Using tissue texture surrounding calcification clusters to predict benign vs malignant outcomes

Quantifying tumour heterogeneity with CT

Heterogeneity is a key feature of malignancy associated with adverse tumour biology. Quantifying heterogeneity could provide a useful non-invasive imaging biomarker. Heterogeneity on computed tomography (CT) can be quantified using texture analysis which extracts spatial information from CT images (unenhanced, contrast-enhanced and derived images such as CT perfusion) that may not be perceptible to the naked eye. The main components of texture analysis can be categorized into image transformation and quantification. Image transformation filters the conventional image into its basic components (spatial, frequency, etc.) to produce derived subimages. Texture quantification techniques include structural-, model- (fractal dimensions), statistical- and frequency-based methods. The underlying tumour biology that CT texture analysis may reflect includes (but is not limited to) tumour hypoxia and angiogenesis. Emerging studies show that CT texture analysis has the potential to be a useful adjunct in clinical oncologic imaging, providing important information about tumour characterization, prognosis and treatment prediction and response.

Heterogeneity of focal breast lesions and surrounding tissue assessed by mammographic texture analysis: preliminary evidence of an association with tumor invasion and estrogen receptor status

AIM

This pilot study investigates whether heterogeneity in focal breast lesions and surrounding tissue assessed on mammography is potentially related to cancer invasion and hormone receptor status.

MATERIALS AND METHODS

Texture analysis (TA) assessed the heterogeneity of focal lesions and their surrounding tissues in digitized mammograms from 11 patients randomly selected from an imaging archive [ductal carcinoma in situ (DCIS) only, n = 4; invasive carcinoma (IC) with DCIS, n = 3; IC only, n = 4]. TA utilized band-pass image filtration to highlight image features at different spatial frequencies (filter values: 1.0-2.5) from fine to coarse texture. The distribution of features in the derived images was quantified using uniformity.

RESULTS

Significant differences in uniformity were observed between patient groups for all filter values. With medium scale filtration (filter value = 1.5) pure DCIS was more uniform (median = 0.281) than either DCIS with IC (median = 0.246, p = 0.0102) or IC (median = 0.249, p = 0.0021). Lesions with high levels of estrogen receptor expression were more uniform, most notably with coarse filtration (filter values 2.0 and 2.5, r(s) = 0.812, p = 0.002). Comparison of uniformity values in focal lesions and surrounding tissue showed significant differences between DCIS with or without IC versus IC (p = 0.0009).

CONCLUSION

This pilot study shows the potential for computer-based assessments of heterogeneity within focal mammographic lesions and surrounding tissue to identify adverse pathological features in mammographic lesions. The technique warrants further investigation as a possible adjunct to existing computer aided diagnosis systems.

Downgrading BIRADS 3 to BIRADS 2 category using a computer-aided microcalcification analysis and risk assessment system for early breast cancer

This paper explores the potential of a computer-aided diagnosis system to discriminate the real benign microcalcifications among a specific subset of 109 patients with BIRADS 3 mammograms who had undergone biopsy, thus making it possible to downgrade them to BIRADS 2 category. The system detected and quantified critical features of microcalcifications and classified them on a risk percentage scale for malignancy. The system successfully detected all cancers. Nevertheless, it suggested biopsy for 11/15 atypical lesions. Finally, the system characterized as definitely benign (BIRADS 2) 29/88 benign lesions, previously assigned to BIRADS 3, and thus achieved a reduction of 33% in unnecessary biopsies.

Texture analysis of tissue surrounding microcalcifications on mammograms for breast cancer diagnosis

Diagnosis of microcalcifications (MCs) is challenged by the presence of dense breast parenchyma, resulting in low specificity values and thus in unnecessary biopsies. The current study investigates whether texture properties of the tissue surrounding MCs can contribute to breast cancer diagnosis. A case sample of 100 biopsy-proved MC clusters (46 benign, 54 malignant) from 85 dense mammographic images, included in the Digital Database for Screening Mammography, was analysed. Regions of interest (ROIs) containing the MCs were pre-processed using a wavelet-based contrast enhancement method, followed by local thresholding to segment MCs; the segmented MCs were excluded from original image ROIs, and the remaining area (surrounding tissue) was subjected to texture analysis. Four categories of textural features (first order statistics, co-occurrence matrices features, run length matrices features and Laws' texture energy measures) were extracted from the surrounding tissue. The ability of each feature category in discriminating malignant from benign tissue was investigated using a k-nearest neighbour (kNN) classifier. An additional classification scheme was performed by combining classification outputs of three textural feature categories (the most discriminating ones) with a majority voting rule. Receiver operating characteristic (ROC) analysis was conducted for classifier performance evaluation of the individual textural feature categories and of the combined classification scheme. The best performance was achieved by the combined classification scheme yielding an area under the ROC curve (A(z)) of 0.96 (sensitivity 94.4%, specificity 80.0%). Texture analysis of tissue surrounding MCs shows promising results in computer-aided diagnosis of breast cancer and may contribute to the reduction of unnecessary biopsies.

