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Mishra S, Duarte GT, Horemans N, Ruytinx J, Gudkov D, Danchenko M. Complexity of responses to ionizing radiation in plants, and the impact on interacting biotic factors. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 924:171567. [PMID: 38460702 DOI: 10.1016/j.scitotenv.2024.171567] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Revised: 02/20/2024] [Accepted: 03/06/2024] [Indexed: 03/11/2024]
Abstract
In nature, plants are simultaneously exposed to different abiotic (e.g., heat, drought, and salinity) and biotic (e.g., bacteria, fungi, and insects) stresses. Climate change and anthropogenic pressure are expected to intensify the frequency of stress factors. Although plants are well equipped with unique and common defense systems protecting against stressors, they may compromise their growth and development for survival in such challenging environments. Ionizing radiation is a peculiar stress factor capable of causing clustered damage. Radionuclides are both naturally present on the planet and produced by human activities. Natural and artificial radioactivity affects plants on molecular, biochemical, cellular, physiological, populational, and transgenerational levels. Moreover, the fitness of pests, pathogens, and symbionts is concomitantly challenged in radiologically contaminated areas. Plant responses to artificial acute ionizing radiation exposure and laboratory-simulated or field chronic exposure are often discordant. Acute or chronic ionizing radiation exposure may occasionally prime the defense system of plants to better tolerate the biotic stress or could often exhaust their metabolic reserves, making plants more susceptible to pests and pathogens. Currently, these alternatives are only marginally explored. Our review summarizes the available literature on the responses of host plants, biotic factors, and their interaction to ionizing radiation exposure. Such systematic analysis contributes to improved risk assessment in radiologically contaminated areas.
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Affiliation(s)
- Shubhi Mishra
- Institute of Plant Genetics and Biotechnology, Plant Science and Biodiversity Centre, Slovak Academy of Sciences, 950 07 Nitra, Slovakia
| | - Gustavo Turqueto Duarte
- Unit for Biosphere Impact Studies, Belgian Nuclear Research Centre SCK CEN, 2400 Mol, Belgium
| | - Nele Horemans
- Unit for Biosphere Impact Studies, Belgian Nuclear Research Centre SCK CEN, 2400 Mol, Belgium; Centre for Environmental Sciences, Hasselt University, 3590 Diepenbeek, Belgium
| | - Joske Ruytinx
- Department of Bio-engineering Sciences, Vrije Universiteit Brussel, 1050 Brussels, Belgium
| | - Dmitri Gudkov
- Institute of Hydrobiology, National Academy of Sciences of Ukraine, 04210 Kyiv, Ukraine
| | - Maksym Danchenko
- Institute of Plant Genetics and Biotechnology, Plant Science and Biodiversity Centre, Slovak Academy of Sciences, 950 07 Nitra, Slovakia.
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Koufopanou V, Lomas S, Pronina O, Almeida P, Sampaio JP, Mousseau T, Liti G, Burt A. Population Size, Sex and Purifying Selection: Comparative Genomics of Two Sister Taxa of the Wild Yeast Saccharomyces paradoxus. Genome Biol Evol 2021; 12:1636-1645. [PMID: 33011797 PMCID: PMC7533043 DOI: 10.1093/gbe/evaa141] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/10/2020] [Indexed: 12/16/2022] Open
Abstract
This study uses population genomic data to estimate demographic and selection parameters in two sister lineages of the wild yeast Saccharomyces paradoxus and compare their evolution. We first estimate nucleotide and recombinational diversities in each of the two lineages to infer their population size and frequency of sex and then analyze the rate of mutation accumulation since divergence from their inferred common ancestor to estimate the generation time and efficacy of selection. We find that one of the lineages has significantly higher silent nucleotide diversity and lower linkage disequilibrium, indicating a larger population with more frequent sexual generations. The same lineage also shows shorter generation time and higher efficacy of purifying selection, the latter consistent with the finding of larger population size and more frequent sex. Similar analyses are also performed on the ancestries of individual strains within lineages and we find significant differences between strains implying variation in rates of mitotic cell divisions. Our sample includes some strains originating in the Chernobyl nuclear-accident exclusion zone, which has been subjected to high levels of radiation for nearly 30 years now. We find no evidence, however, for increased rates of mutation. Finally, there is a positive correlation between rates of mutation accumulation and length of growing period, as measured by latitude of the place of origin of strains. Our study illustrates the power of genomic analyses in estimating population and life history parameters and testing predictions based on population genetic theory.
