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Tagliacollo VA, Tan M, Reis RE, Gaia R, Carrijo V, Ranuzi M, Craig JM, Albert JS. Time-calibrated phylogeny of neotropical freshwater fishes. FRONTIERS IN BIOINFORMATICS 2024; 4:1433995. [PMID: 39711580 PMCID: PMC11659281 DOI: 10.3389/fbinf.2024.1433995] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Accepted: 11/18/2024] [Indexed: 12/24/2024] Open
Abstract
Neotropical Freshwater Fish (NFF) fauna exhibits the greatest phenotypic disparity and species richness among all continental aquatic vertebrate faunas, with more than 6,345 species distributed across the mostly tropical regions of Central and South America. The last two decades have seen a proliferation of molecular phylogenies, often at the species level, covering almost all 875 valid NFF genera. This study presents the most comprehensive genome-wide, time-calibrated phylogenetic hypothesis of NFF species to date, based on DNA sequences generated over decades through the collaborative efforts of the multinational ichthyological research community. Our purpose is to build and curate an extensive molecular dataset allowing researchers to evaluate macroevolutionary hypotheses in the NFF while facilitating continuous refinement and expansion. Using thousands of DNA sequences from dozens of studies, we compiled a supermatrix of 51 markers for 5,984 taxa, representing 3,167 NFF species. Based on this dataset, we built the most species-rich time-calibrated phylogeny of the NFF taxa to date, summarizing the collective efforts of the ichthyological research community since the midpoint of the last century. We provide a summary review of this remarkable evolutionary history and hope this dataset provides a framework for forthcoming studies of the NFF fauna, documenting compelling, emergent patterns in the world's most diverse continental vertebrate fauna.
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Affiliation(s)
- Victor A. Tagliacollo
- Institute of Biology, Federal University of Uberlândia, Uberlândia, Minas Gerais, Brazil
| | - Milton Tan
- Illinois Natural History Survey, University of Illinois at Urbana-Champaign, Champaign, IL, United States
| | - Roberto E. Reis
- Pontifical Catholic University of Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
| | - Ronielson Gaia
- Institute of Biology, Federal University of Uberlândia, Uberlândia, Minas Gerais, Brazil
| | - Virgilio Carrijo
- Institute of Biology, Federal University of Uberlândia, Uberlândia, Minas Gerais, Brazil
| | - Marcelo Ranuzi
- Institute of Biology, Federal University of Uberlândia, Uberlândia, Minas Gerais, Brazil
| | - Jack M. Craig
- Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States
| | - James S. Albert
- Department of Biology, University of Louisiana at Lafayette, Lafayette, LA, United States
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Lehmann Albornoz P, Bartzen CS, Malabarba LR. The barcode trap-Description of a new species of Microglanis, with a review of the status of Microglanis cibelae (Siluriformes: Pseudopimelodidae). JOURNAL OF FISH BIOLOGY 2024; 105:110-123. [PMID: 38646664 DOI: 10.1111/jfb.15764] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Revised: 03/27/2024] [Accepted: 04/02/2024] [Indexed: 04/23/2024]
Abstract
In a recent study based on the generalized mixed Yule coalescent method for delimiting species, a threshold of 2% genetic distance using cytochrome c oxidase subunit I sequences was used to delimit the species of Microglanis. That action resulted in assembling several populations of Microglanis from Atlantic coastal rivers between Rio Grande do Sul and São Paulo states as a single species, Microglanis cottoides, including Microglanis cibelae as a junior synonym. We reexamined these populations and found three species diagnosed by their morphology and that constitute separate mtDNA lineages, including a new species. The synonym of M. cibelae and M. cottoides is reviewed and refuted based on morphological and molecular evidence. M. cibelae and the new species are sympatric and occasionally syntopic in the Tramandaí, Mampituba, and Araranguá river basins. The new species is distinguished from M. cibelae and M. cottoides by the anterior margin of the posttemporosupracleitrum narrow articulated with the epioccipital, the short mental and maxillary barbels, and depressed head and body.
