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Liu T, Huang S, Li R, Gao P, Li W, Lu H, Song Y, Rong J. Dual and Multi-Target Cone-Beam X-ray Luminescence Computed Tomography Based on the DeepCB-XLCT Network. Bioengineering (Basel) 2024; 11:874. [PMID: 39329616 PMCID: PMC11428951 DOI: 10.3390/bioengineering11090874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2024] [Revised: 08/24/2024] [Accepted: 08/27/2024] [Indexed: 09/28/2024] Open
Abstract
BACKGROUND AND OBJECTIVE Emerging as a hybrid imaging modality, cone-beam X-ray luminescence computed tomography (CB-XLCT) has been developed using X-ray-excitable nanoparticles. In contrast to conventional bio-optical imaging techniques like bioluminescence tomography (BLT) and fluorescence molecular tomography (FMT), CB-XLCT offers the advantage of greater imaging depth while significantly reducing interference from autofluorescence and background fluorescence, owing to its utilization of X-ray-excited nanoparticles. However, due to the intricate excitation process and extensive light scattering within biological tissues, the inverse problem of CB-XLCT is fundamentally ill-conditioned. METHODS An end-to-end three-dimensional deep encoder-decoder network, termed DeepCB-XLCT, is introduced to improve the quality of CB-XLCT reconstructions. This network directly establishes a nonlinear mapping between the distribution of internal X-ray-excitable nanoparticles and the corresponding boundary fluorescent signals. To improve the fidelity of target shape restoration, the structural similarity loss (SSIM) was incorporated into the objective function of the DeepCB-XLCT network. Additionally, a loss term specifically for target regions was introduced to improve the network's emphasis on the areas of interest. As a result, the inaccuracies in reconstruction caused by the simplified linear model used in conventional methods can be effectively minimized by the proposed DeepCB-XLCT method. RESULTS AND CONCLUSIONS Numerical simulations, phantom experiments, and in vivo experiments with two targets were performed, revealing that the DeepCB-XLCT network enhances reconstruction accuracy regarding contrast-to-noise ratio and shape similarity when compared to traditional methods. In addition, the findings from the XLCT tomographic images involving three targets demonstrate its potential for multi-target CB-XLCT imaging.
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Affiliation(s)
- Tianshuai Liu
- Biomedical Engineering Department, Fourth Military Medical University, Xi’an 710032, China; (T.L.); (S.H.); (R.L.); (P.G.); (W.L.)
- Shaanxi Provincial Key Laboratory of Bioelectromagnetic Detection and Intelligent Perception, Xi’an 710032, China
| | - Shien Huang
- Biomedical Engineering Department, Fourth Military Medical University, Xi’an 710032, China; (T.L.); (S.H.); (R.L.); (P.G.); (W.L.)
- School of Software Engineering, Xi’an Jiaotong University, Xi’an 710049, China
| | - Ruijing Li
- Biomedical Engineering Department, Fourth Military Medical University, Xi’an 710032, China; (T.L.); (S.H.); (R.L.); (P.G.); (W.L.)
- Shaanxi Provincial Key Laboratory of Bioelectromagnetic Detection and Intelligent Perception, Xi’an 710032, China
| | - Peng Gao
- Biomedical Engineering Department, Fourth Military Medical University, Xi’an 710032, China; (T.L.); (S.H.); (R.L.); (P.G.); (W.L.)
- Shaanxi Provincial Key Laboratory of Bioelectromagnetic Detection and Intelligent Perception, Xi’an 710032, China
| | - Wangyang Li
- Biomedical Engineering Department, Fourth Military Medical University, Xi’an 710032, China; (T.L.); (S.H.); (R.L.); (P.G.); (W.L.)
- Shaanxi Provincial Key Laboratory of Bioelectromagnetic Detection and Intelligent Perception, Xi’an 710032, China
| | - Hongbing Lu
- Biomedical Engineering Department, Fourth Military Medical University, Xi’an 710032, China; (T.L.); (S.H.); (R.L.); (P.G.); (W.L.)
