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For: Yokoyama S, Altun A, Jia H, Yang H, Koyama T, Faggionato D, Liu Y, Starmer WT. Adaptive evolutionary paths from UV reception to sensing violet light by epistatic interactions. Sci Adv 2015;1:e1500162. [PMID: 26601250 PMCID: PMC4643761 DOI: 10.1126/sciadv.1500162] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/12/2015] [Accepted: 08/02/2015] [Indexed: 06/05/2023]
Number Cited by Other Article(s)
1
Frazer SA, Baghbanzadeh M, Rahnavard A, Crandall KA, Oakley TH. Discovering genotype-phenotype relationships with machine learning and the Visual Physiology Opsin Database (VPOD). Gigascience 2024;13:giae073. [PMID: 39460934 PMCID: PMC11512451 DOI: 10.1093/gigascience/giae073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Revised: 06/25/2024] [Accepted: 09/01/2024] [Indexed: 10/28/2024]  Open
2
Smedley GD, McElroy KE, Feller KD, Serb JM. Additive and epistatic effects influence spectral tuning in molluscan retinochrome opsin. J Exp Biol 2022;225:275511. [DOI: 10.1242/jeb.242929] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Accepted: 04/26/2022] [Indexed: 11/20/2022]
3
Hensley NM, Ellis EA, Leung NY, Coupart J, Mikhailovsky A, Taketa DA, Tessler M, Gruber DF, De Tomaso AW, Mitani Y, Rivers TJ, Gerrish GA, Torres E, Oakley TH. Selection, drift, and constraint in cypridinid luciferases and the diversification of bioluminescent signals in sea fireflies. Mol Ecol 2021;30:1864-1879. [PMID: 33031624 PMCID: PMC11629831 DOI: 10.1111/mec.15673] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Revised: 09/09/2020] [Accepted: 09/18/2020] [Indexed: 02/07/2023]
4
DeLeo DM, Bracken-Grissom HD. Lighting the way: Forces driving the diversification of bioluminescent signalling in sea fireflies. Mol Ecol 2021;30:1747-1750. [PMID: 33709451 DOI: 10.1111/mec.15880] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2021] [Accepted: 03/03/2021] [Indexed: 11/29/2022]
5
Chen J, Wong KC. Analyzing High-Order Epistasis from Genotype-Phenotype Maps Using 'Epistasis' Package. Methods Mol Biol 2021;2212:265-275. [PMID: 33733361 DOI: 10.1007/978-1-0716-0947-7_16] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
6
Yokoyama S, Jia H. Origin and adaptation of green-sensitive (RH2) pigments in vertebrates. FEBS Open Bio 2020;10:873-882. [PMID: 32189477 PMCID: PMC7193153 DOI: 10.1002/2211-5463.12843] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2020] [Revised: 02/20/2020] [Accepted: 03/16/2020] [Indexed: 12/12/2022]  Open
7
Sailer ZR, Harms MJ. High-order epistasis shapes evolutionary trajectories. PLoS Comput Biol 2017;13:e1005541. [PMID: 28505183 PMCID: PMC5448810 DOI: 10.1371/journal.pcbi.1005541] [Citation(s) in RCA: 65] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2016] [Revised: 05/30/2017] [Accepted: 04/24/2017] [Indexed: 01/02/2023]  Open
8
Detecting High-Order Epistasis in Nonlinear Genotype-Phenotype Maps. Genetics 2017;205:1079-1088. [PMID: 28100592 PMCID: PMC5340324 DOI: 10.1534/genetics.116.195214] [Citation(s) in RCA: 89] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2016] [Accepted: 01/09/2017] [Indexed: 11/18/2022]  Open
9
Yokoyama S, Tada T, Liu Y, Faggionato D, Altun A. A simple method for studying the molecular mechanisms of ultraviolet and violet reception in vertebrates. BMC Evol Biol 2016;16:64. [PMID: 27001075 PMCID: PMC4802639 DOI: 10.1186/s12862-016-0637-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2015] [Accepted: 03/16/2016] [Indexed: 02/03/2023]  Open
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