Selection on a behaviour-related gene during the first stages of the biological invasion pathway

Better Alone Than in Bad Company: Trophic Ecology of Co-Occurring Invasive and Native Crayfish

The North American signal crayfish, Pacifastacus leniusculus, is one of the most successful invasive crayfish species in Europe. Its broad trophic niche and ability to exploit various food sources across different trophic levels, coupled with the spread of lethal crayfish disease, pose significant threats to native crayfish populations. However, documentation of co-occurrence between invasive signal crayfish and native crayfish in invaded freshwater ecosystems remains rare, and research on their coexistence remains limited. In an Italian stream, signal crayfish coexist with native, white-clawed crayfish, Austropotamobius pallipes. This study investigated the trophic ecology of signal crayfish and white-clawed crayfish at sites where they co-occurred versus those where they occurred alone. We evaluated whether ecological traits, such as trophic niche, the presence of crayfish plague (Aphanomyces astaci), and body condition of signal crayfish at the invasion front, facilitated the invasion progress of signal crayfish and replacement of native white-clawed crayfish. The research employed stable isotope analyses of carbon and nitrogen, using SIBER and MixSIAR mixing models, along with stomach content analyses and Fulton and hepatopancreas indices. When the two species occurred alone, they exhibited trophic niche partitioning. When they coexisted, their trophic niches significantly overlapped. Specifically, signal crayfish shifted their trophic niche to that of white-clawed crayfish, changing from a predatory-omnivorous diet to a primary consumer. A greater occurrence of crayfish was found in the stomachs of signal crayfish compared to white-clawed crayfish, indicating higher cannibalistic behaviour, while both species consumed substantial proportions of macroinvertebrates, detritus, and periphyton when co-occurring. In general, signal crayfish exhibited better conditions when co-occurring with native species compared to allopatric individuals, suggesting higher strength in individuals at the invasion front. This study highlights the complex dynamics of invasive and native crayfish interactions, emphasising the greater trophic plasticity and improved biological conditions exhibited by invasive signal crayfish during co-occurrence.

DRD4 allele frequencies in greylag geese vary between urban and rural sites

With the increasing urbanization of the last decades, more and more bird species occur in urban habitats. Birds which thrive in urban habitats often have a higher tolerance toward human disturbance and show behaviors which differ from their rural counterparts. There is increasing evidence that many behaviors have a genetic basis. One candidate gene is the dopamine receptor D4 (DRD4), which has been associated with fear and thus, flight initiation distance (FID). In this study, we analyzed a segment of DRD4 in greylag geese Anser anser, describing the variability of this gene across several geographically distant populations, and comparing its variability between an urban and a rural site in south-west Germany. We additionally measured FIDs of urban and rural geese to test for a possible correlation with DRD4 genotypes. We found a high variation within DRD4, with 10 variable sites leading to 11 alleles and 35 genotypes. Two genotypes occurred in 60% of all geese and were thus defined as common genotypes versus 33 rare genotypes. Population differentiation was very low between the urban and rural sites in Germany but common genotypes occurred more often in the urban area and rare genotypes more often in the rural area. FID was significantly higher at the rural site, but no significant correlation between FID and DRD4 genotypes could be detected. Nevertheless, our results suggest that local site selection may be related to DRD4 genotypes.

Biological invasions as a selective filter driving behavioral divergence

Biological invasions are a multi-stage process (i.e., transport, introduction, establishment, spread), with each stage potentially acting as a selective filter on traits associated with invasion success. Behavior (e.g., exploration, activity, boldness) plays a key role in facilitating species introductions, but whether invasion acts as a selective filter on such traits is not well known. Here we capitalize on the well-characterized introduction of an invasive lizard (Lampropholis delicata) across three independent lineages throughout the Pacific, and show that invasion shifted behavioral trait means and reduced among-individual variation-two key predictions of the selective filter hypothesis. Moreover, lizards from all three invasive ranges were also more behaviorally plastic (i.e., greater within-individual variation) than their native range counterparts. We provide support for the importance of selective filtering of behavioral traits in a widespread invasion. Given that invasive species are a leading driver of global biodiversity loss, understanding how invasion selects for specific behaviors is critical for improving predictions of the effects of alien species on invaded communities.

Constitutive gene expression differs in three brain regions important for cognition in neophobic and non-neophobic house sparrows (Passer domesticus)

Neophobia (aversion to new objects, food, and environments) is a personality trait that affects the ability of wildlife to adapt to new challenges and opportunities. Despite the ubiquity and importance of this trait, the molecular mechanisms underlying repeatable individual differences in neophobia in wild animals are poorly understood. We evaluated wild-caught house sparrows (Passer domesticus) for neophobia in the lab using novel object tests. We then selected a subset of neophobic and non-neophobic individuals (n = 3 of each, all females) and extracted RNA from four brain regions involved in learning, memory, threat perception, and executive function: striatum, caudal dorsomedial hippocampus, medial ventral arcopallium, and caudolateral nidopallium (NCL). Our analysis of differentially expressed genes (DEGs) used 11,889 gene regions annotated in the house sparrow reference genome for which we had an average of 25.7 million mapped reads/sample. PERMANOVA identified significant effects of brain region, phenotype (neophobic vs. non-neophobic), and a brain region by phenotype interaction. Comparing neophobic and non-neophobic birds revealed constitutive differences in DEGs in three of the four brain regions examined: hippocampus (12% of the transcriptome significantly differentially expressed), striatum (4%) and NCL (3%). DEGs included important known neuroendocrine mediators of learning, memory, executive function, and anxiety behavior, including serotonin receptor 5A, dopamine receptors 1, 2 and 5 (downregulated in neophobic birds), and estrogen receptor beta (upregulated in neophobic birds). These results suggest that some of the behavioral differences between phenotypes may be due to underlying gene expression differences in the brain. The large number of DEGs in neophobic and non-neophobic birds also implies that there are major differences in neural function between the two phenotypes that could affect a wide variety of behavioral traits beyond neophobia.