- Shaanxi Provincial Key Laboratory of Bioelectromagnetic Detection and Intelligent Perception, Xi’an 710032, China
| | - Yonghong Song
- School of Software Engineering, Xi’an Jiaotong University, Xi’an 710049, China
| | - Junyan Rong
- Biomedical Engineering Department, Fourth Military Medical University, Xi’an 710032, China; (T.L.); (S.H.); (R.L.); (P.G.); (W.L.)
- Shaanxi Provincial Key Laboratory of Bioelectromagnetic Detection and Intelligent Perception, Xi’an 710032, China
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Fang Y, Zhang Y, Lun MC, Li C. Superfast Scan of Focused X-Ray Luminescence Computed Tomography Imaging. IEEE ACCESS : PRACTICAL INNOVATIONS, OPEN SOLUTIONS 2023; 11:134183-134190. [PMID: 38919730 PMCID: PMC11198969 DOI: 10.1109/access.2023.3336615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/27/2024]
Abstract
X-ray luminescence computed tomography (XLCT) is a hybrid molecular imaging modality having the high spatial resolution of x-ray imaging and high measurement sensitivity of optical imaging. Narrow x-ray beam based XLCT imaging has shown promise for high spatial resolution imaging of luminescent targets in deep tissues, but the slow acquisition speed limits its applications. In this work, we have introduced a superfast XLCT scan scheme based on the photon counter detector and a fly-scanning method. The new scan scheme is compared with three other scan methods. We have also designed and built a single-pixel x-ray detector to detect object boundaries automatically. With the detector, we can perform the parallel beam CT imaging with the XLCT imaging simultaneously. We have built the prototype XLCT imaging system to verify the proposed scan scheme. A phantom embedded with a set of four side-by-side cylindrical targets was scanned. With the proposed superfast scan scheme, we have achieved 43 seconds per transverse scan, which is 28.6 times faster than before with slightly better XLCT image quality. The superfast scan allows us to perform 3D pencil beam XLCT imaging in the future.
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Affiliation(s)
- Yile Fang
- Department of Bioengineering, University of California, Merced, Merced, CA 95343, USA
| | - Yibing Zhang
- Department of Bioengineering, University of California, Merced, Merced, CA 95343, USA
| | - Michael C Lun
- Department of Bioengineering, University of California, Merced, Merced, CA 95343, USA
| | - Changqing Li
- Department of Electrical Engineering, University of California, Merced, Merced, CA 95343, USA
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Coutinho Almeida-da-Silva CL, Cabido LF, Chin WC, Wang G, Ojcius DM, Li C. Interactions between silica and titanium nanoparticles and oral and gastrointestinal epithelia: Consequences for inflammatory diseases and cancer. Heliyon 2023; 9:e14022. [PMID: 36938417 PMCID: PMC10020104 DOI: 10.1016/j.heliyon.2023.e14022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Revised: 02/09/2023] [Accepted: 02/20/2023] [Indexed: 03/21/2023] Open
Abstract
Engineered nanoparticles (NPs) composed of elements such as silica and titanium, smaller than 100 nm in diameter and their aggregates, are found in consumer products such as cosmetics, food, antimicrobials and drug delivery systems, and oral health products such as toothpaste and dental materials. They may also interact accidently with epithelial tissues in the intestines and oral cavity, where they can aggregate into larger particles and induce inflammation through pathways such as inflammasome activation. Persistent inflammation can lead to precancerous lesions. Both the particles and lesions are difficult to detect in biopsies, especially in clinical settings that screen large numbers of patients. As diagnosis of early stages of disease can be lifesaving, there is growing interest in better understanding interactions between NPs and epithelium and developing rapid imaging techniques that could detect foreign particles and markers of inflammation in epithelial tissues. NPs can be labelled with fluorescence or radioactive isotopes, but it is challenging to detect unlabeled NPs with conventional imaging techniques. Different current imaging techniques such as synchrotron radiation X-ray fluorescence spectroscopy are discussed here. Improvements in imaging techniques, coupled with the use of machine learning tools, are needed before diagnosis of particles in biopsies by automated imaging could move usefully into the clinic.