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Affiliation(s)
| | - César Sá Bartzen
- Universidade do Vale do Rio dos Sinos (Unisinos), São Leopoldo, Brazil
| | - Luiz R Malabarba
- Departamento de Zoologia, IB, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
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P Carvalho T, Tonolli Thomaz A, Urbano-Bonilla A, Prada-Pedreros S. A new characid species with remarkable sexual dimorphism (Characiformes: Characidae: Stevardiinae) from the upper Guayabero River, Orinoco basin, Colombia. JOURNAL OF FISH BIOLOGY 2024; 104:1947-1959. [PMID: 38553979 DOI: 10.1111/jfb.15738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 02/27/2024] [Accepted: 03/12/2024] [Indexed: 06/27/2024]
Abstract
A new species of characid with remarkable sexual characteristics is described from the upper Guayabero River drainage from the Orinoco basin in Colombia. The new species is included in the genus Monotocheirodon by sharing most of the previously proposed diagnostic features of this genus. It differs from all Stevardiinae by the combination, in adult males, of an enlarged urogenital papilla in contact with the first anal-fin unbranched ray and a highly modified anal fin with enlarged and distally elongated first and second branched anal-fin rays, forming a gonopodium-like structure. In addition, it differs from congeners by the presence of an adipose fin, an incomplete lateral line, an ascending process of the premaxilla dorsally oriented, and a long snout. The new species was discovered from a poorly sampled region in Colombia and is an unexpected new record given its disjunct geographic distribution from other species of the genus. Monotocheirodon species were previously known from piedmont drainages in Bolivia and Peru. The conservation status of the new species is herein categorized following IUCN criteria.
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Affiliation(s)
- Tiago P Carvalho
- Departamento de Biología, Facultad de Ciencias, Laboratorio de Ictiología, Unidad de Ecología y Sistemática (UNESIS), Pontificia Universidad Javeriana, Bogotá, Colombia
| | - Andréa Tonolli Thomaz
- Facultad de Ciencias, Departamento de Biología, Universidad Nacional de Colombia, Bogotá, Colombia
| | - Alexander Urbano-Bonilla
- Departamento de Biología, Facultad de Ciencias, Laboratorio de Ictiología, Unidad de Ecología y Sistemática (UNESIS), Pontificia Universidad Javeriana, Bogotá, Colombia
| | - Saúl Prada-Pedreros
- Departamento de Biología, Facultad de Ciencias, Laboratorio de Ictiología, Unidad de Ecología y Sistemática (UNESIS), Pontificia Universidad Javeriana, Bogotá, Colombia
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Souza CS, Mattox GMT, Vita G, Ochoa LE, Melo BF, Oliveira C. Molecular species delimitation and description of a new species of Phenacogaster (Teleostei, Characidae) from the southern Amazon basin. Zookeys 2023; 1164:1-21. [PMID: 37273974 PMCID: PMC10239021 DOI: 10.3897/zookeys.1164.102436] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Accepted: 04/27/2023] [Indexed: 06/06/2023] Open
Abstract
Phenacogaster is the most species-rich genus of the subfamily Characinae with 23 valid species broadly distributed in riverine systems of South America. Despite the taxonomic diversity of the genus, little has been advanced about its molecular diversity. A recent molecular phylogeny indicated the presence of undescribed species within Phenacogaster that is formally described here. We sampled 73 specimens of Phenacogaster and sequenced the mitochondrial cytochrome c oxidase subunit I (COI) gene in order to undertake species delimitation analyses and evaluate their intra- and interspecific genetic diversity. The results show the presence of 14 species, 13 of which are valid and one undescribed. The new species is known from the tributaries of the Xingu basin, the Rio das Mortes of the Araguaia basin, and the Rio Teles Pires of the Tapajós basin. It is distinguished by the incomplete lateral line, position of the humeral blotch near the pseudotympanum, and shape of the caudal-peduncle blotch. Meristic data and genetic differentiation relative to other Phenacogaster species represent strong evidence for the recognition of the new species and highlight the occurrence of an additional lineage of P.franciscoensis.