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Affiliation(s)
- Vassiliki Koufopanou
- Department of Life Sciences, Imperial College London, Ascot, Berks, United Kingdom
| | - Susan Lomas
- Department of Life Sciences, Imperial College London, Ascot, Berks, United Kingdom
| | - Olga Pronina
- Institute of Cell Biology and Genetic Engineering, NAS of Ukraine, Kyiv, Ukraine
| | - Pedro Almeida
- Department of Genetics, Evolution & Environment, University College London, United Kingdom
| | - Jose Paulo Sampaio
- UCIBIO, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Portugal
| | | | - Gianni Liti
- CNRS, INSERM, IRCAN, Universite Cote d' Azur, Nice, France
| | - Austin Burt
- Department of Life Sciences, Imperial College London, Ascot, Berks, United Kingdom
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Arnaise S, Shykoff JA, Møller AP, Mousseau TA, Giraud T. Anther-smut fungi from more contaminated sites in Chernobyl show lower infection ability and lower viability following experimental irradiation. Ecol Evol 2020; 10:6409-6420. [PMID: 32724522 PMCID: PMC7381591 DOI: 10.1002/ece3.6376] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Revised: 04/25/2020] [Accepted: 04/27/2020] [Indexed: 11/07/2022] Open
Abstract
The long-term contamination that followed the nuclear disaster at Chernobyl provides a case study for the effects of chronic ionizing radiation on living organisms and on their ability to tolerate or evolve resistance to such radiation. Previously, we studied the fertility and viability of early developmental stages of a castrating plant pathogen, the anther-smut fungus Microbotryum lychnidis-dioicae, isolated from field sites varying over 700-fold in degree of radioactive contamination. Neither the budding rate of haploid spores following meiosis nor the karyotype structure varied with increasing radiation levels at sampling sites. Here, we assessed the ability of the same M. lychnidis-dioicae strains to perform their whole life cycle, up to the production of symptoms in the plants, that is, the development of anthers full of fungal spores; we also assessed their viability under experimental radiation. Fungal strains from more contaminated sites had no lower spore numbers in anthers or viability, but infected host plants less well, indicating lower overall fitness due to radioactivity exposure. These findings improve our understanding of the previous field data, in which the anther-smut disease prevalence on Silene latifolia plants caused by M. lychnidis-dioicae was lower at more contaminated sites. Although the fungus showed relatively high resistance to experimental radiation, we found no evidence that increased resistance to radiation has evolved in populations from contaminated sites. Fungal strains from more contaminated sites even tolerated or repaired damage from a brief acute exposure to γ radiation less well than those from non- or less contaminated sites. Our results more generally concur with previous studies in showing that the fitness of living organisms is affected by radiation after nuclear disasters, but that they do not rapidly evolve higher tolerance.
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Affiliation(s)
- Sylvie Arnaise
- Ecologie Systematique EvolutionCNRSUniversité Paris‐SaclayOrsayFrance
| | - Jacqui A. Shykoff
- Ecologie Systematique EvolutionCNRSUniversité Paris‐SaclayOrsayFrance
| | - Anders P. Møller
- Ecologie Systematique EvolutionCNRSUniversité Paris‐SaclayOrsayFrance
| | | | - Tatiana Giraud
- Ecologie Systematique EvolutionCNRSUniversité Paris‐SaclayOrsayFrance
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Beresford NA, Horemans N, Copplestone D, Raines KE, Orizaola G, Wood MD, Laanen P, Whitehead HC, Burrows JE, Tinsley MC, Smith JT, Bonzom JM, Gagnaire B, Adam-Guillermin C, Gashchak S, Jha AN, de Menezes A, Willey N, Spurgeon D. Towards solving a scientific controversy - The effects of ionising radiation on the environment. JOURNAL OF ENVIRONMENTAL RADIOACTIVITY 2020; 211:106033. [PMID: 31451195 DOI: 10.1016/j.jenvrad.2019.106033] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2019] [Accepted: 08/21/2019] [Indexed: 05/12/2023]
Affiliation(s)
- N A Beresford
- Centre for Ecology & Hydrology, CEH Lancaster, Lancaster Environment Centre, Library Av., Bailrigg, Lancaster, LA1 4AP, United Kingdom; School of Science, Engineering & Environment, University of Salford, Manchester, M5 4WT, United Kingdom.
