shape genetic variation. We postulate that specialized recruitment traits (adapted to flood-disturbance regimes) rather than habitat availability limited post-glacial range expansion in T. laurina. Our findings indicate that niche breadth does not always facilitate range expansion through colonization and migration across barriers, though it can promote long-term persistence in situ.

Inbreeding avoidance, patch isolation and matrix permeability influence dispersal and settlement choices by male agile antechinus in a fragmented landscape

Animal dispersal is highly non-random and has important implications for the dynamics of populations in fragmented habitat. We identified interpatch dispersal events from genetic tagging, parentage analyses and assignment tests and modelled the factors associated with apparent emigration and post-dispersal settlement choices by individual male agile antechinus (Antechinus agilis, a marsupial carnivore of south-east Australian forests). Emigration decisions were best modelled with on data patch isolation and inbreeding risk. The choice of dispersal destination by males was influenced by inbreeding risk, female abundance, patch size, patch quality and matrix permeability (variation in land cover). Males were less likely to settle in patches without highly unrelated females. Our findings highlight the importance of individual-level dispersal data for understanding how multiple processes drive non-randomness in dispersal in modified landscapes. Fragmented landscapes present novel environmental, demographic and genetic contexts in which dispersal decisions are made, so the major factors affecting dispersal decisions in fragmented habitat may differ considerably from unfragmented landscapes. We show that the spatial scale of genetic neighbourhoods can be large in fragmented habitat, such that dispersing males can potentially settle in the presence of genetically similar females after moving considerable distances, thereby necessitating both a choice to emigrate and a choice of where to settle to avoid inbreeding.