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Affiliation(s)
- Camila S. Souza
- Departamento de Biologia Estrutural e Funcional, Instituto de Biociências, Universidade Estadual Paulista, R. Prof. Dr. Antônio C. W. Zanin 250, 18618-689, Botucatu, SP, BrazilUniversidade Estadual PaulistaBotucatuBrazil
| | - George M. T. Mattox
- Laboratório de Ictiologia de Sorocaba, Departamento de Biologia, Universidade Federal de São Carlos, Rod. João Leme dos Santos km 110, 18052-780, Sorocaba, SP, BrazilUniversidade Federal de São CarlosSorocabaBrazil
| | - George Vita
- Museu de Zoologia da Universidade de São Paulo, Av. Nazaré 481, 04218-970, São Paulo, SP, BrazilMuseu de Zoologia da Universidade de São PauloSão PauloBrazil
| | - Luz E. Ochoa
- Dirección Académica, Universidad Nacional de Colombia, Sede de La Paz, Km 9 Via Valledupar, Los Robles La Paz, Cesar, ColombiaUniversidad Nacional de ColombiaLos Robles La PazColombia
| | - Bruno F. Melo
- Department of Ichthyology, American Museum of Natural History, 200 Central Park West, New York, NY 10024, USAAmerican Museum of Natural HistoryNew YorkUnited States of America
| | - Claudio Oliveira
- Departamento de Biologia Estrutural e Funcional, Instituto de Biociências, Universidade Estadual Paulista, R. Prof. Dr. Antônio C. W. Zanin 250, 18618-689, Botucatu, SP, BrazilUniversidade Estadual PaulistaBotucatuBrazil
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Chuctaya J, Nitschke P, Andrade MC, Wingert J, Malabarba LR. A new species of Geophagus (Teleostei: Cichlidae): Naming a cichlid species widely known in the aquarium hobby as 'Geophagus sp. Tapajos red head'. JOURNAL OF FISH BIOLOGY 2022; 101:1388-1404. [PMID: 36059085 DOI: 10.1111/jfb.15207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2021] [Accepted: 08/27/2022] [Indexed: 06/15/2023]
Abstract
A new species of Geophagus sensu stricto is described from the Tapajos River basin, Brazil, elevating the number of species of the genus to 21. The new species is of commercial importance and is known in the aquarist trade as Geophagus 'red head'. The new species is diagnosed using an integrative approach, based on mitochondrial DNA analysis along with morphological evidence. The new species is distinguished from all congeners by the absence of markings on the head, the bar pattern composed by nine vertical bars on the flanks and the presence of distinct longitudinal bands in the caudal fin. Additionally, it shows a genetic distance of at least 2.0% in cytochrome b gene sequences from its closest congeners. Molecular analysis including most genera of Cichlidae from South America corroborates that the new species belongs to the group of Geophagus sensu stricto.
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Affiliation(s)
- Junior Chuctaya
- Programa de Pós-Graduação em Biologia Animal, Departamento de Zoologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
- Laboratorio de Ictiología, Museo de Historia Natural, Universidad Nacional Mayor de San Marcos, Lima, Peru
| | - Pedro Nitschke
- Departamento de Ecologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
| | - Marcelo C Andrade
- Núcleo de Ecologia Aquática e Pesca da Amazônia, Universidade Federal do Pará, Belém, Brazil
- Centro de Ciências Humanas, Naturais, Saúde e Tecnologia, Universidade Federal do Maranhão, Pinheiro, Maranhão, Brazil
| | - Juliana Wingert
- Programa de Pós-Graduação em Biologia Animal, Departamento de Zoologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
| | - Luiz R Malabarba
- Programa de Pós-Graduação em Biologia Animal, Departamento de Zoologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
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Bertaco VA, Becker FG, Azevedo MA, Ferrer J, Behr ER, de Moraes TR, Fagundes NJR, Malabarba LR. The record and threats of the invasion of palometa Serrasalmus maculatus (Characiformes: Serrasalmidae) in the Patos lagoon drainage, southern Brazil. JOURNAL OF FISH BIOLOGY 2022; 101:1098-1103. [PMID: 35860911 DOI: 10.1111/jfb.15169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Accepted: 07/14/2022] [Indexed: 06/15/2023]
Abstract
We report the occurrence of an invasive alien species, palometa Serrasalmus maculatus, in the Patos Lagoon drainage. Primary occurrence data were based on three specimens captured and preserved as vouchers in scientific collections. Additionally, we searched for secondary records from unpublished scientific sources, public agencies reports and media news to find additional reports. We discussed the possible pathways of invasion, suggesting as the vector of introduction transpositions from the Uruguay River basin. Ecological implications for ichthyofauna, environmental impacts and risk of other events of invasion in the adjoining basins are discussed.
