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For: Chao Y, Chen W, Chen C, Ho H, Yeh C, Kuo Y, Su C, Yen S, Hsueh H, Yeh J, Hsu H, Tsai Y, Kuo T, Chang S, Chen K, Shih M. Chromosome-level assembly, genetic and physical mapping of Phalaenopsis aphrodite genome provides new insights into species adaptation and resources for orchid breeding. Plant Biotechnol J 2018;16:2027-2041. [PMID: 29704444 PMCID: PMC6230949 DOI: 10.1111/pbi.12936] [Citation(s) in RCA: 60] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/18/2018] [Revised: 04/04/2018] [Accepted: 04/07/2018] [Indexed: 05/04/2023]
Number Cited by Other Article(s)
1
Tu M, Liu N, He Z, Dong X, Gao T, Zhu A, Yang J, Zhang S. Integrative omics reveals mechanisms of biosynthesis and regulation of floral scent in Cymbidium tracyanum. PLANT BIOTECHNOLOGY JOURNAL 2025;23:2162-2181. [PMID: 40091604 PMCID: PMC12120893 DOI: 10.1111/pbi.70025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/01/2024] [Revised: 01/20/2025] [Accepted: 02/10/2025] [Indexed: 03/19/2025]
2
Guan Y, Zhang Q, Zhang T, Li M, Ai Y, Zhai J, Lan S, Liu ZJ, Wu S, Peng D. Transcriptome analysis reveals the mechanisms underlying petal growth during the flower opening process in Phalaenopsis orchids. BMC PLANT BIOLOGY 2025;25:696. [PMID: 40413394 DOI: 10.1186/s12870-025-06713-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2024] [Accepted: 05/13/2025] [Indexed: 05/27/2025]
3
Jiang K, Møller BL, Luo S, Yang Y, Nelson DR, Jakobsen Neilson EH, Christensen JM, Hua K, Hu C, Zeng X, Motawie MS, Wan T, Hu GW, Onjalalaina GE, Wang Y, Gaitán-Espitia JD, Wang Z, Xu XY, He J, Wang L, Li Y, Peng DH, Lan S, Zhang H, Wang QF, Liu ZJ, Huang WC. Genomic, transcriptomic, and metabolomic analyses reveal convergent evolution of oxime biosynthesis in Darwin's orchid. MOLECULAR PLANT 2025;18:392-415. [PMID: 39702965 DOI: 10.1016/j.molp.2024.12.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2024] [Revised: 11/11/2024] [Accepted: 12/16/2024] [Indexed: 12/21/2024]
4
Chen YY, Sun Y, Li CI, Lin ST, Zheng HC, Zhang ZB, Lee BR, Hsieh CL, Hsiao YY, Chow CN, Yang CW, Chang WC, Chen H, Yang FX, Zhu GF, Zheng Q, Zhou CY, Zhao Z, Ai Y, Wang LY, Chen D, He X, Huang MZ, Peng DH, Yu H, Lan S, Liu ZJ, Wu WS, Tsai WC. OrchidBase 6.0: increasing the number of Cymbidium (Orchidaceae) genomes and new bioinformatic tools for orchid genome analysis. BMC PLANT BIOLOGY 2025;25:1. [PMID: 39748253 PMCID: PMC11697506 DOI: 10.1186/s12870-024-06024-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2024] [Accepted: 12/26/2024] [Indexed: 01/04/2025]
5
Guizar Amador MF, Darragh K, Liu JW, Dean C, Bogarín D, Pérez-Escobar OA, Serracín Z, Pupulin F, Ramírez SR. The Gongora gibba genome assembly provides new insights into the evolution of floral scent in male euglossine bee-pollinated orchids. G3 (BETHESDA, MD.) 2024;14:jkae211. [PMID: 39231006 PMCID: PMC11540329 DOI: 10.1093/g3journal/jkae211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Accepted: 08/22/2024] [Indexed: 09/06/2024]
6
Chen JC, Lin HY, Novák O, Strnad M, Lee YI, Fang SC. Diverse geotropic responses in the orchid family. PLANT, CELL & ENVIRONMENT 2024;47:3828-3845. [PMID: 38809156 DOI: 10.1111/pce.14975] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Revised: 03/28/2024] [Accepted: 05/14/2024] [Indexed: 05/30/2024]
7
