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Guo Z, Song JK, Barbastathis G, Glinsky ME, Vaughan CT, Larson KW, Alpert BK, Levine ZH. Physics-assisted generative adversarial network for X-ray tomography. OPTICS EXPRESS 2022; 30:23238-23259. [PMID: 36225009 DOI: 10.1364/oe.460208] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Accepted: 05/31/2022] [Indexed: 06/16/2023]
Abstract
X-ray tomography is capable of imaging the interior of objects in three dimensions non-invasively, with applications in biomedical imaging, materials science, electronic inspection, and other fields. The reconstruction process can be an ill-conditioned inverse problem, requiring regularization to obtain satisfactory results. Recently, deep learning has been adopted for tomographic reconstruction. Unlike iterative algorithms which require a distribution that is known a priori, deep reconstruction networks can learn a prior distribution through sampling the training distributions. In this work, we develop a Physics-assisted Generative Adversarial Network (PGAN), a two-step algorithm for tomographic reconstruction. In contrast to previous efforts, our PGAN utilizes maximum-likelihood estimates derived from the measurements to regularize the reconstruction with both known physics and the learned prior. Compared with methods with less physics assisting in training, PGAN can reduce the photon requirement with limited projection angles to achieve a given error rate. The advantages of using a physics-assisted learned prior in X-ray tomography may further enable low-photon nanoscale imaging.
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Trapp P, Maier J, Susenburger M, Sawall S, Kachelrieß M. Empirical scatter correction (ESC): CBCT scatter artifact reduction without prior information. Med Phys 2022; 49:4566-4584. [PMID: 35390181 DOI: 10.1002/mp.15656] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Revised: 03/24/2022] [Accepted: 03/27/2022] [Indexed: 11/07/2022] Open
Abstract
BACKGROUND The image quality of cone-beam CT (CBCT) scans severely suffers from scattered radiation if no countermeasures are taken. Scatter artifacts may induce cupping and streak artifacts and lead to a reduced image contrast and wrong CT values of the reconstructed volumes. Established software-based approaches for a correction of scattered radiation typically rely on prior knowledge of the CT system, scan parameters, the scanned object, or all of the aforementioned. PURPOSE This study proposes a simple and effective post-processing software-based correction method of scatter artifacts in CBCT scans without specific prior knowledge. METHODS We propose the empirical scatter correction (ESC) which generates scatter-like basis images from each projection image by convolution operations. A linear combination of these basis images is subtracted from the original projection image. The logarithm is taken and an FDK reconstruction is performed. The coefficients needed for the linear combination are determined automatically by a downhill simplex algorithm such that the resulting reconstructed images show no scatter artifacts. We demonstrate the potential of ESC by correcting simulated volumes with Monte Carlo scatter artifacts, a head phantom scan performed on our table-top CBCT, and a pelvis scan from a Varian Edge CBCT scanner. RESULTS ESC is able to improve the image quality of CBCT scans which is shown on the basis of our simulations and on measured data. For a simulated head CT, the CT value difference to the scatter-free reference image was as low as -6 HU after using ESC whereas the uncorrected data deviated by more than -200 HU from the reference data. Simulations of thorax and abdomen CT scans show that although scatter artifacts are not fully removed, anatomical features which were hard to discover prior to the correction become clearly visible and better segmentable with ESC. Similar results are obtained in the phantom measurement where a comparison to a slit scan of our head phantom shows only small differences. The CT values in soft tissue are improved in this measurement, as well. In soft tissue areas with severe scatter artifacts the CT values agree well with those of the slit scan (difference to slit scan: 35 HU corrected, -289 HU uncorrected). Scatter artifacts in measured patient data can also be reduced using the proposed empirical scatter correction. The results are comparable to those achieved with designated correction algorithms installed on the Varian Edge CBCT system. CONCLUSIONS ESC allows to reduce artifacts caused by patient scatter solely based on the projection data. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Philip Trapp
- Division of X-Ray Imaging and Computed Tomography, German Cancer Research Center (DKFZ), Heidelberg, 69120, Germany.,Department of Physics and Astronomy, Ruprecht-Karls-University, Heidelberg, 69120, Germany
| | - Joscha Maier
- Division of X-Ray Imaging and Computed Tomography, German Cancer Research Center (DKFZ), Heidelberg, 69120, Germany
| | - Markus Susenburger
- Division of X-Ray Imaging and Computed Tomography, German Cancer Research Center (DKFZ), Heidelberg, 69120, Germany.,Department of Physics and Astronomy, Ruprecht-Karls-University, Heidelberg, 69120, Germany
| | - Stefan Sawall
- Division of X-Ray Imaging and Computed Tomography, German Cancer Research Center (DKFZ), Heidelberg, 69120, Germany.,Medical Faculty, Ruprecht-Karls-University, Heidelberg, 69120, Germany
| | - Marc Kachelrieß
- Division of X-Ray Imaging and Computed Tomography, German Cancer Research Center (DKFZ), Heidelberg, 69120, Germany.,Medical Faculty, Ruprecht-Karls-University, Heidelberg, 69120, Germany
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Cheng Z, Wen J, Huang G, Yan J. Applications of artificial intelligence in nuclear medicine image generation. Quant Imaging Med Surg 2021; 11:2792-2822. [PMID: 34079744 PMCID: PMC8107336 DOI: 10.21037/qims-20-1078] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2020] [Accepted: 02/14/2021] [Indexed: 12/12/2022]
Abstract
Recently, the application of artificial intelligence (AI) in medical imaging (including nuclear medicine imaging) has rapidly developed. Most AI applications in nuclear medicine imaging have focused on the diagnosis, treatment monitoring, and correlation analyses with pathology or specific gene mutation. It can also be used for image generation to shorten the time of image acquisition, reduce the dose of injected tracer, and enhance image quality. This work provides an overview of the application of AI in image generation for single-photon emission computed tomography (SPECT) and positron emission tomography (PET) either without or with anatomical information [CT or magnetic resonance imaging (MRI)]. This review focused on four aspects, including imaging physics, image reconstruction, image postprocessing, and internal dosimetry. AI application in generating attenuation map, estimating scatter events, boosting image quality, and predicting internal dose map is summarized and discussed.