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Affiliation(s)
- Vinicius Araújo Bertaco
- Museu de Ciências Naturais, Secretaria do Meio Ambiente e Infraestrutura, Porto Alegre, RS, Brazil
| | - Fernando G Becker
- Programa de Pós-Graduação em Ecologia, Departamento de Ecologia, Instituto de Biociências, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil
| | - Marco A Azevedo
- Museu de Ciências Naturais, Secretaria do Meio Ambiente e Infraestrutura, Porto Alegre, RS, Brazil
| | - Juliano Ferrer
- Programa de Pós-Graduação em Biologia Animal, Instituto de Biociências, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil
| | - Everton R Behr
- Departamento de Zootecnia, Universidade Federal de Santa Maria, Santa Maria, RS, Brazil
| | | | - Nelson J R Fagundes
- Programa de Pós-Graduação em Biologia Animal, Instituto de Biociências, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil
- Programa de Pós-Graduação em Genética e Biologia Molecular, Instituto de Biociências, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil
| | - Luiz R Malabarba
- Programa de Pós-Graduação em Biologia Animal, Instituto de Biociências, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil
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Santos AACD, Bertaco VA, Lucena CASD. Revisão taxonômica de Psalidodon eigenmanniorum (Cope) com base em análises morfométrica, merística e padrão de colorido (Characiformes: Characidae). IHERINGIA. SERIE ZOOLOGIA 2022. [DOI: 10.1590/1678-4766e2022015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/03/2023]
Abstract
RESUMO A identidade de Psalidodon eigenmanniorum (Cope, 1894) e a possibilidade de se constituir em mais de uma espécie é testada através de análises da morfometria (19 medidas), dos caracteres merísticos (14 contagens) e do padrão de colorido de 705 exemplares provenientes dos sistemas dos rios Tramandaí/Mampituba, da laguna dos Patos e drenagem do baixo rio Uruguai. Foram diafanizados e corados 40 exemplares. Os dados morfométricos foram utilizados na Análise de Componentes Principais, Análise Discriminante, Morfometria Geométrica e Função Discriminante. As análises foram feitas considerando os sexos em separado dentro de cada sistema hidrográfico, bem como comparando as populações entre os sistemas hidrográficos e finalmente no conjunto de sistemas representando a área de ocorrência da espécie. A partir dos dados analisados não foram encontradas diferenças entre os sexos. Os resultados mostraram variação morfológica que não sustenta o reconhecimento de possíveis espécies crípticas. A variação encontrada nos dados merísticos, morfométricos e no padrão de colorido justifica a redescrição da espécie. Os resultados das comparações entre as populações indicaram variações nesses caracteres indicando que a espécie possui considerável plasticidade fenotípica.
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Affiliation(s)
- Arthur A. C. dos Santos
- Pontifícia Universidade Católica do Rio Grande do Sul, Brasil; Pontifícia Universidade Católica do Rio Grande do Sul, Brasil
| | | | - Carlos A. S de Lucena
- Pontifícia Universidade Católica do Rio Grande do Sul, Brasil; Pontifícia Universidade Católica do Rio Grande do Sul, Brasil
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Figueiredo PICC, Malabarba LR, Fagundes NJR. Hydrography rather than lip morphology better explains the evolutionary relationship between Gymnogeophagus labiatus and G. lacustris in Southern Brazil (Cichlidae: Geophagini). NEOTROPICAL ICHTHYOLOGY 2021. [DOI: 10.1590/1982-0224-2020-0154] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
ABSTRACT Gymnogeophagus labiatus and G. lacustris have been long recognized as sister species exhibiting different ecological requirements. Gymnogeophagus labiatus occurs in rock bottom rivers in the hydrographic basins of Patos Lagoon (HBP) and Tramandaí River (HBT), while G. lacustris is exclusive from sand bottom coastal lagoons of the HBT. In this study, we used molecular markers, morphological measurements and data from nuptial male coloration to investigate the evolutionary relationship between these species in each hydrographic basin. We found, for all data sets, a closer relationship between G. labiatus and G. lacustris from the HBT than between G. labiatus populations from HBT and HBP. In particular, lip area had a large intraspecific plasticity, being uninformative to diagnose G. lacustris from G. labiatus. Molecular clock-based estimates suggest a recent divergence between species in the HBT (17,000 years ago), but not between G. labiatus from HBP and HBT (3.6 millions of years ago). Finally, we also found a divergent G. labiatus genetic lineage from the Camaquã River, in the HBP. These results show that the current taxonomy of G. labiatus and G. lacustris does not properly represent evolutionary lineages in these species.
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Affiliation(s)
| | - Luiz R. Malabarba
- Universidade Federal do Rio Grande do Sul, Brazil; Universidade Federal do Rio Grande do Sul, Brazil
| | - Nelson J. R. Fagundes
- Universidade Federal do Rio Grande do Sul, Brazil; Universidade Federal do Rio Grande do Sul, Brazil; Universidade Federal do Rio Grande do Sul, Brazil
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