A study on the computerized fractal analysis of architectural distortion in screening mammograms

Architectural distortion (AD) is a sign of malignancy often missed during mammographic interpretation. The purpose of this study was to explore the application of fractal analysis to the investigation of AD in screening mammograms. The study was performed using mammograms from the Digital Database for Screening Mammography (DDSM). The fractal dimension (FD) of mammographic regions of interest (ROIs) was calculated using the circular average power spectrum technique. Initially, the variability of the FD estimates depending on ROI location, mammographic view and breast side was studied on normal mammograms. Then, the estimated FD was evaluated using receiver operating characteristics (ROC) analysis to determine if it can discriminate ROIs depicting AD from those depicting normal breast parenchyma. The effect of several factors such as ROI size, image subsampling and breast density was studied in detail. Overall, the average FD of the normal ROIs was statistically significantly higher than that of the ROIs with AD. This result was consistent across all factors studied. For the studied set of implementation parameters, the best ROC performance achieved was 0.89 +/- 0.02. The generalizability of these conclusions across different digitizers was also demonstrated.

Classification of breast ultrasound images using fractal feature

Fractal analyses have been applied successfully for the image compression, texture analysis, and texture image segmentation. The fractal dimension could be used to quantify the texture information. In this study, the differences of gray value of neighboring pixels are used to estimate the fractal dimension of an ultrasound image of breast lesion by using the fractal Brownian motion. Furthermore, a computer-aided diagnosis (CAD) system based on the fractal analysis is proposed to classify the breast lesions into two classes: benign and malignant. To improve the classification performances, the ultrasound images are preprocessed by using morphology operations and histogram equalization. Finally, the k-means classification method is used to classify benign tumors from malignant ones. The US breast image databases include only histologically confirmed cases: 110 malignant and 140 benign tumors, which were recorded. All the digital images were obtained prior to biopsy using by an ATL HDI 3000 system. The receiver operator characteristic (ROC) area index AZ is 0.9218, which represents the diagnostic performance.

Correspondence in texture features between two mammographic views

It is well established that radiologists are better able to interpret mammograms when two mammographic views are available. Consequently, two mammographic projections are standard: mediolateral oblique (MLO) and craniocaudal (CC). Computer-aided diagnosis algorithms have been investigated for assisting in the detection and diagnosis of breast lesions in digitized/digital mammograms. A few previous studies suggest that computer-aided systems may also benefit from combining evidence from the two views. Intuitively, we expect that there would only be value in merging data from two views if they provide complementary information. A measure of the similarity of information is the correlation coefficient between corresponding features from the MLO and CC views. The purpose of this study was to investigate the correspondence in Haralick's texture features between the MLO and CC mammographic views of breast lesions. Features were ranked on the basis of correlation values and the two-view correlation of features for subgroups of data including masses versus calcification and benign versus malignant lesions were compared. All experiments were performed on a subset of mammography cases from the Digital Database for Screening Mammography (DDSM). It was observed that the texture features from the MLO and CC views were less strongly correlated for calcification lesions than for mass lesions. Similarly, texture features from the two views were less strongly correlated for benign lesions than for malignant lesions. These differences were statistically significant. The results suggest that the inclusion of texture features from multiple mammographic views in a CADx algorithm may impact the accuracy of diagnosis of calcification lesions and benign lesions.