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Affiliation(s)
- Zhibiao Cheng
- Department of Biomedical Engineering, School of Life Science, Beijing Institute of Technology, Beijing, China
| | - Junhai Wen
- Department of Biomedical Engineering, School of Life Science, Beijing Institute of Technology, Beijing, China
| | - Gang Huang
- Shanghai Key Laboratory of Molecular Imaging, Shanghai University of Medicine and Health Sciences, Shanghai, China
| | - Jianhua Yan
- Shanghai Key Laboratory of Molecular Imaging, Shanghai University of Medicine and Health Sciences, Shanghai, China
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Liu SZ, Cao Q, Tivnan M, Tilley S, Siewerdsen JH, Stayman JW, Zbijewski W. Model-based dual-energy tomographic image reconstruction of objects containing known metal components. Phys Med Biol 2020; 65:245046. [PMID: 33113519 PMCID: PMC7942762 DOI: 10.1088/1361-6560/abc5a9] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Dual-energy (DE) decomposition has been adopted in orthopedic imaging to measure bone composition and visualize intraarticular contrast enhancement. One of the potential applications involves monitoring of callus mineralization for longitudinal assessment of fracture healing. However, fracture repair usually involves internal fixation hardware that can generate significant artifacts in reconstructed images. To address this challenge, we develop a novel algorithm that combines simultaneous reconstruction-decomposition using a previously reported method for model-based material decomposition (MBMD) augmented by the known-component (KC) reconstruction framework to mitigate metal artifacts. We apply the proposed algorithm to simulated DE data representative of a dedicated extremity cone-beam CT (CBCT) employing an x-ray unit with three vertically arranged sources. The scanner generates DE data with non-coinciding high- and low-energy projection rays when the central source is operated at high tube potential and the peripheral sources at low potential. The proposed algorithm was validated using a digital extremity phantom containing varying concentrations of Ca-water mixtures and Ti implants. Decomposition accuracy was compared to MBMD without the KC model. The proposed method suppressed metal artifacts and yielded estimated Ca concentrations that approached the reconstructions of an implant-free phantom for most mixture regions. In the vicinity of simple components, the errors of Ca density estimates obtained by incorporating KC in MBMD were ∼1.5-5× lower than the errors of conventional MBMD; for cases with complex implants, the errors were ∼3-5× lower. In conclusion, the proposed method can achieve accurate bone mineral density measurements in the presence of metal implants using non-coinciding DE projections acquired on a multisource CBCT system.
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Affiliation(s)
- Stephen Z. Liu
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Qian Cao
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Matthew Tivnan
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Steven Tilley
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Jeffrey H. Siewerdsen
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA
| | - J. Webster Stayman
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA
| | - Wojciech Zbijewski
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA
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Zhang Q, Hu Z, Jiang C, Zheng H, Ge Y, Liang D. Artifact removal using a hybrid-domain convolutional neural network for limited-angle computed tomography imaging. Phys Med Biol 2020; 65:155010. [PMID: 32369793 DOI: 10.1088/1361-6560/ab9066] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
The suppression of streak artifacts in computed tomography with a limited-angle configuration is challenging. Conventional analytical algorithms, such as filtered backprojection (FBP), are not successful due to incomplete projection data. Moreover, model-based iterative total variation algorithms effectively reduce small streaks but do not work well at eliminating large streaks. In contrast, FBP mapping networks and deep-learning-based postprocessing networks are outstanding at removing large streak artifacts; however, these methods perform processing in separate domains, and the advantages of multiple deep learning algorithms operating in different domains have not been simultaneously explored. In this paper, we present a hybrid-domain convolutional neural network (hdNet) for the reduction of streak artifacts in limited-angle computed tomography. The network consists of three components: the first component is a convolutional neural network operating in the sinogram domain, the second is a domain transformation operation, and the last is a convolutional neural network operating in the CT image domain. After training the network, we can obtain artifact-suppressed CT images directly from the sinogram domain. Verification results based on numerical, experimental and clinical data confirm that the proposed method can significantly reduce serious artifacts.