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Affiliation(s)
| | - Leticia Ferreira Cabido
- Department of Oral and Maxillofacial Surgery, University of the Pacific, San Francisco, CA, USA
| | - Wei-Chun Chin
- Department of Bioengineering, University of California, Merced, CA, USA
| | - Ge Wang
- Department of Biomedical Engineering, Biomedical Imaging Center, Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, NY 12180, USA
| | - David M Ojcius
- Department of Biomedical Sciences, University of the Pacific, San Francisco, CA, USA
| | - Changqing Li
- Department of Bioengineering, University of California, Merced, CA, USA
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Zhang Y, Fang Y, Abbaraju V, Bhattacharya S, Anker JN, Wang G, Li C. Oxygenation imaging in deep tissue with X-Ray luminescence computed tomography (XLCT). PROCEEDINGS OF SPIE--THE INTERNATIONAL SOCIETY FOR OPTICAL ENGINEERING 2023; 12468:124680I. [PMID: 38957374 PMCID: PMC11218916 DOI: 10.1117/12.2654446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/04/2024]
Abstract
Oxygenation concentration of tissue is an important factor in culturing stem cells and in studying the therapy response of cancer cells. The hypoxia bone marrow is the site to harbor cancer cells. Thus, direct high-resolution measurements of molecular 𝑂2 would provide powerful means of monitoring cultured stem cells and therapied cancer cells. We proposed an imaging approach to measure oxygenation concentration in deep tissues, based on the XLCT, with combined strengths of high chemical sensitivity and high spatial resolution. We have developed different biosensing films for oxygenation measurements and tested these films with X-ray luminescent experiments. We have also performed phantom experiments with multiple targets to validate the XLCT imaging system with measurements at two channels.
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Affiliation(s)
- Yibing Zhang
- Department of Bioengineering, University of California, Merced, Merced, CA 95343, USA
| | - Yile Fang
- Department of Bioengineering, University of California, Merced, Merced, CA 95343, USA
| | - Vigjna Abbaraju
- Department of Chemistry, Clemson University, Clemson, SC 29634, USA
| | | | - Jeffrey N. Anker
- Department of Chemistry, Clemson University, Clemson, SC 29634, USA
- Department of Bioengineering, Center for Optical Materials Science and Engineering Technology (COMSET), and Institute of Environment Toxicology (CU-ENTOX), Clemson University, Clemson, SC 29634, USA
| | - Ge Wang
- Department of Biomedical Engineering, Biomedical Imaging Center, Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, NY 12180, USA
| | - Changqing Li
- Department of Bioengineering, University of California, Merced, Merced, CA 95343, USA
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Fast and Inexpensive Separation of Bright Phosphor Particles from Commercial Sources by Gravitational and Centrifugal Sedimentation for Deep Tissue X-ray Luminescence Imaging. PHOTONICS 2022. [DOI: 10.3390/photonics9050347] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
X-ray luminescence tomography (XLT) detects X-ray scintillators contrast agents using a focused or collimated X-ray beam to provide high spatial resolution excitation through thick tissue. The approach requires bright nanophosphors that are either synthesized or purchased. However, currently available commercial nanophosphors are mostly composed of a polydisperse mixture of several micro- to nano-sized particles that are unsuitable for biomedical imaging applications because of their size and aggregated form. Here, we demonstrate a fast and robust method to obtain uniform nano to submicron phosphor particles from a commercial source of polydisperse Eu- and Tb-doped Gd2O2S particles by separating the smaller particles present using gravitational and centrifugal sedimentation. In contrast to ball milling for 15–60 min, which drastically degraded the particles’ brightness while reducing their size, our sedimentation method enabled the extraction of comparatively bright nanophosphors (≈100–300 nm in size) with a luminescence intensity of ≈10–20% of the several micron particles in the sample. Moreover, if scale up for higher yielding is required, the sedimentation process can be accelerated using fixed-angle and/or swinging bucket rotating centrifugation. Finally, after separation and characterization, nano and submicron phosphors were suspended and imaged through 5 mm thick porcine tissue using our in-house-built scanning X-ray induced luminescence chemical imaging (XELCI) system.