Computer-assisted detection of mammographic masses: a template matching scheme based on mutual information

The purpose of this study was to develop a knowledge-based scheme for the detection of masses on digitized screening mammograms. The computer-assisted detection (CAD) scheme utilizes a knowledge databank of mammographic regions of interest (ROIs) with known ground truth. Each ROI in the databank serves as a template. The CAD system follows a template matching approach with mutual information as the similarity metric to determine if a query mammographic ROI depicts a true mass. Based on their information content, all similar ROIs in the databank are retrieved and rank-ordered. Then, a decision index is calculated based on the query's best matches. The decision index effectively combines the similarity indices and ground truth of the best-matched templates into a prediction regarding the presence of a mass in the query mammographic ROI. The system was developed and evaluated using a database of 1465 ROIs extracted from the Digital Database for Screening Mammography. There were 809 ROIs with confirmed masses (455 malignant and 354 benign) and 656 normal ROIs. CAD performance was assessed using a leave-one-out sampling scheme and Receiver Operating Characteristics analysis. Depending on the formulation of the decision index, CAD performance as high as A(zeta) = 0.87 +/- 0.01 was achieved. The CAD detection rate was consistent for both malignant and benign masses. In addition, the impact of certain implementation parameters on the detection accuracy and speed of the proposed CAD scheme was studied in more detail.

Optimal filter-based detection of microcalcifications

This paper deals with the problem of texture feature extraction in digital mammograms. We use the extracted features to discriminate between texture representing clusters of microcalcifications and texture representing normal tissue. Having a two-class problem, we suggest a texture feature extraction method based on a single filter optimized with respect to the Fisher criterion. The advantage of this criterion is that it uses both the feature mean and the feature variance to achieve good feature separation. Image compression is desirable to facilitate electronic transmission and storage of digitized mammograms. In this paper, we also explore the effects of data compression on the performance of our proposed detection scheme. The mammograms in our test set were compressed at different ratios using the Joint Photographic Experts Group compression method. Results from an experimental study indicate that our scheme is very well suited for detecting clustered microcalcifications in both uncompressed and compressed mammograms. For the uncompressed mammograms, at a rate of 1.5 false positive clusters/image our method reaches a true positive rate of about 95%, which is comparable to the best results achieved so far. The detection performance for images compressed by a factor of about four is very similar to the performance for uncompressed images.

Breast cancer diagnosis using self-organizing map for sonography

The purpose of this study was to evaluate the performance of neural network model self-organizing maps (SOM) in the classification of benign and malignant sonographic breast lesions. A total of 243 breast tumors (82 malignant and 161 benign) were retrospectively evaluated. When a sonogram was performed, the analog video signal was captured to obtain a digitized sonographic image. The physician selected the region of interest in the sonography. An SOM model using 24 autocorrelation texture features classified the tumor as benign or malignant. In the experiment, cases were sampled with k-fold cross-validation (k = 10) to evaluate the performance using receiver operating characteristic (ROC) curves. The ROC area index for the proposed SOM system is 0.9357 +/- 0.0152, the accuracy is 85. 6%, the sensitivity is 97.6%, the specificity is 79.5%, the positive predictive value is 70.8%, and the negative predictive value is 98. 5%. This computer-aided diagnosis system can provide a useful tool and its high negative predictive value could potentially help avert benign biopsies.

Effect of patient history data on the prediction of breast cancer from mammographic findings with artificial neural networks

RATIONALE AND OBJECTIVES

The authors evaluated the contribution of medical history data to the prediction of breast cancer with artificial neural network (ANN) models based on mammographic findings.

MATERIALS AND METHODS

Three ANNs were developed: The first used 10 Breast Imaging Reporting and Data System (BI-RADS) variables; the second, the BI-RADS variables plus patient age; the third, the BI-RADS variables, patient age, and seven other history variables, for a total of 18 inputs. Performance of the ANNs and the original radiologist's impression were evaluated with five metrics: receiver operating characteristic area index (Az); specificity at given sensitivities of 100%, 98%, and 95%; and positive predictive value.

RESULTS

All three ANNs consistently outperformed the radiologist's impression over all five performance metrics. The patient-age variable was particularly valuable. Adding the age variable to the basic ANN model, which used only the BI-RADS findings, significantly improved Az (P = .028). In fact, replacing all history data with just the age variable resulted in virtually no changes for Az or specificity at 98% sensitivity (P = .324 and P = .410, respectively).

CONCLUSION

Patient age was an important variable for the prediction of breast cancer from mammographic findings with the ANNs. For this data set, all history data could be replaced with age alone.