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Affiliation(s)
- Qiyang Zhang
- Research Center for Medical Artificial Intelligence, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, People's Republic of China. Paul C. Lauterbur Research Center for Biomedical Imaging, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong 518055, People's Republic of China. Shenzhen College of Advanced Technology, University of Chinese Academy of Sciences, Shenzhen, Guangdong 518055, People's Republic of China
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Zhang W, Wang L, Li L, Niu T, Li Z, Liang N, Xue Y, Yan B, Hu G. Reconstruction method for DECT with one half-scan plus a second limited-angle scan using prior knowledge of complementary support set (Pri-CSS). Phys Med Biol 2020; 65:025005. [PMID: 31810075 DOI: 10.1088/1361-6560/ab5faf] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Dual-energy computed tomography (DECT) has capability to improve material differentiation, but most scanning schemes require two sets of full-scan measurements at different x-ray spectra, limiting its application to imaging system with incomplete scan. In this study, using one half-scan and a second limited-angle scan, we propose a DECT reconstruction method by exploiting the consistent information of gradient images at high- and low-energy spectra, which relaxes the requirement of data acquisition of DECT. Based on the theory of sampling condition analysis, the complementary support set of gradient images plays an important role in image reconstruction because it constitutes the sufficient and necessary condition for accurate CT reconstruction. For DECT, the gradient images of high- and low-energy CT images ideally share the same complementary support set for the same object. Inspired by this idea, we extract the prior knowledge of complementary support set (Pri-CSS) from the gradient image of the first half-scan CT image to promote the second limited-angle CT reconstruction. Pri-CSS will be incorporated into total variation regularization model in the form of constrains. Alternative direction method is applied to iteratively solve the modified optimization model, thereby deriving the proposed algorithm to recover low-energy CT image from limited-angle measurements. The qualitative and quantitative experiments on digital and real data are performed to validate the proposed method. The results show that the proposed method outperforms its counterparts and achieve high reconstruction quality for the designed scanning configuration.
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Chang Z, Ye DH, Srivastava S, Thibault JB, Sauer K, Bouman C. Prior-Guided Metal Artifact Reduction for Iterative X-Ray Computed Tomography. IEEE TRANSACTIONS ON MEDICAL IMAGING 2019; 38:1532-1542. [PMID: 30571617 DOI: 10.1109/tmi.2018.2886701] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
High-attenuation materials pose significant challenges to computed tomographic imaging. Formed of high mass-density and high atomic number elements, they cause more severe beam hardening and scattering artifacts than do water-like materials. Pre-corrected line-integral density measurements are no longer linearly proportional to the path lengths, leading to reconstructed image suffering from streaking artifacts extending from metal, often along highest-density directions. In this paper, a novel prior-based iterative approach is proposed to reduce metal artifacts. It combines the superiority of statistical methods with the benefits of sinogram completion methods to estimate and correct metal-induced biases. Preliminary results show minimized residual artifacts and significantly improved image quality.
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Zhang H, Gang GJ, Dang H, Stayman JW. Regularization Analysis and Design for Prior-Image-Based X-Ray CT Reconstruction. IEEE TRANSACTIONS ON MEDICAL IMAGING 2018; 37:2675-2686. [PMID: 29994249 PMCID: PMC6295916 DOI: 10.1109/tmi.2018.2847250] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Prior-image-based reconstruction (PIBR) methods have demonstrated great potential for radiation dose reduction in computed tomography applications. PIBR methods take advantage of shared anatomical information between sequential scans by incorporating a patient-specific prior image into the reconstruction objective function, often as a form of regularization. However, one major challenge with PIBR methods is how to optimally determine the prior image regularization strength which balances anatomical information from the prior image with data fitting to the current measurements. Too little prior information yields limited improvements over traditional model-based iterative reconstruction, while too much prior information can force anatomical features from the prior image not supported by the measurement data, concealing true anatomical changes. In this paper, we develop quantitative measures of the bias associated with PIBR. This bias exhibits as a fractional reconstructed contrast of the difference between the prior image and current anatomy, which is quite different from traditional reconstruction biases that are typically quantified in terms of spatial resolution or artifacts. We have derived an analytical relationship between the PIBR bias and prior image regularization strength and illustrated how this relationship can be used as a predictive tool to prospectively determine prior image regularization strength to admit specific kinds of anatomical change in the reconstruction. Because bias is dependent on local statistics, we further generalized shift-variant prior image penalties that permit uniform (shift invariant) admission of anatomical changes across the imaging field of view. We validated the mathematical framework in phantom studies and compared bias predictions with estimates based on brute force exhaustive evaluation using numerous iterative reconstructions across regularization values. The experimental results demonstrate that the proposed analytical approach can predict the bias-regularization relationship accurately, allowing for prospective determination of the prior image regularization strength in PIBR. Thus, the proposed approach provides an important tool for controlling image quality of PIBR methods in a reliable, robust, and efficient fashion.
