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Zhang XM, Zheng X, Li XL, Meng FQ, Yin SS. A method with ultra-high angular resolution for X-ray diffraction experiments. JOURNAL OF SYNCHROTRON RADIATION 2024; 31:35-41. [PMID: 38084592 PMCID: PMC10833433 DOI: 10.1107/s160057752300961x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Accepted: 11/03/2023] [Indexed: 01/09/2024]
Abstract
In X-ray diffraction measurements, the angular resolution has a detection limit due to the receiving size of the detector. In many cases this detection limit is too large and must be breached to obtain the desired information. A novel method is proposed here by making the detector simultaneously measuring and moving. Using the deconvolution algorithm to remove the convolution effect, the pixel size limitation is finally broken. The algorithm used is not a common one, and suppresses signals at high frequencies, ensuring the reliability of the peak shape after restoration. The feasibility of this method is verified by successfully measuring the crystal truncation rod signal of SrTiO3 single crystal, and the resolution is nearly ten times higher than that of a single pixel. Moreover, this method greatly reduces the noise and improves the signal-to-noise ratio.
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Affiliation(s)
- X. M. Zhang
- Institute of Advanced Science Facilities, Shenzhen 518107, People’s Republic of China
| | - X. Zheng
- Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201204, People’s Republic of China
| | - X. L. Li
- Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201204, People’s Republic of China
| | - F. Q. Meng
- Institute of Advanced Science Facilities, Shenzhen 518107, People’s Republic of China
- Sun Yat-sen University, Guangzhou 510275, People’s Republic of China
| | - S. S. Yin
- ShanghaiTech University, Shanghai 201210, People’s Republic of China
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Massimi L, Suaris T, Hagen CK, Endrizzi M, Munro PRT, Havariyoun G, Hawker PMS, Smit B, Astolfo A, Larkin OJ, Waltham RM, Shah Z, Duffy SW, Nelan RL, Peel A, Jones JL, Haig IG, Bate D, Olivo A. Volumetric High-Resolution X-Ray Phase-Contrast Virtual Histology of Breast Specimens With a Compact Laboratory System. IEEE TRANSACTIONS ON MEDICAL IMAGING 2022; 41:1188-1195. [PMID: 34941505 PMCID: PMC7612751 DOI: 10.1109/tmi.2021.3137964] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The assessment of margin involvement is a fundamental task in breast conserving surgery to prevent recurrences and reoperations. It is usually performed through histology, which makes the process time consuming and can prevent the complete volumetric analysis of large specimens. X-ray phase contrast tomography combines high resolution, sufficient penetration depth and high soft tissue contrast, and can therefore provide a potential solution to this problem. In this work, we used a high-resolution implementation of the edge illumination X-ray phase contrast tomography based on "pixel-skipping" X-ray masks and sample dithering, to provide high definition virtual slices of breast specimens. The scanner was originally designed for intra-operative applications in which short scanning times were prioritised over spatial resolution; however, thanks to the versatility of edge illumination, high-resolution capabilities can be obtained with the same system simply by swapping x-ray masks without this imposing a reduction in the available field of view. This makes possible an improved visibility of fine tissue strands, enabling a direct comparison of selected CT slices with histology, and providing a tool to identify suspect features in large specimens before slicing. Combined with our previous results on fast specimen scanning, this works paves the way for the design of a multi-resolution EI scanner providing intra-operative capabilities as well as serving as a digital pathology system.
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Olivo A. Edge-illumination x-ray phase-contrast imaging. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2021; 33:363002. [PMID: 34167096 PMCID: PMC8276004 DOI: 10.1088/1361-648x/ac0e6e] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Revised: 06/07/2021] [Accepted: 06/24/2021] [Indexed: 05/08/2023]
Abstract
Although early demonstration dates back to the mid-sixties, x-ray phase-contrast imaging (XPCI) became hugely popular in the mid-90s, thanks to the advent of 3rd generation synchrotron facilities. Its ability to reveal object features that had so far been considered invisible to x-rays immediately suggested great potential for applications across the life and the physical sciences, and an increasing number of groups worldwide started experimenting with it. At that time, it looked like a synchrotron facility was strictly necessary to perform XPCI with some degree of efficiency-the only alternative being micro-focal sources, the limited flux of which imposed excessively long exposure times. However, new approaches emerged in the mid-00s that overcame this limitation, and allowed XPCI implementations with conventional, non-micro-focal x-ray sources. One of these approaches showing particular promise for 'real-world' applications is edge-illumination XPCI: this article describes the key steps in its evolution in the context of contemporary developments in XPCI research, and presents its current state-of-the-art, especially in terms of transition towards practical applications.