Li J, Wen J, Wu K, Li L, Fang L, Zeng S. Integrating Physiology, Cytology, and Transcriptome to Reveal the Leaf Variegation Mechanism in Phalaenopsis Chia E Yenlin Variegata Leaves. Biomolecules 2024;14:963. [PMID: 39199351 PMCID: PMC11352648 DOI: 10.3390/biom14080963] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2024] [Revised: 08/01/2024] [Accepted: 08/05/2024] [Indexed: 09/01/2024]  Open
8
Wang Y, Wang H, Ye C, Wang Z, Ma C, Lin D, Jin X. Progress in systematics and biogeography of Orchidaceae. PLANT DIVERSITY 2024;46:425-434. [PMID: 39280975 PMCID: PMC11390685 DOI: 10.1016/j.pld.2024.05.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 05/10/2024] [Accepted: 05/13/2024] [Indexed: 09/18/2024]
9
Guan Y, Zhang Q, Li M, Zhai J, Wu S, Ahmad S, Lan S, Peng D, Liu ZJ. Genome-Wide Identification and Expression Pattern Analysis of TIFY Family Genes Reveal Their Potential Roles in Phalaenopsis aphrodite Flower Opening. Int J Mol Sci 2024;25:5422. [PMID: 38791460 PMCID: PMC11121579 DOI: 10.3390/ijms25105422] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Revised: 05/13/2024] [Accepted: 05/14/2024] [Indexed: 05/26/2024]  Open
10
Wong DCJ, Wang Z, Perkins J, Jin X, Marsh GE, John EG, Peakall R. The road less taken: Dihydroflavonol 4-reductase inactivation and delphinidin anthocyanin loss underpins a natural intraspecific flower colour variation. Mol Ecol 2024:e17334. [PMID: 38651763 DOI: 10.1111/mec.17334] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 02/22/2024] [Accepted: 03/20/2024] [Indexed: 04/25/2024]
11
Xie X, Lin M, Xiao G, Wang Q, Li Z. Identification and Characterization of the AREB/ABF Gene Family in Three Orchid Species and Functional Analysis of DcaABI5 in Arabidopsis. PLANTS (BASEL, SWITZERLAND) 2024;13:774. [PMID: 38592811 PMCID: PMC10974128 DOI: 10.3390/plants13060774] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Revised: 02/29/2024] [Accepted: 03/07/2024] [Indexed: 04/11/2024]
12
Li R, Gao X, Wu Y, Wei C, Li MH, Liu DK, Liu ZJ. Identification and Analysis of PEPC Gene Family Reveals Functional Diversification in Orchidaceae and the Regulation of Bacterial-Type PEPC. Int J Mol Sci 2024;25:2055. [PMID: 38396732 PMCID: PMC10888551 DOI: 10.3390/ijms25042055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2023] [Revised: 01/29/2024] [Accepted: 02/05/2024] [Indexed: 02/25/2024]  Open
13
Wu YJ, Chen SY, Hsu FC, Wu WL, Hsieh TF, Su JF, Lai YH, Lai PC, Chen WH, Chen HH. PeCIN8 expression correlates with flower size and resistance to yellow leaf disease in Phalaenopsis orchids. BMC PLANT BIOLOGY 2023;23:545. [PMID: 37936061 PMCID: PMC10629045 DOI: 10.1186/s12870-023-04567-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Accepted: 10/27/2023] [Indexed: 11/09/2023]
14
Partap M, Verma V, Thakur M, Bhargava B. Designing of future ornamental crops: a biotechnological driven perspective. HORTICULTURE RESEARCH 2023;10:uhad192. [PMID: 38023473 PMCID: PMC10681008 DOI: 10.1093/hr/uhad192] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Accepted: 09/14/2023] [Indexed: 12/01/2023]
15
Yang F, Guo Y, Li J, Lu C, Wei Y, Gao J, Xie Q, Jin J, Zhu G. Genome-wide association analysis identified molecular markers and candidate genes for flower traits in Chinese orchid (Cymbidium sinense). HORTICULTURE RESEARCH 2023;10:uhad206. [PMID: 38046850 PMCID: PMC10689080 DOI: 10.1093/hr/uhad206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/03/2023] [Accepted: 10/07/2023] [Indexed: 12/05/2023]
16
