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Molina-Espeja P, Viña-Gonzalez J, Gomez-Fernandez BJ, Martin-Diaz J, Garcia-Ruiz E, Alcalde M. Beyond the outer limits of nature by directed evolution. Biotechnol Adv 2016; 34:754-767. [PMID: 27064127 DOI: 10.1016/j.biotechadv.2016.03.008] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2016] [Revised: 03/22/2016] [Accepted: 03/27/2016] [Indexed: 01/19/2023]
Abstract
For more than thirty years, biotechnology has borne witness to the power of directed evolution in designing molecules of industrial relevance. While scientists all over the world discuss the future of molecular evolution, dozens of laboratory-designed products are being released with improved characteristics in terms of turnover rates, substrate scope, catalytic promiscuity or stability. In this review we aim to present the most recent advances in this fascinating research field that are allowing us to surpass the limits of nature and apply newly gained attributes to a range of applications, from gene therapy to novel green processes. The use of directed evolution in non-natural environments, the generation of catalytic promiscuity for non-natural reactions, the insertion of unnatural amino acids into proteins or the creation of unnatural DNA, is described comprehensively, together with the potential applications in bioremediation, biomedicine and in the generation of new bionanomaterials. These successful case studies show us that the limits of directed evolution will be defined by our own imagination, and in some cases, stretching beyond that.
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Affiliation(s)
- Patricia Molina-Espeja
- Department of Biocatalysis, Institute of Catalysis, CSIC, Cantoblanco, 28049 Madrid, Spain
| | - Javier Viña-Gonzalez
- Department of Biocatalysis, Institute of Catalysis, CSIC, Cantoblanco, 28049 Madrid, Spain
| | | | - Javier Martin-Diaz
- Department of Biocatalysis, Institute of Catalysis, CSIC, Cantoblanco, 28049 Madrid, Spain
| | - Eva Garcia-Ruiz
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, 600 South Mathews Ave, Urbana, IL 61801, USA; Institute for Genomic Biology, University of Illinois at Urbana-Champaign, 600 South Mathews Ave, Urbana, IL 61801, USA
| | - Miguel Alcalde
- Department of Biocatalysis, Institute of Catalysis, CSIC, Cantoblanco, 28049 Madrid, Spain.
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Gonzalez-Bonet A, Kaufman G, Yang Y, Wong C, Jackson A, Huyang G, Bowen R, Sun J. Preparation of Dental Resins Resistant to Enzymatic and Hydrolytic Degradation in Oral Environments. Biomacromolecules 2015; 16:3381-8. [PMID: 26358180 DOI: 10.1021/acs.biomac.5b01069] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
The short average service life of traditional dental composite restorative materials and increasing occurrence of secondary caries adjacent to composite restorations and sealants are necessitating the development of new, longer lasting compositions. Novel monomers and their polymers, reinforcing fillers, and adhesive components are needed. The goal of this research is to develop resin systems for use in restorations, sealants, and other dental services that are superior in properties and endurance to currently used bisphenol A glycidyl dimethacrylate/triethylene glycol dimethacrylate (Bis-GMA/TEGDMA) and urethane-dimethacrylate products. Ether-based monomers and their polymers that were not susceptible to enzymatic or hydrolytic degradation were prepared and characterized. They showed no degradation under hydrolytic and enzymatic challenges, whereas the hydrolysis of ester links weakened contemporary resins within 16 days under these challenges. The success of the ether-based materials is promising in making durable systems that are subjected to long-term biochemical and hydrolytic challenges in oral environments.
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Affiliation(s)
- Andres Gonzalez-Bonet
- Dr. Anthony Volpe Research Center, American Dental Association Foundation, National Institute of Standards and Technology , Gaithersburg, Maryland 20899, United States
| | - Gili Kaufman
- Dr. Anthony Volpe Research Center, American Dental Association Foundation, National Institute of Standards and Technology , Gaithersburg, Maryland 20899, United States
| | - Yin Yang
- Dr. Anthony Volpe Research Center, American Dental Association Foundation, National Institute of Standards and Technology , Gaithersburg, Maryland 20899, United States
| | - Christopher Wong
- Dr. Anthony Volpe Research Center, American Dental Association Foundation, National Institute of Standards and Technology , Gaithersburg, Maryland 20899, United States
| | - Abigail Jackson
- Dr. Anthony Volpe Research Center, American Dental Association Foundation, National Institute of Standards and Technology , Gaithersburg, Maryland 20899, United States
| | - George Huyang
- Dr. Anthony Volpe Research Center, American Dental Association Foundation, National Institute of Standards and Technology , Gaithersburg, Maryland 20899, United States
| | - Rafael Bowen
- Dr. Anthony Volpe Research Center, American Dental Association Foundation, National Institute of Standards and Technology , Gaithersburg, Maryland 20899, United States
| | - Jirun Sun
- Dr. Anthony Volpe Research Center, American Dental Association Foundation, National Institute of Standards and Technology , Gaithersburg, Maryland 20899, United States
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Dwyer M, Javor S, Ryan DA, Smith EM, Wang B, Zhang J, Cashman JR. Novel human butyrylcholinesterase variants: toward organophosphonate detoxication. Biochemistry 2014; 53:4476-87. [PMID: 24902043 PMCID: PMC4100784 DOI: 10.1021/bi500491w] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
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Human
butyrylcholinesterase (hBChE) is currently being developed
as a detoxication enzyme for stoichiometric binding and/or catalytic
hydrolysis of organophosphates. Herein, we describe the use of a molecular
evolution method to develop novel hBChE variants with increased resistance
to stereochemically defined nerve agent model compounds of soman,
sarin, and cyclosarin. Novel hBChE variants (Y332S, D340H, and Y332S/D340H)
were identified with an increased resistance to nerve agent model
compounds that retained robust intrinsic catalytic efficiency. Molecular
dynamics simulations of these variants revealed insights into the
mechanism by which these structural changes conferred nerve agent
model compound resistance.
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Affiliation(s)
- Mary Dwyer
- Human BioMolecular Research Institute , 5310 Eastgate Mall, San Diego, California 92121, United States
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