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Affiliation(s)
- Alessandro Olivo
- Department of Medical Physics and Biomedical Engineering, UCL, London, United Kingdom
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Cai D, Li Z, Chen SL. In vivo deconvolution acoustic-resolution photoacoustic microscopy in three dimensions. BIOMEDICAL OPTICS EXPRESS 2016; 7:369-80. [PMID: 26977346 PMCID: PMC4771455 DOI: 10.1364/boe.7.000369] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2015] [Revised: 12/12/2015] [Accepted: 01/03/2016] [Indexed: 05/12/2023]
Abstract
Acoustic-resolution photoacoustic microscopy (ARPAM) provides a spatial resolution on the order of tens of micrometers, and is becoming an essential tool for imaging fine structures, such as the subcutaneous microvasculature. High lateral resolution of ARPAM is achieved using high numerical aperture (NA) of acoustic transducer; however, the depth of focus and working distance will be deteriorated correspondingly, thus sacrificing the imaging range and accessible depth. The axial resolution of ARPAM is limited by the transducer's bandwidth. In this work, we develop deconvolution ARPAM (D-ARPAM) in three dimensions that can improve the lateral resolution by 1.8 and 3.7 times and the axial resolution by 1.7 and 2.7 times, depending on the adopted criteria, using a 20-MHz focused transducer without physically increasing its NA and bandwidth. The resolution enhancement in three dimensions by D-ARPAM is also demonstrated by in vivo imaging of the microvasculature of a chick embryo. The proposed D-ARPAM has potential for biomedical imaging that simultaneously requires high spatial resolution, extended imaging range, and long accessible depth.
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Marenzana M, Hagen CK, Das Neves Borges P, Endrizzi M, Szafraniec MB, Ignatyev K, Olivo A. Visualization of small lesions in rat cartilage by means of laboratory-based x-ray phase contrast imaging. Phys Med Biol 2012; 57:8173-84. [PMID: 23174992 DOI: 10.1088/0031-9155/57/24/8173] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Being able to quantitatively assess articular cartilage in three-dimensions (3D) in small rodent animal models, with a simple laboratory set-up, would prove extremely important for the development of pre-clinical research focusing on cartilage pathologies such as osteoarthritis (OA). These models are becoming essential tools for the development of new drugs for OA, a disease affecting up to 1/3 of the population older than 50 years for which there is no cure except prosthetic surgery. However, due to limitations in imaging technology, high-throughput 3D structural imaging has not been achievable in small rodent models, thereby limiting their translational potential and their efficiency as research tools. We show that a simple laboratory system based on coded-aperture x-ray phase contrast imaging (CAXPCi) can correctly visualize the cartilage layer in slices of an excised rat tibia imaged both in air and in saline solution. Moreover, we show that small, surgically induced lesions are also correctly detected by the CAXPCi system, and we support this finding with histopathology examination. Following these successful proof-of-concept results in rat cartilage, we expect that an upgrade of the system to higher resolutions (currently underway) will enable extending the method to the imaging of mouse cartilage as well. From a technological standpoint, by showing the capability of the system to detect cartilage also in water, we demonstrate phase sensitivity comparable to other lab-based phase methods (e.g. grating interferometry). In conclusion, CAXPCi holds a strong potential for being adopted as a routine laboratory tool for non-destructive, high throughput assessment of 3D structural changes in murine articular cartilage, with a possible impact in the field similar to the revolution that conventional microCT brought into bone research.
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Ignatyev K, Munro PRT, Speller RD, Olivo A. Effects of signal diffusion on x-ray phase contrast images. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2011; 82:073702. [PMID: 21806184 DOI: 10.1063/1.3606442] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
We discuss the problem of signal diffusion among neighbouring pixels in x-ray phase contrast imaging (XPCi) specifically for coded-aperture (CA) XPCi, but many of the discussed observations are directly transferable to other XPCi modalities. CA XPCi exploits the principle of pixel edge illumination by means of two CA masks. The first mask, placed in contact with the detector, creates insensitive regions between adjacent pixels; the second one, placed immediately before the sample, creates individual beams impinging on the boundaries between sensitive and insensitive regions on the detector, as created by the detector mask. In this way, edge illumination is achieved for all pixels of an area detector illuminated by a divergent and polychromatic beam generated by a conventional source. As the detector mask redefines the resolution properties of the detector, sample dithering can be used to effectively increase the system spatial resolution, without having to apply any post-processing procedure (e.g., deconvolution). This however creates artifacts in the form of secondary fringes (which have nothing to do with phase-related secondary fringes) if there is signal diffusion between adjacent pixels. In non-dithered images, signal diffusion between adjacent pixels causes a reduction in image contrast. This effect is investigated both theoretically and experimentally, and its direct implications on image quality are discussed. The interplay with the sample positioning with respect to the detector pixel matrix, which also has an effect on the obtained image contrast, is also discussed.