Li Y, Zhao X, Zhang MM, He X, Huang Y, Ahmad S, Liu ZJ, Lan S. Genome-based identification of the CYP75 gene family in Orchidaceae and its expression patterns in Cymbidium goeringii. FRONTIERS IN PLANT SCIENCE 2023;14:1243828. [PMID: 37828920 PMCID: PMC10564990 DOI: 10.3389/fpls.2023.1243828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Accepted: 09/11/2023] [Indexed: 10/14/2023]
17
Huang Y, Zhao X, Zheng Q, He X, Zhang MM, Ke S, Li Y, Zhang C, Ahmad S, Lan S, Liu ZJ. Genome-Wide Identification of TCP Gene Family in Dendrobium and Their Expression Patterns in Dendrobium chrysotoxum. Int J Mol Sci 2023;24:14320. [PMID: 37762622 PMCID: PMC10531990 DOI: 10.3390/ijms241814320] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 09/15/2023] [Accepted: 09/18/2023] [Indexed: 09/29/2023]  Open
18
Fan W, He ZS, Zhe M, Feng JQ, Zhang L, Huang Y, Liu F, Huang JL, Ya JD, Zhang SB, Yang JB, Zhu A, Li DZ. High-quality Cymbidium mannii genome and multifaceted regulation of crassulacean acid metabolism in epiphytes. PLANT COMMUNICATIONS 2023;4:100564. [PMID: 36809882 PMCID: PMC10504564 DOI: 10.1016/j.xplc.2023.100564] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Revised: 02/10/2023] [Accepted: 02/20/2023] [Indexed: 06/18/2023]
19
Bai Y, Ma Y, Chang Y, Zhang W, Deng Y, Zhang N, Zhang X, Fan K, Hu X, Wang S, Jiang Z, Hu T. Identification and transcriptome data analysis of ARF family genes in five Orchidaceae species. PLANT MOLECULAR BIOLOGY 2023;112:85-98. [PMID: 37103774 DOI: 10.1007/s11103-023-01354-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2022] [Accepted: 04/13/2023] [Indexed: 05/09/2023]
20
Sun WT, Cheng SC, Chao YT, Lin SY, Yang TT, Ho YP, Shih MC, Ko SS. Sugars and sucrose transporters in pollinia of Phalaenopsis aphrodite (Orchidaceae). JOURNAL OF EXPERIMENTAL BOTANY 2023;74:2556-2571. [PMID: 36656734 DOI: 10.1093/jxb/erad028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Accepted: 01/19/2023] [Indexed: 06/06/2023]
21
Jin C, Dong L, Wei C, Wani MA, Yang C, Li S, Li F. Creating novel ornamentals via new strategies in the era of genome editing. FRONTIERS IN PLANT SCIENCE 2023;14:1142866. [PMID: 37123857 PMCID: PMC10140431 DOI: 10.3389/fpls.2023.1142866] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Accepted: 03/27/2023] [Indexed: 05/03/2023]
22
Valoroso MC, Lucibelli F, Aceto S. Orchid NAC Transcription Factors: A Focused Analysis of CUPULIFORMIS Genes. Genes (Basel) 2022;13:genes13122293. [PMID: 36553560 PMCID: PMC9777940 DOI: 10.3390/genes13122293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 12/01/2022] [Accepted: 12/02/2022] [Indexed: 12/12/2022]  Open
23
Chen YY, Li C, Hsiao YY, Ho SY, Zhang ZB, Liao CC, Lee BR, Lin ST, Wu WL, Wang JS, Zhang D, Liu KW, Liu DK, Zhao XW, Li YY, Ke SJ, Zhou Z, Huang MZ, Wu YS, Peng DH, Lan SR, Chen HH, Liu ZJ, Wu WS, Tsai WC. OrchidBase 5.0: updates of the orchid genome knowledgebase. BMC PLANT BIOLOGY 2022;22:557. [PMID: 36456919 PMCID: PMC9717476 DOI: 10.1186/s12870-022-03955-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Accepted: 11/21/2022] [Indexed: 06/17/2023]
24
Ho BL, Chen JC, Huang TP, Fang SC. Protocorm-like-body extract of Phalaenopsis aphrodite combats watermelon fruit blotch disease. FRONTIERS IN PLANT SCIENCE 2022;13:1054586. [PMID: 36523623 PMCID: PMC9745142 DOI: 10.3389/fpls.2022.1054586] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Accepted: 11/10/2022] [Indexed: 06/17/2023]
25