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Fang Y, Lun MC, Zhang Y, Anker JN, Wang G, Li C. Super-Fast Three-Dimensional Focused X-ray Luminescence Computed Tomography with a Gated Photon Counter. PROCEEDINGS OF SPIE--THE INTERNATIONAL SOCIETY FOR OPTICAL ENGINEERING 2022; 12036:120360K. [PMID: 38919737 PMCID: PMC11198976 DOI: 10.1117/12.2613157] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/27/2024]
Abstract
X-ray luminescence computed tomography (XLCT) is a hybrid molecular imaging modality combining the merits of both x-ray imaging (high spatial resolution) and optical imaging (high sensitivity to tracer nanophosphors). Narrow x-ray beam based XLCT imaging has shown promise for high spatial resolution imaging, but the slow acquisition speed limits its applications for in vivo imaging. We introduced a continuous scanning scheme to replace the selective excitation scheme to improve imaging speed in a previous study. Under the continuous scanning scheme, the main factor that limits the scanning speed is the data acquisition time at each interval position. In this work, we have used a gated photon counter (SR400, Stanford Research Systems) to replace the high-speed oscilloscope (MDO3104, Tektronix) to acquire measurement data. The gated photon counter only counts the photon peaks in each measurement interval, while the oscilloscope records the entire waveform including both background noise data and photon peak data. The photon counter records much less data without losing any relevant information, which makes it ideal for super-fast three-dimensional (3D) imaging. We have built prototype XLCT imaging systems of both types and performed both single target and multiple target phantom experiments in 3D. The results have verified the feasibility of our proposed photon counter based system and good 3D imaging capabilities of XLCT within a reasonable time, yielding a 14 times faster scanning time compared with the oscilloscope based XLCT system. Now, the total scan time is reduced to 27 seconds per transverse section.
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Affiliation(s)
- Yile Fang
- Department of Bioengineering, University of California, Merced, Merced, CA 95343, USA
| | - Michael C. Lun
- Department of Bioengineering, University of California, Merced, Merced, CA 95343, USA
| | - Yibing Zhang
- Department of Bioengineering, University of California, Merced, Merced, CA 95343, USA
| | - Jeffrey N. Anker
- Department of Chemistry, Clemson University, Clemson, SC 29634, USA
- Department of Bioengineering, Center for Optical Materials Science and Engineering Technology (COMSET), and Institute of Environment Toxicology (CU-ENTOX), Clemson University, Clemson, SC 29634, USA
| | - Ge Wang
- Department of Biomedical Engineering, Biomedical Imaging Center, Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, NY 12180, USA
| | - Changqing Li
- Department of Bioengineering, University of California, Merced, Merced, CA 95343, USA
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Romero IO, Fang Y, Li C. Correlation between X-ray tube current exposure time and X-ray photon number in GATE. JOURNAL OF X-RAY SCIENCE AND TECHNOLOGY 2022; 30:667-675. [PMID: 35466921 PMCID: PMC10754355 DOI: 10.3233/xst-221126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
BACKGROUND X-ray image quality relies heavily on the emitted X-ray photon number which depends on X-ray tube current and exposure time. To accurately estimate the absorbed dose in an imaging protocol, it is better to simulate the X-ray imaging with a Monte Carlo platform such as GATE (Geant4 Application for Tomographic Emission). Although input of GATE is the X-ray photon number of the simulated X-ray tube, it lacks a good way to setup the photon number for a desired X-ray tube current setting. OBJECTIVE To provide a method to correlate the experimental X-ray tube current exposure time and the X-ray photon number in GATE. METHODS The accumulated radiation dose of a micro-computed tomography (CT) X-ray tube was recorded at different current exposure times with a general-purpose ion chamber. GATE was used to model