| | - N Horemans
- Belgian Nuclear Research Centre (SCK●CEN), Boeretang 200, 2400, Mol, Belgium
| | - D Copplestone
- Faculty of Natural Sciences, University of Stirling, Stirling, FK9 4LA, United Kingdom
| | - K E Raines
- Faculty of Natural Sciences, University of Stirling, Stirling, FK9 4LA, United Kingdom
| | - G Orizaola
- Universidad de Oviedo - Campus de Mieres, Edificio de Investigación 5a Planta, C/ Gonzalo Gutiérrez Quirós s/n, 33600, Mieres-Asturias, Spain
| | - M D Wood
- School of Science, Engineering & Environment, University of Salford, Manchester, M5 4WT, United Kingdom
| | - P Laanen
- Belgian Nuclear Research Centre (SCK●CEN), Boeretang 200, 2400, Mol, Belgium; University of Hasselt, Martelarenlaan 42, 3500, Hasselt, Belgium
| | - H C Whitehead
- School of Science, Engineering & Environment, University of Salford, Manchester, M5 4WT, United Kingdom
| | - J E Burrows
- Faculty of Natural Sciences, University of Stirling, Stirling, FK9 4LA, United Kingdom
| | - M C Tinsley
- Faculty of Natural Sciences, University of Stirling, Stirling, FK9 4LA, United Kingdom
| | - J T Smith
- School of Earth and Environmental Sciences, University of Portsmouth, Portsmouth, PO1 3QL, United Kingdom
| | - J-M Bonzom
- IRSN, Centre de Cadarache, 13115, St Paul Lez Durance, France
| | - B Gagnaire
- IRSN, Centre de Cadarache, 13115, St Paul Lez Durance, France
| | | | - S Gashchak
- Chornobyl Center for Nuclear Safety, Radioactive Waste & Radioecology, International Radioecology Laboratory, 77th Gvardiiska Dyviiya Str.11, P.O. Box 151, 07100, Slavutych, Kiev Region, Ukraine
| | - A N Jha
- School of Biological and Marine Sciences, University of Plymouth, Plymouth, PL4 8AA, United Kingdom
| | - A de Menezes
- Ryan Institute, School of Natural Sciences, National University of Ireland Galway, Ireland
| | - N Willey
- Centre for Research in Bioscience, Dept. of Applied Sciences, University of the West of England, Frenchay, BS16 1QY, Bristol, United Kingdom
| | - D Spurgeon
- Centre for Ecology & Hydrology, Wallingford, Oxfordshire, OX10 8BB, United Kingdom
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Mousseau TA, Møller AP. Plants in the Light of Ionizing Radiation: What Have We Learned From Chernobyl, Fukushima, and Other "Hot" Places? FRONTIERS IN PLANT SCIENCE 2020; 11:552. [PMID: 32457784 PMCID: PMC7227407 DOI: 10.3389/fpls.2020.00552] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2019] [Accepted: 04/14/2020] [Indexed: 05/13/2023]
Abstract
Perhaps the main factor determining success of space travel will be the ability to control effects of ionizing radiation for humans, but also for other living organisms. Manned space travel will require the cultivation of food plants under conditions of prolonged exposure to ionizing radiation. Although there is a significant literature concerning the effects of acute high dose rate exposures on plant genetics, growth, and development, much less is known concerning the effects of chronic low dose irradiation especially those related to the impacts of the high energy protons and heavy ions that are encountered in the space environment. Here, we make the argument that in situ studies of the effects of radionuclides at nuclear accident sites (e.g., Chernobyl and Fukushima), atomic bomb test sites, and areas of naturally high radiation levels, could provide insights concerning the mechanisms of radiation effects on living systems that cannot be assessed short of conducting research in space, which is not yet feasible for large scale, long term, multigenerational experiments. In this article we review the literature concerning the effects of chronic low-dose rate radiation exposure from studies conducted in Chernobyl, Fukushima, and other regions of the world with high ambient radiation levels (parts of India in particular). In general, mutation rates and other measures of genetic damage are considerably elevated, pollen and seed viability are reduced, growth rates are slower, and the frequency of developmental abnormalities is increased, although there is considerable variation among taxa for these effects. In addition, there are interactions between radiation and other environmental stressors (e.g., temperature, drought, heavy metals) that may play important roles in determining susceptibility to radiation induced stress.