Wang J, Li J, Lin W, Deng B, Lin L, Lv X, Hu Q, Liu K, Fatima M, He B, Qiu D, Ma X. Genome-wide identification and adaptive evolution of CesA/Csl superfamily among species with different life forms in Orchidaceae. FRONTIERS IN PLANT SCIENCE 2022;13:994679. [PMID: 36247544 PMCID: PMC9559377 DOI: 10.3389/fpls.2022.994679] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Accepted: 08/26/2022] [Indexed: 06/16/2023]
26
Zhang D, Zhao XW, Li YY, Ke SJ, Yin WL, Lan S, Liu ZJ. Advances and prospects of orchid research and industrialization. HORTICULTURE RESEARCH 2022;9:uhac220. [PMID: 36479582 PMCID: PMC9720451 DOI: 10.1093/hr/uhac220] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Accepted: 09/22/2022] [Indexed: 06/17/2023]
27
Song C, Wang Y, Manzoor MA, Mao D, Wei P, Cao Y, Zhu F. In-depth analysis of genomes and functional genomics of orchid using cutting-edge high-throughput sequencing. FRONTIERS IN PLANT SCIENCE 2022;13:1018029. [PMID: 36212315 PMCID: PMC9539832 DOI: 10.3389/fpls.2022.1018029] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Accepted: 09/05/2022] [Indexed: 06/01/2023]
28
Lim AH, Low ZJ, Shingate PN, Hong JH, Chong SC, Ng CCY, Liu W, Vaser R, Šikić M, Sung WKK, Nagarajan N, Tan P, Teh BT. Genome assembly and chemogenomic profiling of National Flower of Singapore Papilionanthe Miss Joaquim 'Agnes' reveals metabolic pathways regulating floral traits. Commun Biol 2022;5:967. [PMID: 36109650 PMCID: PMC9477820 DOI: 10.1038/s42003-022-03940-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2022] [Accepted: 09/02/2022] [Indexed: 11/22/2022]  Open
29
Piet Q, Droc G, Marande W, Sarah G, Bocs S, Klopp C, Bourge M, Siljak-Yakovlev S, Bouchez O, Lopez-Roques C, Lepers-Andrzejewski S, Bourgois L, Zucca J, Dron M, Besse P, Grisoni M, Jourda C, Charron C. A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly. PLANT COMMUNICATIONS 2022;3:100330. [PMID: 35617961 PMCID: PMC9482989 DOI: 10.1016/j.xplc.2022.100330] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2021] [Revised: 04/10/2022] [Accepted: 04/27/2022] [Indexed: 06/02/2023]
30
Jiang L, Lin M, Wang H, Song H, Zhang L, Huang Q, Chen R, Song C, Li G, Cao Y. Haplotype-resolved genome assembly of Bletilla striata (Thunb.) Reichb.f. to elucidate medicinal value. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022;111:1340-1353. [PMID: 35785503 DOI: 10.1111/tpj.15892] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Revised: 06/22/2022] [Accepted: 06/30/2022] [Indexed: 06/15/2023]
31
Wei YL, Jin JP, Liang D, Gao J, Li J, Xie Q, Lu CQ, Yang FX, Zhu GF. Genome-wide identification of Cymbidium sinense WRKY gene family and the importance of its Group III members in response to abiotic stress. FRONTIERS IN PLANT SCIENCE 2022;13:969010. [PMID: 35968117 PMCID: PMC9365948 DOI: 10.3389/fpls.2022.969010] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Accepted: 07/07/2022] [Indexed: 05/13/2023]
32
Developing Oligo Probes for Chromosomes Identification in Hemp (Cannabis sativa L.). PLANTS 2022;11:plants11151900. [PMID: 35893604 PMCID: PMC9332022 DOI: 10.3390/plants11151900] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Revised: 07/15/2022] [Accepted: 07/19/2022] [Indexed: 11/16/2022]
33
Sirohi U, Kumar M, Sharma VR, Teotia S, Singh D, Chaudhary V, Yadav MK. CRISPR/Cas9 System: A Potential Tool for Genetic Improvement in Floricultural Crops. Mol Biotechnol 2022;64:1303-1318. [PMID: 35751797 PMCID: PMC9244459 DOI: 10.1007/s12033-022-00523-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Accepted: 06/09/2022] [Indexed: 11/25/2022]
34