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Affiliation(s)
- K Ignatyev
- Department of Medical Physics and Bioengineering, UCL, Malet Place, Gower Street, London WC1E 6BT, United Kingdom
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Olivo A, Speller RD. Deconvolution of x-ray phase contrast images as a way to retrieve phase information lost due to insufficient resolution. Phys Med Biol 2009; 54:N347-54. [DOI: 10.1088/0031-9155/54/15/n02] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Price BD, Esbrand CJ, Olivo A, Gibson AP, Hebden JC, Speller RD, Royle GJ. Assessing the validity of modulation transfer function evaluation techniques with application to small area and scanned digital detectors. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2008; 79:113103. [PMID: 19045885 DOI: 10.1063/1.3020696] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
A novel prototype step and shoot x-ray system, the intelligent imaging system (I-Imas), has been developed in the UCL Radiation Physics laboratories. The system uses collimators to split the beam into two: the first, "scout" beam, strongly attenuated, identifies regions of interest in the image. This information is then fed back to the system so that the intensity of the second beam is modulated to optimize the dose distribution--i.e., "interesting" regions of the sample receive a higher dose, whereas other regions receive a lower one. Such systems may be capable of improved diagnostic capability at the same overall patient dose levels as typical when using large area digital plates. This acquisition mode means that large overall images are obtained by aligning many smaller images. This paper investigates the effects that this acquisition modality has on the overall spatial resolution of the system. We review different modulation transfer function (MTF) evaluation techniques and those shown to be optimal are used in the investigation of two considerations key to such a system: (i) whether there is a minimum size sensor whose MTF can accurately be determined using these techniques and (ii) whether the MTF of the large overall image differs significantly from those of the many constituent images. As the use of step and shoot systems is becoming more and more widespread, both are important considerations. We found that, for a fixed pixel pitch, the MTF is determined marginally less accurately the smaller the sensor area, with the perceived resolution varying by up to 0.1 lp/mm. It was also found that use of such a step and shoot technique does cause a very small overall degradation in resolution. The resolution of overall images was calculated to be 0.1 lp/mm lower than that of the individual images acquired.
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Affiliation(s)
- B D Price
- Department of Medical Physics and Bioengineering, University College London, London, United Kingdom.
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Olivo A, Speller R. Image formation principles in coded-aperture based x-ray phase contrast imaging. Phys Med Biol 2008; 53:6461-74. [PMID: 18941282 DOI: 10.1088/0031-9155/53/22/012] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
A novel x-ray phase contrast imaging technique based on coded apertures was recently developed at University College London. This technique removes most limitations of previous phase contrast methods and provides image improvements comparable to those obtained with synchrotron radiation with conventional x-ray sources. Unlike other phase contrast approaches, the technique does not impose restrictive wavelength and/or angular filtering on the beam emitted by the source, meaning that the beam can be exploited in full thus minimizing exposure times. As a consequence, the method provides, for the first time, a concrete opportunity to transfer x-ray phase contrast imaging into real medical applications. This paper discusses the image formation principles, analyses the shape and nature of the phase contrast profiles obtained and draws a significant conclusion on the role of convolution integrals in the acquisition of phase contrast patterns, applicable also to other phase contrast imaging approaches.
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Affiliation(s)
- A Olivo
- Department of Medical Physics and Bioengineering, University College London, Malet Place, Gower Street, London WC1E 6BT, UK.