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Affiliation(s)
- Hao Zhang
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205 USA (telephone: 410-955-1314, )
| | - Grace J. Gang
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205 USA (telephone: 410-955-1314, )
| | - Hao Dang
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205 USA (telephone: 410-955-1314, )
| | - J. Webster Stayman
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205 USA (telephone: 410-955-1314, )
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Waltrich N, Sawall S, Maier J, Kuntz J, Stannigel K, Lindenberg K, Kachelrieß M. Effect of detruncation on the accuracy of Monte Carlo-based scatter estimation in truncated CBCT. Med Phys 2018; 45:3574-3590. [PMID: 29888791 DOI: 10.1002/mp.13041] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2017] [Revised: 05/20/2018] [Accepted: 06/04/2018] [Indexed: 11/07/2022] Open
Abstract
PURPOSE The purpose of this study is to investigate the necessity of detruncation for scatter estimation of truncated cone-beam CT (CBCT) data and to evaluate different detruncation algorithms. Scattered radiation results in some of the most severe artifacts in CT and depends strongly on the size and the shape of the scanned object. Especially in CBCT systems the large cone-angle and the small detector-to-isocenter distance lead to a large amount of scatter detected, resulting in cupping artifacts, streak artifacts, and inaccurate CT-values. If a small field of measurement (FOM) is used, as it is often the case in CBCT systems, data are truncated in longitudinal and lateral direction. Since only truncated data are available as input for the scatter estimation, the already challenging correction of scatter artifacts becomes even more difficult. METHODS The following detruncation methods are compared and evaluated with respect to scatter estimation: constant detruncation, cosine detruncation, adaptive detruncation, and prior-based detruncation using anatomical data from a similar phantom or patient, also compared to the case where no detruncation was performed. Each of the resulting, detruncated reconstructions serve as input volume for a Monte Carlo (MC) scatter estimation and subsequent scatter correction. An evaluation is performed on a head simulation, measurements of a head phantom and a patient using a dental CBCT geometry with a FOM diameter of 11 cm. Additionally, a thorax phantom is measured to assess performance in a C-Arm geometry with a FOM of up to 20 cm. RESULTS If scatter estimation is based on simple detruncation algorithms like a constant or a cosine detruncation scatter is estimated inaccurately, resulting in incorrect CT-values as well as streak artifacts in the corrected volume. For the dental CBCT phantom measurement CT-values for soft tissue were corrected from -204 HU (no scatter correction) to -87 HU (no detruncation), -218 HU (constant detruncation), -141 HU (cosine detruncation), -91 HU (adaptive detruncation), -34 HU (prior-based detruncation using a different prior) and -24 HU (prior-based detruncation using the identical prior) for a reference value of -26 HU measured in slit scan mode. In all cases the prior-based detruncation results in the best scatter correction, followed by the adaptive detruncation, as these algorithms provide a rather accurate model of high-density structures outside the FOM, compared to a simple constant or a cosine detruncation. CONCLUSIONS Our contribution is twofold: first we give a comprehensive comparison of various detruncation methods for the purpose of scatter estimation. We find that the choice of the detruncation method has a significant influence on the quality of MC-based scatter correction. Simple or no detruncation is often insufficient for artifact removal and results in inaccurate CT-values. On the contrary, prior-based detruncation can achieve a high CT-value accuracy and nearly artifact-free volumes from truncated CBCT data when combined with other state-of-the-art artifact corrections. Secondly, we show that prior-based detruncation is effective even with data from a different patient or phantom. The fact that data completion does not require data from the same patient dramatically increases the applicability and usability of this scatter estimation.
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Affiliation(s)
- Nadine Waltrich
- German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120, Heidelberg, Germany
- Department of Physics and Astronomy, Ruprecht-Karls-University, Im Neuenheimer Feld 226, Heidelberg, Germany
| | - Stefan Sawall
- German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120, Heidelberg, Germany
- Department of Physics and Astronomy, Ruprecht-Karls-University, Im Neuenheimer Feld 226, Heidelberg, Germany
| | - Joscha Maier
- German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120, Heidelberg, Germany
- Department of Physics and Astronomy, Ruprecht-Karls-University, Im Neuenheimer Feld 226, Heidelberg, Germany
| | - Jan Kuntz
- German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120, Heidelberg, Germany
- Medical Faculty, Ruprecht-Karls-University, Im Neuenheimer Feld 672, Heidelberg, Germany
| | - Kai Stannigel
- Sirona Dental Systems GmbH, Fabrikstraße 31, 64625, Bensheim, Germany
| | - Kai Lindenberg
- Sirona Dental Systems GmbH, Fabrikstraße 31, 64625, Bensheim, Germany
| | - Marc Kachelrieß
- German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120, Heidelberg, Germany
- Medical Faculty, Ruprecht-Karls-University, Im Neuenheimer Feld 672, Heidelberg, Germany
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Xu S, Uneri A, Khanna AJ, Siewerdsen JH, Stayman JW. Polyenergetic known-component CT reconstruction with unknown material compositions and unknown x-ray spectra. Phys Med Biol 2017; 62:3352-3374. [PMID: 28230539 PMCID: PMC5728157 DOI: 10.1088/1361-6560/aa6285] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Metal artifacts can cause substantial image quality issues in computed tomography. This is particularly true in interventional imaging where surgical tools or metal implants are in the field-of-view. Moreover, the region-of-interest is often near such devices which is exactly where image quality degradations are largest. Previous work on known-component reconstruction (KCR) has shown the incorporation of a physical model (e.g. shape, material composition, etc) of the metal component into the reconstruction algorithm can significantly reduce artifacts even near the edge of a metal component. However, for such approaches to be effective, they must have an accurate model of the component that include energy-dependent properties of both the metal device and the CT scanner, placing a burden on system characterization and component material knowledge. In this work, we propose a modified KCR approach that adopts a mixed forward model with a polyenergetic model for the component and a monoenergetic model for the background anatomy. This new approach called Poly-KCR jointly estimates a spectral transfer function associated with known components in addition to the background attenuation values. Thus, this approach eliminates both the need to know component material composition a prior as well as the requirement for an energy-dependent characterization of the CT scanner. We demonstrate the efficacy of this novel approach and illustrate its improved performance over traditional and model-based iterative reconstruction methods in both simulation studies and in physical data including an implanted cadaver sample.