Wong DCJ, Peakall R. Orchid Phylotranscriptomics: The Prospects of Repurposing Multi-Tissue Transcriptomes for Phylogenetic Analysis and Beyond. FRONTIERS IN PLANT SCIENCE 2022;13:910362. [PMID: 35712597 PMCID: PMC9196242 DOI: 10.3389/fpls.2022.910362] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Accepted: 04/21/2022] [Indexed: 06/10/2023]
35
Cheng H, Xie X, Ren M, Yang S, Zhao X, Mahna N, Liu Y, Xu Y, Xiang Y, Chai H, Zheng L, Ge H, Jia R. Characterization of Three SEPALLATA-Like MADS-Box Genes Associated With Floral Development in Paphiopedilum henryanum (Orchidaceae). FRONTIERS IN PLANT SCIENCE 2022;13:916081. [PMID: 35693163 PMCID: PMC9178235 DOI: 10.3389/fpls.2022.916081] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/08/2022] [Accepted: 05/03/2022] [Indexed: 06/15/2023]
36
Li Y, Zhang B, Yu H. Molecular genetic insights into orchid reproductive development. JOURNAL OF EXPERIMENTAL BOTANY 2022;73:1841-1852. [PMID: 35104310 DOI: 10.1093/jxb/erac016] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Accepted: 01/17/2022] [Indexed: 06/14/2023]
37
Li MH, Liu KW, Li Z, Lu HC, Ye QL, Zhang D, Wang JY, Li YF, Zhong ZM, Liu X, Yu X, Liu DK, Tu XD, Liu B, Hao Y, Liao XY, Jiang YT, Sun WH, Chen J, Chen YQ, Ai Y, Zhai JW, Wu SS, Zhou Z, Hsiao YY, Wu WL, Chen YY, Lin YF, Hsu JL, Li CY, Wang ZW, Zhao X, Zhong WY, Ma XK, Ma L, Huang J, Chen GZ, Huang MZ, Huang L, Peng DH, Luo YB, Zou SQ, Chen SP, Lan S, Tsai WC, Van de Peer Y, Liu ZJ. Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy. NATURE PLANTS 2022;8:373-388. [PMID: 35449401 PMCID: PMC9023349 DOI: 10.1038/s41477-022-01127-9] [Citation(s) in RCA: 45] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Accepted: 03/09/2022] [Indexed: 05/12/2023]
38
Profiles of Cytokinins Metabolic Genes and Endogenous Cytokinins Dynamics during Shoot Multiplication In Vitro of Phalaenopsis. Int J Mol Sci 2022;23:ijms23073755. [PMID: 35409120 PMCID: PMC8998587 DOI: 10.3390/ijms23073755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 03/15/2022] [Accepted: 03/25/2022] [Indexed: 02/04/2023]  Open
39
Bae EK, An C, Kang MJ, Lee SA, Lee SJ, Kim KT, Park EJ. Chromosome-level genome assembly of the fully mycoheterotrophic orchid Gastrodia elata. G3 (BETHESDA, MD.) 2022;12:6511440. [PMID: 35100375 PMCID: PMC8896018 DOI: 10.1093/g3journal/jkab433] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/26/2021] [Accepted: 12/10/2021] [Indexed: 11/26/2022]
40
High-density genetic map and genome-wide association studies of aesthetic traits in Phalaenopsis orchids. Sci Rep 2022;12:3346. [PMID: 35228611 PMCID: PMC8885740 DOI: 10.1038/s41598-022-07318-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Accepted: 02/11/2022] [Indexed: 11/26/2022]  Open
41
Hsieh DK, Chuang SC, Chen CY, Chao YT, Lu MYJ, Lee MH, Shih MC. Comparative Genomics of Three Colletotrichum scovillei Strains and Genetic Analysis Revealed Genes Involved in Fungal Growth and Virulence on Chili Pepper. Front Microbiol 2022;13:818291. [PMID: 35154058 PMCID: PMC8828978 DOI: 10.3389/fmicb.2022.818291] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2021] [Accepted: 01/04/2022] [Indexed: 11/13/2022]  Open
42
Lu HC, Lam SH, Zhang D, Hsiao YY, Li BJ, Niu SC, Li CY, Lan S, Tsai WC, Liu ZJ. R2R3-MYB genes coordinate conical cell development and cuticular wax biosynthesis in Phalaenopsis aphrodite. PLANT PHYSIOLOGY 2022;188:318-331. [PMID: 34618124 PMCID: PMC8774817 DOI: 10.1093/plphys/kiab422] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Accepted: 08/03/2021] [Indexed: 06/02/2023]