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Affiliation(s)
- Timothy A. Mousseau
- Department of Biological Sciences, University of South Carolina, Columbia, SC, United States
- SURA/LASSO/NASA, ISS Utilization and Life Sciences Division, Kennedy Space Center, Cape Canaveral, FL, United States
- *Correspondence: Timothy A. Mousseau,
| | - Anders Pape Møller
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, College of Life Sciences, Beijing Normal University, Beijing, China
- Ecologie Systématique Evolution, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Orsay, France
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Hartmann FE, Rodríguez de la Vega RC, Carpentier F, Gladieux P, Cornille A, Hood ME, Giraud T. Understanding Adaptation, Coevolution, Host Specialization, and Mating System in Castrating Anther-Smut Fungi by Combining Population and Comparative Genomics. ANNUAL REVIEW OF PHYTOPATHOLOGY 2019; 57:431-457. [PMID: 31337277 DOI: 10.1146/annurev-phyto-082718-095947] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Anther-smut fungi provide a powerful system to study host-pathogen specialization and coevolution, with hundreds of Microbotryum species specialized on diverse Caryophyllaceae plants, castrating their hosts through manipulation of the hosts' reproductive organs to facilitate disease transmission. Microbotryum fungi have exceptional genomic characteristics, including dimorphic mating-type chromosomes, that make this genus anexcellent model for studying the evolution of mating systems and their influence on population genetics structure and adaptive potential. Important insights into adaptation, coevolution, host specialization, and mating system evolution have been gained using anther-smut fungi, with new insights made possible by the recent advent of genomic approaches. We illustrate with Microbotryum case studies how using a combination of comparative genomics, population genomics, and transcriptomics approaches enables the integration of different evolutionary perspectives across different timescales. We also highlight current challenges and suggest future studies that will contribute to advancing our understanding of the mechanisms underlying adaptive processes in populations of fungal pathogens.
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Affiliation(s)
- Fanny E Hartmann
- Ecologie Systématique Evolution, Univ. Paris-Sud, AgroParisTech, CNRS, Université Paris-Saclay, 91400 Orsay, France;
| | | | - Fantin Carpentier
- Ecologie Systématique Evolution, Univ. Paris-Sud, AgroParisTech, CNRS, Université Paris-Saclay, 91400 Orsay, France;
| | - Pierre Gladieux
- UMR BGPI, Univ. Montpellier, INRA, CIRAD, Montpellier SupAgro, 34398 Montpellier, France
| | - Amandine Cornille
- Génétique Quantitative et Evolution-Le Moulon, INRA; Univ. Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, 91198 Gif-sur-Yvette, France
| | - Michael E Hood
- Biology Department, Amherst College, Amherst, Massachusetts 01002-5000, USA
| | - Tatiana Giraud
- Ecologie Systématique Evolution, Univ. Paris-Sud, AgroParisTech, CNRS, Université Paris-Saclay, 91400 Orsay, France;
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Ziegler R, Lutz M, Piątek J, Piątek M. Dismantling a complex of anther smuts (Microbotryum) on carnivorous plants in the genus Pinguicula. Mycologia 2018; 110:361-374. [PMID: 29792777 DOI: 10.1080/00275514.2018.1451697] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
The anther smuts of the genus Microbotryum are known from host plant species belonging to the Caryophyllaceae, Dipsacaceae, Lamiaceae, Lentibulariaceae, Montiaceae, and Primulaceae. Of these, the anther smuts on Caryophyllaceae, in particular on Silene spp., are best known because they include model organisms studied in many disciplines of fungal biology. For Microbotryum species parasitic on Caryophyllaceae, a high degree of host specificity was revealed and several cryptic species were described. In contrast, the host specificity within Microbotryum pinguiculae occurring in anthers of different Pinguicula species (Lentibulariaceae) has not been investigated in detail until now. The anther smuts on Pinguicula alpina, P. villosa, and P. vulgaris, on which M. pinguiculae was described, were analyzed using nuc rDNA ITS1-5.8S-ITS2 and nuc rDNA 28S D1-D2 sequences and morphology to determine if they belong to one polyphagous species or rather represent three host-specific species. The results of the morphological investigations revealed no decisive differences between the anther smuts on different Pinguicula species. However, genetic divergence and molecular phylogenetic analyses, which split the specimens according to host plant species, supported host specificity of the anther smuts on different Pinguicula species. Accordingly, in addition to Microbotryum pinguiculae s. str. on Pinguicula vulgaris, M. alpinum sp. nov. on P. alpina from Europe and M. liroi sp. nov. on P. villosa from Asia are described and illustrated.
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Affiliation(s)
- Rebekka Ziegler
- a Plant Evolutionary Ecology , Institute of Evolution and Ecology, University of Tübingen , Auf der Morgenstelle 5, D-72076 Tübingen , Germany
| | - Matthias Lutz
- a Plant Evolutionary Ecology , Institute of Evolution and Ecology, University of Tübingen , Auf der Morgenstelle 5, D-72076 Tübingen , Germany
| | - Jolanta Piątek
- b Department of Phycology , W. Szafer Institute of Botany, Polish Academy of Sciences , Lubicz 46, PL-31-512 Kraków , Poland
| | - Marcin Piątek
- c Department of Mycology , W. Szafer Institute of Botany, Polish Academy of Sciences , Lubicz 46, PL-31-512 Kraków , Poland
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