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Affiliation(s)
- S Xu
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore MD, United States of America
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Zhang C, Zbijewski W, Zhang X, Xu S, Stayman JW. Polyenergetic Known-Component Reconstruction without Prior Shape Models. PROCEEDINGS OF SPIE--THE INTERNATIONAL SOCIETY FOR OPTICAL ENGINEERING 2017; 10132. [PMID: 34188347 DOI: 10.1117/12.2255542] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
Purpose Previous work has demonstrated that structural models of surgical tools and implants can be integrated into model-based CT reconstruction to greatly reduce metal artifacts and improve image quality. This work extends a polyenergetic formulation of known-component reconstruction (Poly-KCR) by removing the requirement that a physical model (e.g. CAD drawing) be known a priori, permitting much more widespread application. Methods We adopt a single-threshold segmentation technique with the help of morphological structuring elements to build a shape model of metal components in a patient scan based on initial filtered-backprojection (FBP) reconstruction. This shape model is used as an input to Poly-KCR, a formulation of known-component reconstruction that does not require a prior knowledge of beam quality or component material composition. An investigation of performance as a function of segmentation thresholds is performed in simulation studies, and qualitative comparisons to Poly-KCR with an a priori shape model are made using physical CBCT data of an implanted cadaver and in patient data from a prototype extremities scanner. Results We find that model-free Poly-KCR (MF-Poly-KCR) provides much better image quality compared to conventional reconstruction techniques (e.g. FBP). Moreover, the performance closely approximates that of Poly- KCR with an a prior shape model. In simulation studies, we find that imaging performance generally follows segmentation accuracy with slight under- or over-estimation based on the shape of the implant. In both simulation and physical data studies we find that the proposed approach can remove most of the blooming and streak artifacts around the component permitting visualization of the surrounding soft-tissues. Conclusion This work shows that it is possible to perform known-component reconstruction without prior knowledge of the known component. In conjunction with the Poly-KCR technique that does not require knowledge of beam quality or material composition, very little needs to be known about the metal implant and system beforehand. These generalizations will allow more widespread application of KCR techniques in real patient studies where the information of surgical tools and implants is limited or not available.
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Affiliation(s)
- C Zhang
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore MD, USA 21205
| | - W Zbijewski
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore MD, USA 21205
| | - X Zhang
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore MD, USA 21205
| | - S Xu
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore MD, USA 21205
| | - J W Stayman
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore MD, USA 21205
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Zhang X, Tilley S, Xu S, Mathews A, McVeigh ER, Stayman JW. Deformable Known Component Model-Based Reconstruction for Coronary CT Angiography. PROCEEDINGS OF SPIE--THE INTERNATIONAL SOCIETY FOR OPTICAL ENGINEERING 2017; 10132. [PMID: 34188348 DOI: 10.1117/12.2255303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
Purpose Atherosclerosis detection remains challenging in coronary CT angiography for patients with cardiac implants. Pacing electrodes of a pacemaker or lead components of a defibrillator can create substantial blooming and streak artifacts in the heart region, severely hindering the visualization of a plaque of interest. We present a novel reconstruction method that incorporates a deformable model for metal leads to eliminate metal artifacts and improve anatomy visualization even near the boundary of the component. Methods The proposed reconstruction method, referred as STF-dKCR, includes a novel parameterization of the component that integrates deformation, a 3D-2D preregistration process that estimates component shape and position, and a polyenergetic forward model for x-ray propagation through the component where the spectral properties are jointly estimated. The methodology was tested on physical data of a cardiac phantom acquired on a CBCT testbench. The phantom included a simulated vessel, a metal wire emulating a pacing lead, and a small Teflon sphere attached to the vessel wall, mimicking a calcified plaque. The proposed method was also compared to the traditional FBP reconstruction and an interpolation-based metal correction method (FBP-MAR). Results Metal artifacts presented in standard FBP reconstruction were significantly reduced in both FBP-MAR and STF-dKCR, yet only the STF-dKCR approach significantly improved the visibility of the small Teflon target (within 2 mm of the metal wire). The attenuation of the Teflon bead improved to 0.0481 mm-1 with STF-dKCR from 0.0166 mm-1 with FBP and from 0.0301 mm-1 with FBP-MAR - much closer to the expected 0.0414 mm-1. Conclusion The proposed method has the potential to improve plaque visualization in coronary CT angiography in the presence of wire-shaped metal components.