43
Yang F, Gao J, Wei Y, Ren R, Zhang G, Lu C, Jin J, Ai Y, Wang Y, Chen L, Ahmad S, Zhang D, Sun W, Tsai W, Liu Z, Zhu G. The genome of Cymbidium sinense revealed the evolution of orchid traits. PLANT BIOTECHNOLOGY JOURNAL 2021;19:2501-2516. [PMID: 34342129 PMCID: PMC8633513 DOI: 10.1111/pbi.13676] [Citation(s) in RCA: 49] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/09/2021] [Revised: 07/08/2021] [Accepted: 07/23/2021] [Indexed: 05/04/2023]
44
Ai Y, Li Z, Sun WH, Chen J, Zhang D, Ma L, Zhang QH, Chen MK, Zheng QD, Liu JF, Jiang YT, Li BJ, Liu X, Xu XY, Yu X, Zheng Y, Liao XY, Zhou Z, Wang JY, Wang ZW, Xie TX, Ma SH, Zhou J, Ke YJ, Zhou YZ, Lu HC, Liu KW, Yang FX, Zhu GF, Huang L, Peng DH, Chen SP, Lan S, Van de Peer Y, Liu ZJ. The Cymbidium genome reveals the evolution of unique morphological traits. HORTICULTURE RESEARCH 2021;8:255. [PMID: 34848682 PMCID: PMC8633000 DOI: 10.1038/s41438-021-00683-z] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Revised: 06/22/2021] [Accepted: 07/30/2021] [Indexed: 05/04/2023]
45
Chung O, Kim J, Bolser D, Kim HM, Jun JH, Choi JP, Jang HD, Cho YS, Bhak J, Kwak M. A chromosome-scale genome assembly and annotation of the spring orchid (Cymbidium goeringii). Mol Ecol Resour 2021;22:1168-1177. [PMID: 34687590 DOI: 10.1111/1755-0998.13537] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Revised: 07/23/2021] [Accepted: 08/23/2021] [Indexed: 12/13/2022]
46
Zhang W, Zhang G, Zeng P, Zhang Y, Hu H, Liu Z, Cai J. Genome sequence of Apostasia ramifera provides insights into the adaptive evolution in orchids. BMC Genomics 2021;22:536. [PMID: 34256691 PMCID: PMC8278605 DOI: 10.1186/s12864-021-07852-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Accepted: 06/23/2021] [Indexed: 01/01/2023]  Open
47
Zheng T, Li P, Li L, Zhang Q. Research advances in and prospects of ornamental plant genomics. HORTICULTURE RESEARCH 2021;8:65. [PMID: 33790259 PMCID: PMC8012582 DOI: 10.1038/s41438-021-00499-x] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/08/2020] [Revised: 01/04/2021] [Accepted: 01/11/2021] [Indexed: 05/14/2023]
48
Serna-Sánchez MA, Pérez-Escobar OA, Bogarín D, Torres-Jimenez MF, Alvarez-Yela AC, Arcila-Galvis JE, Hall CF, de Barros F, Pinheiro F, Dodsworth S, Chase MW, Antonelli A, Arias T. Plastid phylogenomics resolves ambiguous relationships within the orchid family and provides a solid timeframe for biogeography and macroevolution. Sci Rep 2021;11:6858. [PMID: 33767214 PMCID: PMC7994851 DOI: 10.1038/s41598-021-83664-5] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Accepted: 12/30/2020] [Indexed: 11/29/2022]  Open
49
Giovannini A, Laura M, Nesi B, Savona M, Cardi T. Genes and genome editing tools for breeding desirable phenotypes in ornamentals. PLANT CELL REPORTS 2021;40:461-478. [PMID: 33388891 PMCID: PMC7778708 DOI: 10.1007/s00299-020-02632-x] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2020] [Accepted: 10/27/2020] [Indexed: 05/05/2023]
50
Peakall R, Wong DCJ, Phillips RD, Ruibal M, Eyles R, Rodriguez-Delgado C, Linde CC. A multitiered sequence capture strategy spanning broad evolutionary scales: Application for phylogenetic and phylogeographic studies of orchids. Mol Ecol Resour 2021;21:1118-1140. [PMID: 33453072 DOI: 10.1111/1755-0998.13327] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2020] [Revised: 12/22/2020] [Accepted: 01/05/2021] [Indexed: 11/30/2022]
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