the experimental microCT imaging system and calculate the total absorbed dose (cGy) in the sensitive volume of the ion chamber with different X-ray photon numbers. Linear regression models are used to establish a correlation between the estimated X-ray photon number and the X-ray tube settings. At first, one model establishes the relationship between the experimentally measured dose and the X-ray tube setting. Then, another model establishes a relationship between the simulated dose and the X-ray number in GATE. At last, by correlating these two models, a regression model to estimate the X-ray output number from an experimental X-ray tube setting (mAs) is obtained. RESULTS For a typical micro-CT scan, the X-ray tube is operated at 50 kVp and 0.5 mA for a 500 ms exposure time per projection (0.25 mAs). For these X-ray imaging parameters, the X-ray number per projection is estimated to be 3.613×106 with 1.0 mm Al filter. CONCLUSION The findings of this work provide an approach to correlate the experimental X-ray tube current exposure time to the X-ray photon number in the GATE simulation of the X-ray tube to more accurately determine radiation dose for an imaging protocol.
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Affiliation(s)
- Ignacio O. Romero
- Department of Bioengineering, University of California, Merced, Merced, CA, USA
| | - Yile Fang
- Department of Bioengineering, University of California, Merced, Merced, CA, USA
| | - Changqing Li
- Department of Bioengineering, University of California, Merced, Merced, CA, USA
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Lun MC, Ranasinghe M, Arifuzzaman M, Fang Y, Guo Y, Anker JN, Li C. Contrast agents for x-ray luminescence computed tomography. APPLIED OPTICS 2021; 60:6769-6775. [PMID: 34613157 PMCID: PMC10775909 DOI: 10.1364/ao.431080] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Accepted: 07/06/2021] [Indexed: 06/13/2023]
Abstract
Imaging probes are an important consideration for any type of contrast agent-based imaging method. X-ray luminescence imaging (XLI) and x-ray luminescence computed tomography (XLCT) are both contrast agent-based imaging methods that employ x-ray excitable scintillating imaging probes that emit light to be measured for optical imaging. In this work, we compared the performance of several select imaging probes, both commercial and self-synthesized, for application in XLI/XLCT imaging. Commercially available cadmium telluride quantum dots (CdTe QDs) and europium-doped gadolinium oxysulfide (GOS:Eu) microphosphor as well as synthesized NaGdF4 nanophosphors doped with either europium or terbium were compared through their x-ray luminescence emission spectra, luminescence intensity, and also by performing XLCT scans using phantoms embedded with each of the imaging probes. Each imaging probe displayed a unique emission spectrum that was ideal for deep-tissue optical imaging. In terms of luminescence intensity, due to the large particle size, GOS:Eu had the brightest emission, followed by NaGdF4:Tb, NaGdF4:Eu, and finally the CdTe QDs. Lastly, XLCT scans showed that each imaging probe could be reconstructed with good shape and location accuracy.
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Affiliation(s)
- Michael C. Lun
- Department of Bioengineering, University of California, Merced, California 95343, USA
| | | | | | - Yile Fang
- Department of Bioengineering, University of California, Merced, California 95343, USA
| | - Yiping Guo
- Quantitative and Systems Biology Program, University of California, Merced, Merced, California 95343, USA
| | - Jeffrey N. Anker
- Department of Chemistry, Clemson University, Clemson, South Carolina 29634, USA
- Center for Optical Materials Science and Engineering, Institute of Environmental Toxicology, Department of Bioengineering, Clemson University, Clemson, South Carolina 29634, USA
| | - Changqing Li
- Department of Bioengineering, University of California, Merced, California 95343, USA
- Quantitative and Systems Biology Program, University of California, Merced, Merced, California 95343, USA
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