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Affiliation(s)
- X Zhang
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD USA 21205
| | - S Tilley
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD USA 21205
| | - S Xu
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD USA 21205
| | - A Mathews
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD USA 21205
| | - E R McVeigh
- Department of Bioengineering, Medicine, Radiology, UC San Diego, La Jolla, CA USA 92093
| | - J W Stayman
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD USA 21205
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Liugang G, Hongfei S, Xinye N, Mingming F, Zheng C, Tao L. Metal artifact reduction through MVCBCT and kVCT in radiotherapy. Sci Rep 2016; 6:37608. [PMID: 27869185 PMCID: PMC5116646 DOI: 10.1038/srep37608] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2016] [Accepted: 10/31/2016] [Indexed: 11/20/2022] Open
Abstract
This study proposes a new method for removal of metal artifacts from megavoltage cone beam computed tomography (MVCBCT) and kilovoltage CT (kVCT) images. Both images were combined to obtain prior image, which was forward projected to obtain surrogate data and replace metal trace in the uncorrected kVCT image. The corrected image was then reconstructed through filtered back projection. A similar radiotherapy plan was designed using the theoretical CT image, the uncorrected kVCT image, and the corrected image. The corrected images removed most metal artifacts, and the CT values were accurate. The corrected image also distinguished the hollow circular hole at the center of the metal. The uncorrected kVCT image did not display the internal structure of the metal, and the hole was misclassified as metal portion. Dose distribution calculated based on the corrected image was similar to that based on the theoretical CT image. The calculated dose distribution also evidently differed between the uncorrected kVCT image and the theoretical CT image. The use of the combined kVCT and MVCBCT to obtain the prior image can distinctly improve the quality of CT images containing large metal implants.
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Affiliation(s)
- Gao Liugang
- Second People's Hospital of Changzhou, Nanjing Medical University, Changzhou 213003, China
| | - Sun Hongfei
- Second People's Hospital of Changzhou, Nanjing Medical University, Changzhou 213003, China
| | - Ni Xinye
- Second People's Hospital of Changzhou, Nanjing Medical University, Changzhou 213003, China
| | - Fang Mingming
- Changzhou Cancer Hospital of Soochow University, Changzhou 213001, China
| | - Cao Zheng
- The Third Affiliated Hospital of Anhui Medical University, Anhui 230000, China
| | - Lin Tao
- Second People's Hospital of Changzhou, Nanjing Medical University, Changzhou 213003, China
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14
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Zhang W, Zhang H, Li L, Wang L, Cai A, Li Z, Yan B. A promising limited angular computed tomography reconstruction via segmentation based regional enhancement and total variation minimization. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2016; 87:083104. [PMID: 27587097 DOI: 10.1063/1.4958898] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
X-ray computed tomography (CT) is a powerful and common inspection technique used for the industrial non-destructive testing. However, large-sized and heavily absorbing objects cause the formation of artifacts because of either the lack of specimen penetration in specific directions or the acquisition of data from only a limited angular range of views. Although the sparse optimization-based methods, such as the total variation (TV) minimization method, can suppress artifacts to some extent, reconstructing the images such that they converge to accurate values remains difficult because of the deficiency in continuous angular data and inconsistency in the projections. To address this problem, we use the idea of regional enhancement of the true values and suppression of the illusory artifacts outside the region to develop an efficient iterative algorithm. This algorithm is based on the combination of regional enhancement of the true values and TV minimization for the limited angular reconstruction. In this algorithm, the segmentation approach is introduced to distinguish the regions of different image knowledge and generate the support mask of the image. A new regularization term, which contains the support knowledge to enhance the true values of the image, is incorporated into the objective function. Then, the proposed optimization model is solved by variable splitting and the alternating direction method efficiently. A compensation approach is also designed to extract useful information from the initial projections and thus reduce false segmentation result and correct the segmentation support and the segmented image. The results obtained from comparing both simulation studies and real CT data set reconstructions indicate that the proposed algorithm generates a more accurate image than do the other reconstruction methods. The experimental results show that this algorithm can produce high-quality reconstructed images for the limited angular reconstruction and suppress the illusory artifacts caused by the deficiency in valid data.
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Affiliation(s)
- Wenkun Zhang
- National Digital Switching System Engineering and Technological Research Center, Zhengzhou, Henan 450002, China
| | - Hanming Zhang
- National Digital Switching System Engineering and Technological Research Center, Zhengzhou, Henan 450002, China
| | - Lei Li
- National Digital Switching System Engineering and Technological Research Center, Zhengzhou, Henan 450002, China
| | - Linyuan Wang
- National Digital Switching System Engineering and Technological Research Center, Zhengzhou, Henan 450002, China
| | - Ailong Cai
- National Digital Switching System Engineering and Technological Research Center, Zhengzhou, Henan 450002, China
| | - Zhongguo Li
- National Digital Switching System Engineering and Technological Research Center, Zhengzhou, Henan 450002, China
| | - Bin Yan
- National Digital Switching System Engineering and Technological Research Center, Zhengzhou, Henan 450002, China
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15