Computerized analysis of mammographic microcalcifications in morphological and texture feature spaces

We are developing computerized feature extraction and classification methods to analyze malignant and benign microcalcifications on digitized mammograms. Morphological features that described the size, contrast, and shape of microcalcifications and their variations within a cluster were designed to characterize microcalcifications segmented from the mammographic background. Texture features were derived from the spatial gray-level dependence (SGLD) matrices constructed at multiple distances and directions from tissue regions containing microcalcifications. A genetic algorithm (GA) based feature selection technique was used to select the best feature subset from the multi-dimensional feature spaces. The GA-based method was compared to the commonly used feature selection method based on the stepwise linear discriminant analysis (LDA) procedure. Linear discriminant classifiers using the selected features as input predictor variables were formulated for the classification task. The discriminant scores output from the classifiers were analyzed by receiver operating characteristic (ROC) methodology and the classification accuracy was quantified by the area, Az, under the ROC curve. We analyzed a data set of 145 mammographic microcalcification clusters in this study. It was found that the feature subsets selected by the GA-based method are comparable to or slightly better than those selected by the stepwise LDA method. The texture features (Az = 0.84) were more effective than morphological features (Az = 0.79) in distinguishing malignant and benign microcalcifications. The highest classification accuracy (Az = 0.89) was obtained in the combined texture and morphological feature space. The improvement was statistically significant in comparison to classification in either the morphological (p = 0.002) or the texture (p = 0.04) feature space alone. The classifier using the best feature subset from the combined feature space and an appropriate decision threshold could correctly identify 35% of the benign clusters without missing a malignant cluster. When the average discriminant score from all views of the same cluster was used for classification, the Az value increased to 0.93 and the classifier could identify 50% of the benign clusters at 100% sensitivity for malignancy. Alternatively, if the minimum discriminant score from all views of the same cluster was used, the Az value would be 0.90 and a specificity of 32% would be obtained at 100% sensitivity. The results of this study indicate the potential of using combined morphological and texture features for computer-aided classification of microcalcifications.

Texture analysis of cerebral white matter in SIV-infected macaque monkeys

Image texture analysis is used in a wide variety of applications in medical research. Neurovirulent simian immunodeficiency virus (SIV) infection in monkeys is considered a good model for HIV-1 infection in humans and causes neuropathological changes in white matter which can include diffuse myelin pallor, subtle white matter astrocytosis, perivascular macrophage infiltrates, and microglial nodules with multinucleated giant cells. The ability of image texture analysis to quantify these changes was evaluated. Sections of thionin-stained brain tissue from eight male rhesus macaques ranging in age from 42-59 months were used. Four animals served as controls and four animals were infected with neurovirulent SIVmac239/17E-R71 by bone marrow inoculation. Images of cerebral white matter were captured and analyzed by calculating 13 textural features based on statistical analysis of spatial co-occurrence matrices. Statistical analysis of the results included multiple comparisons using the Newman-Keuls multiple range test. The effect of variation in background illumination used at image acquisition was also evaluated. Ten of the 13 textural features used in this study successfully discriminated between tissue from control and SIV-infected animals and were consistent with independent neuropathological assessment. Three textural features were highly sensitive to variation in background illumination and found not useful in this application.

Computerized classification of malignant and benign microcalcifications on mammograms: texture analysis using an artificial neural network

We investigated the feasibility of using texture features extracted from mammograms to predict whether the presence of microcalcifications is associated with malignant or benign pathology. Eighty-six mammograms from 54 cases (26 benign and 28 malignant) were used as case samples. All lesions had been recommended for surgical biopsy by specialists in breast imaging. A region of interest (ROI) containing the microcalcifications was first corrected for the low-frequency background density variation. Spatial grey level dependence (SGLD) matrices at ten different pixel distances in both the axial and diagonal directions were constructed from the background-corrected ROI. Thirteen texture measures were extracted from each SGLD matrix. Using a stepwise feature selection technique, which maximized the separation of the two class distributions, subsets of texture features were selected from the multi-dimensional feature space. A backpropagation artificial neural network (ANN) classifier was trained and tested with a leave-one-case-out method to recognize the malignant or benign microcalcification clusters. The performance of the ANN was analysed with receiver operating characteristic (ROC) methodology. It was found that a subset of six texture features provided the highest classification accuracy among the feature sets studied. The ANN classifier achieved an area under the ROC curve of 0.88. By setting an appropriate decision threshold, 11 of the 28 benign cases were correctly identified (39% specificity) without missing any malignant cases (100% sensitivity) for patients who had undergone biopsy. This preliminary result indicates that computerized texture analysis can extract mammographic information that is not apparent by visual inspection. The computer-extracted texture information may be used to assist in mammographic interpretation, with the potential to reduce biopsies of benign cases and improve the positive predictive value of mammography.