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Koutalonis M, Delis H, Spyrou G, Costaridou L, Tzanakos G, Panayiotakis G. Monte Carlo studies on the influence of focal spot size and intensity distribution on spatial resolution in magnification mammography. Phys Med Biol 2008; 53:1369-84. [DOI: 10.1088/0031-9155/53/5/013] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Olivo A, Speller R. Experimental validation of a simple model capable of predicting the phase contrast imaging capabilities of any x-ray imaging system. Phys Med Biol 2006; 51:3015-30. [PMID: 16757859 DOI: 10.1088/0031-9155/51/12/001] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Phase contrast (PC) imaging is one of the most exciting emerging x-ray imaging techniques, with the potential of removing some of the main limitations of conventional radiology. After extensive experimentation carried out particularly at synchrotron radiation (SR) facilities, the scientific community agrees that it is now time to translate these ideas towards the first clinical implementations. In this framework, a complete model, based on Fresnel/Kirchoff diffraction integrals, was devised. This model accounts for source dimensions, beam spectrum and divergence and detector point spread function (PSF), and can thus be applied to any x-ray imaging system. In particular, by accepting in input the above parameters along with the ones describing the sample, the model can be used to optimize the geometry of the set-up, i.e. to assess the source-to-sample and sample-to-detector distances which maximize feature detection. The model was evaluated by acquiring a range of images of different samples with a laboratory source, and a good agreement was found between simulated and experimental data in all cases. In order to maximize the generality of the results, all acquisitions were carried out using a polychromatic source and an energy-resolving detector; in this way, a range of monochromatic images could be obtained as well as polychromatic images, which can be created by integrating different parts of the acquired spectra. One of the most notable results obtained is that in many practical cases polychromatic PC imaging can provide the same image quality as its monochromatic counterpart. This is an important step in the wider application of PC using conventional sources.
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Affiliation(s)
- A Olivo
- Department of Medical Physics and Bioengineering, University College of London, Malet Place, Gower Street, London WC1E 6BT, UK
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12
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Abstract
We have developed a restoration method for radiographs that enhances image sharpness and reveals bone microstructures that were initially hidden in the soft-tissue glare. The method is two fold: the image is first deconvolved using the Richardson-Lucy algorithm and is then divided with a signal modelling the soft-tissue distribution to increase the overall contrast. Each step has its own merits but the power of the restoration method lies in their combination. The originality of the method is its reliance on a priori information at each step in the processing. We have measured and modelled analytically the point-spread function of a low-dose gas microstrip x-ray detector at several beam energies. We measured the relationship between the local image intensity and the noise variance for these images. The soft-tissue signal was also modelled using a minimum-curvature filtering technique. These results were then combined into an image deconvolution procedure that uses wavelet filtering to reduce restoration noise while keeping the enhanced small-scale features. The method was applied successfully to images of a human-torso phantom and improved the contrast of small details on the bones and in the soft tissues. We measured a mean 54% increase in signal to noise ratio and a mean 105% increase in contrast to noise ratio in the 70 and 140 kVp images we analysed. The method was designed to facilitate the analysis of radiographs by relying on two levels of visual inspection. The contrast of the full image is first enhanced by division with the signal modelling the soft-tissue distribution. Based on the result, a radiologist might decide to zoom in on a given image section. The full restoration method is then applied to that region of interest. Indeed, full image deconvolution is often unnecessary since enhanced small-scale details are not visible at large scale; only the section of interest is processed which is more efficient.
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Affiliation(s)
- Pierre Gravel
- Génie de la production automatisée, Ecole de technologie supérieure, Montréal, Canada.
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Olivo A, Arfelli F, Dreossi D, Longo R, Menk RH, Pani S, Poropat P, Rigon L, Zanconati F, Castelli E. Preliminary study on extremely small angle x-ray scatter imaging with synchrotron radiation. Phys Med Biol 2002; 47:469-80. [PMID: 11848123 DOI: 10.1088/0031-9155/47/3/308] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Among the medical physics community, there is nowadays a great interest in the possible implementation of scatter imaging techniques, especially in the field of breast imaging. It is well known that malignant lesions and normal tissue differ in their scattering signatures, and thus scattered radiation can provide a powerful tool to distinguish between the two cases. Up to now, most of the proposed techniques rely on the detection of radiation scattered at angles of the order of a few degrees, which in most cases results in very high contrast values. On the other hand, at those relatively large angles the scattered flux is relatively low with respect to the primary, which often implies the necessity of increasing the dose delivered to the sample in order to achieve sufficient statistics. Furthermore, most of these techniques are based on pencil beam set-ups, which results in an increase of the overall duration of the examination. We propose here an alternative approach based on the detection of radiation scattered at extremely small angles, of the order of approximately 100-200 microrad. This results in a relatively high scattered flux (5-10% of the primary) and in the possibility of utilizing a fan beam geometry, which reduces the acquisition times with respect to pencil beam set-ups. Images of several samples have been acquired, demonstrating that the proposed technique results in an increased contrast with respect to absorption imaging. Possible in vivo implementations of the technique at no dose expense are finally discussed.
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Affiliation(s)
- A Olivo
- Dipartimento di Fisica, Università di Trieste e INFN, Italy
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