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Ritschl L, Kuntz J, Fleischmann C, Kachelrieß M. The rotate-plus-shift C-arm trajectory. Part I. Complete data with less than 180° rotation. Med Phys 2016; 43:2295. [DOI: 10.1118/1.4944785] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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16
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Abascal JFPJ, Abella M, Marinetto E, Pascau J, Desco M. A Novel Prior- and Motion-Based Compressed Sensing Method for Small-Animal Respiratory Gated CT. PLoS One 2016; 11:e0149841. [PMID: 26959370 PMCID: PMC4784891 DOI: 10.1371/journal.pone.0149841] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2015] [Accepted: 01/30/2016] [Indexed: 01/15/2023] Open
Abstract
Low-dose protocols for respiratory gating in cardiothoracic small-animal imaging lead to streak artifacts in the images reconstructed with a Feldkamp-Davis-Kress (FDK) method. We propose a novel prior- and motion-based reconstruction (PRIMOR) method, which improves prior-based reconstruction (PBR) by adding a penalty function that includes a model of motion. The prior image is generated as the average of all the respiratory gates, reconstructed with FDK. Motion between respiratory gates is estimated using a nonrigid registration method based on hierarchical B-splines. We compare PRIMOR with an equivalent PBR method without motion estimation using as reference the reconstruction of high dose data. From these data acquired with a micro-CT scanner, different scenarios were simulated by changing photon flux and number of projections. Methods were evaluated in terms of contrast-to-noise-ratio (CNR), mean square error (MSE), streak artefact indicator (SAI), solution error norm (SEN), and correction of respiratory motion. Also, to evaluate the effect of each method on lung studies quantification, we have computed the Jaccard similarity index of the mask obtained from segmenting each image as compared to those obtained from the high dose reconstruction. Both iterative methods greatly improved FDK reconstruction in all cases. PBR was prone to streak artifacts and presented blurring effects in bone and lung tissues when using both a low number of projections and low dose. Adopting PBR as a reference, PRIMOR increased CNR up to 33% and decreased MSE, SAI and SEN up to 20%, 4% and 13%, respectively. PRIMOR also presented better compensation for respiratory motion and higher Jaccard similarity index. In conclusion, the new method proposed for low-dose respiratory gating in small-animal scanners shows an improvement in image quality and allows a reduction of dose or a reduction of the number of projections between two and three times with respect to previous PBR approaches.
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Affiliation(s)
- Juan F. P. J. Abascal
- Departamento de Bioingeniería e Ingeniería Aeroespacial, Universidad Carlos III de Madrid, Madrid, Spain
- Instituto de Investigación Sanitaria Gregorio Marañón (IiSGM), Madrid, Spain
| | - Monica Abella
- Departamento de Bioingeniería e Ingeniería Aeroespacial, Universidad Carlos III de Madrid, Madrid, Spain
- Instituto de Investigación Sanitaria Gregorio Marañón (IiSGM), Madrid, Spain
- * E-mail:
| | - Eugenio Marinetto
- Departamento de Bioingeniería e Ingeniería Aeroespacial, Universidad Carlos III de Madrid, Madrid, Spain
- Instituto de Investigación Sanitaria Gregorio Marañón (IiSGM), Madrid, Spain
| | - Javier Pascau
- Departamento de Bioingeniería e Ingeniería Aeroespacial, Universidad Carlos III de Madrid, Madrid, Spain
- Instituto de Investigación Sanitaria Gregorio Marañón (IiSGM), Madrid, Spain
| | - Manuel Desco
- Departamento de Bioingeniería e Ingeniería Aeroespacial, Universidad Carlos III de Madrid, Madrid, Spain
- Instituto de Investigación Sanitaria Gregorio Marañón (IiSGM), Madrid, Spain
- Centro de Investigación en Red de Salud Mental (CIBERSAM), Madrid, Spain
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17
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Pourmorteza A, Dang H, Siewerdsen JH, Stayman JW. Reconstruction of difference in sequential CT studies using penalized likelihood estimation. Phys Med Biol 2016; 61:1986-2002. [PMID: 26894795 PMCID: PMC4948746 DOI: 10.1088/0031-9155/61/5/1986] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Characterization of anatomical change and other differences is important in sequential computed tomography (CT) imaging, where a high-fidelity patient-specific prior image is typically present, but is not used, in the reconstruction of subsequent anatomical states. Here, we introduce a penalized likelihood (PL) method called reconstruction of difference (RoD) to directly reconstruct a difference image volume using both the current projection data and the (unregistered) prior image integrated into the forward model for the measurement data. The algorithm utilizes an alternating minimization to find both the registration and reconstruction estimates. This formulation allows direct control over the image properties of the difference image, permitting regularization strategies that inhibit noise and structural differences due to inconsistencies between the prior image and the current data. Additionally, if the change is known to be local, RoD allows local acquisition and reconstruction, as opposed to traditional model-based approaches that require a full support field of view (or other modifications). We compared the performance of RoD to a standard PL algorithm, in simulation studies and using test-bench cone-beam CT data. The performances of local and global RoD approaches were similar, with local RoD providing a significant computational speedup. In comparison across a range of data with differing fidelity, the local RoD approach consistently showed lower error (with respect to a truth image) than PL in both noisy data and sparsely sampled projection scenarios. In a study of the prior image registration performance of RoD, a clinically reasonable capture ranges were demonstrated. Lastly, the registration algorithm had a broad capture range and the error for reconstruction of CT data was 35% and 20% less than filtered back-projection for RoD and PL, respectively. The RoD has potential for delivering high-quality difference images in a range of sequential clinical scenarios including image-guided surgeries and treatments where accurate and quantitative assessments of anatomical change is desired.