Local selection signals in the genome of Blue tits emphasize regulatory and neuronal evolution

Understanding the genomic landscape of adaptation is central to the understanding of microevolution in wild populations. Genomic targets of selection and the underlying genomic mechanisms of adaptation can be elucidated by genome-wide scans for past selective sweeps or by scans for direct fitness associations. We sequenced and assembled 150 haplotypes of 75 Blue tits (Cyanistes caeruleus) of a single central-European population by a linked-read technology. We used these genome data in combination with coalescent simulations (1) to estimate an historical effective population size of ~250,000, which recently declined to ~10,000, and (2) to identify genome-wide distributed selective sweeps of beneficial variants most likely originating from standing genetic variation (soft sweeps). The genes linked to these soft sweeps, but also the ones linked to hard sweeps based on new beneficial mutants, showed a significant enrichment for functions associated with gene expression and transcription regulation. This emphasizes the importance of regulatory evolution in the population's adaptive history. Soft sweeps were further enriched for genes related to axon and synapse development, indicating the significance of neuronal connectivity changes in the brain potentially linked to behavioural adaptations. A previous scan of heterozygosity-fitness correlations revealed a consistent negative effect on arrival date at the breeding site for a single microsatellite in the MDGA2 gene. Here, we used the haplotype structure around this microsatellite to explain the effect as a local and direct outbreeding effect of a gene involved in synapse development.

Population differences in the effect of context on personality in an invasive lizard

Within populations, individuals often differ consistently in their average level of behavior (i.e., animal personality), as well as their response to environmental change (i.e., behavioral plasticity). Thus, changes in environmental conditions might be expected to mediate the structure of animal personality traits. However, it is currently not well understood how personality traits change in response to environmental conditions, and whether this effect is consistent across multiple populations within the same species. Accordingly, we investigated variation in personality traits across two ecological contexts in the invasive delicate skink (Lampropholis delicata). Specifically, lizards from three different populations were repeatedly measured for individual activity in group behavioral assays under differing levels of food availability. We found that environmental context had a clear effect on the structure of lizard personality, where activity rates were not repeatable in the absence of food, but were repeatable in the presence of food resources. The difference in repeatability of activity rates across contexts appeared to be largely driven by an increase in among-individual variance when tested in the presence of food resources. However, this was only true for one of the populations tested, with food context having no effect on the expression of personality traits in the other two populations. Our results highlight the important role of environmental context in mediating the structure of animal personality traits and suggest that this effect may vary among populations.

Selection on individuals of introduced species starts before the actual introduction

Biological invasion is a global problem with large negative impacts on ecosystems and human societies. When a species is introduced, individuals will first have to pass through the invasion stages of uptake and transport, before actual introduction in a non-native range. Selection is predicted to act during these earliest stages of biological invasion, potentially influencing the invasiveness and/or impact of introduced populations. Despite this potential impact of pre-introduction selection, empirical tests are virtually lacking. To test the hypothesis of pre-introduction selection, we followed the fate of individuals during capture, initial acclimation, and captivity in two bird species with several invasive populations originating from the international trade in wild-caught pets (the weavers Ploceus melanocephalus and Euplectes afer). We confirm that pre-introduction selection acts on a wide range of physiological, morphological, behavioral, and demographic traits (incl. sex, age, size of body/brain/bill, bill shape, body mass, corticosterone levels, and escape behavior); these are all traits which likely affect invasion success. Our study thus comprehensively demonstrates the existence of hitherto ignored selection acting before the actual introduction into non-native ranges. This could ultimately change the composition and functioning of introduced populations, and therefore warrants greater attention. More knowledge on pre-introduction selection also might provide novel targets for the management of invasive species, if pre-introduction filters can be adjusted to change the quality and/or quantity of individuals passing through such that invasion probability and/or impacts are reduced.

Population structure, demographic history and local adaptation of the grass carp

BACKGROUND

Genetic diversity within a species reflects population evolution, ecology, and ability to adapt. Genome-wide population surveys of both natural and introduced populations provide insights into genetic diversity, the evolutionary processes and the genetic basis underlying local adaptation. Grass carp is the most important freshwater foodfish species for food and water weed control. However, there is as yet no overall picture on genetic variations and population structure of this species, which is important for its aquaculture.

RESULTS

We used 43,310 SNPs to infer the population structure, evidence of local adaptation and sources of introduction. The overall genetic differentiation of this species was low. The native populations were differentiated into three genetic clusters, corresponding to the Yangtze, Pearl and Heilongjiang River Systems, respectively. The populations in Malaysia, India and Nepal were introduced from both the Yangtze and Pearl River Systems. Loci and genes involved in putative local selection for native locations were identified. Evidence of both positive and balancing selection was found in the introduced locations. Genes associated with loci under putative selection were involved in many biological functions. Outlier loci were grouped into clusters as genomic islands within some specific genomic regions, which likely agrees with the divergence hitchhiking scenario of divergence-with-gene-flow.

CONCLUSIONS

This study, for the first time, sheds novel insights on the population differentiation of the grass carp, genetics of its strong ability in adaption to diverse environments and sources of some introduced grass carp populations. Our data also suggests that the natural populations of the grass carp have been affected by the aquaculture besides neutral and adaptive forces.