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Affiliation(s)
- A Pourmorteza
- Department of Radiology and Imaging Sciences, National Institutes of Health Clinical Center, Bethesda, MD 20814, USA
| | - H Dang
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA
| | - J H Siewerdsen
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA
| | - J W Stayman
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA
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18
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Wu M, Keil A, Constantin D, Star-Lack J, Zhu L, Fahrig R. Metal artifact correction for x-ray computed tomography using kV and selective MV imaging. Med Phys 2014; 41:121910. [PMID: 25471970 PMCID: PMC4290750 DOI: 10.1118/1.4901551] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2014] [Revised: 10/09/2014] [Accepted: 10/19/2014] [Indexed: 11/07/2022] Open
Abstract
PURPOSE The overall goal of this work is to improve the computed tomography (CT) image quality for patients with metal implants or fillings by completing the missing kilovoltage (kV) projection data with selectively acquired megavoltage (MV) data that do not suffer from photon starvation. When both of these imaging systems, which are available on current radiotherapy devices, are used, metal streak artifacts are avoided, and the soft-tissue contrast is restored, even for regions in which the kV data cannot contribute any information. METHODS Three image-reconstruction methods, including two filtered back-projection (FBP)-based analytic methods and one iterative method, for combining kV and MV projection data from the two on-board imaging systems of a radiotherapy device are presented in this work. The analytic reconstruction methods modify the MV data based on the information in the projection or image domains and then patch the data onto the kV projections for a FBP reconstruction. In the iterative reconstruction, the authors used dual-energy (DE) penalized weighted least-squares (PWLS) methods to simultaneously combine the kV/MV data and perform the reconstruction. RESULTS The authors compared kV/MV reconstructions to kV-only reconstructions using a dental phantom with fillings and a hip-implant numerical phantom. Simulation results indicated that dual-energy sinogram patch FBP and the modified dual-energy PWLS method can successfully suppress metal streak artifacts and restore information lost due to photon starvation in the kV projections. The root-mean-square errors of soft-tissue patterns obtained using combined kV/MV data are 10-15 Hounsfield units smaller than those of the kV-only images, and the structural similarity index measure also indicates a 5%-10% improvement in the image quality. The added dose from the MV scan is much less than the dose from the kV scan if a high efficiency MV detector is assumed. CONCLUSIONS The authors have shown that it is possible to improve the image quality of kV CTs for patients with metal implants or fillings by completing the missing kV projection data with selectively acquired MV data that do not suffer from photon starvation. Numerical simulations demonstrated that dual-energy sinogram patch FBP and a modified kV/MV PWLS method can successfully suppress metal streak artifacts and restore information lost due to photon starvation in kV projections. Combined kV/MV images may permit the improved delineation of structures of interest in CT images for patients with metal implants or fillings.
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Affiliation(s)
- Meng Wu
- Department of Electrical Engineering, Stanford University, Stanford, California 94305
| | | | | | - Josh Star-Lack
- Varian Medical Systems, Inc., Palo Alto, California 94304
| | - Lei Zhu
- Nuclear and Radiological Engineering and Medical Physics Programs, The George W. Woodruff School of Mechanical Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332
| | - Rebecca Fahrig
- Department of Radiology, Stanford University, Stanford, California 94305
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19
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Flach B, Brehm M, Sawall S, Kachelrieß M. Deformable 3D–2D registration for CT and its application to low dose tomographic fluoroscopy. Phys Med Biol 2014; 59:7865-87. [DOI: 10.1088/0031-9155/59/24/7865] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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20
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Dang H, Wang AS, Sussman MS, Siewerdsen JH, Stayman JW. dPIRPLE: a joint estimation framework for deformable registration and penalized-likelihood CT image reconstruction using prior images. Phys Med Biol 2014; 59:4799-826. [PMID: 25097144 PMCID: PMC4142353 DOI: 10.1088/0031-9155/59/17/4799] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
Sequential imaging studies are conducted in many clinical scenarios. Prior images from previous studies contain a great deal of patient-specific anatomical information and can be used in conjunction with subsequent imaging acquisitions to maintain image quality while enabling radiation dose reduction (e.g., through sparse angular sampling, reduction in fluence, etc). However, patient motion between images in such sequences results in misregistration between the prior image and current anatomy. Existing prior-image-based approaches often include only a simple rigid registration step that can be insufficient for capturing complex anatomical motion, introducing detrimental effects in subsequent image reconstruction. In this work, we propose a joint framework that estimates the 3D deformation between an unregistered prior image and the current anatomy (based on a subsequent data acquisition) and reconstructs the current anatomical image using a model-based reconstruction approach that includes regularization based on the deformed prior image. This framework is referred to as deformable prior image registration, penalized-likelihood estimation (dPIRPLE). Central to this framework is the inclusion of a 3D B-spline-based free-form-deformation model into the joint registration-reconstruction objective function. The proposed framework is solved using a maximization strategy whereby alternating updates to the registration parameters and image estimates are applied allowing for improvements in both the registration and reconstruction throughout the optimization process. Cadaver experiments were conducted on a cone-beam CT testbench emulating a lung nodule surveillance scenario. Superior reconstruction accuracy and image quality were demonstrated using the dPIRPLE algorithm as compared to more traditional reconstruction methods including filtered backprojection, penalized-likelihood estimation (PLE), prior image penalized-likelihood estimation (PIPLE) without registration, and prior image penalized-likelihood estimation with rigid registration of a prior image (PIRPLE) over a wide range of sampling sparsity and exposure levels.
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Affiliation(s)
- H Dang
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore MD 21205, USA
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