Recent Changes in Atmospheric Carbon Monoxide

Carbon Monoxide-Sensing Transcription Factors: Regulators of Microbial Carbon Monoxide Oxidation Pathway Gene Expression

Carbon monoxide (CO) serves as a source of energy and carbon for a diverse set of microbes found in anaerobic and aerobic environments. The enzymes that bacteria and archaea use to oxidize CO depend upon complex metallocofactors that require accessory proteins for assembly and proper function. This complexity comes at a high energetic cost and necessitates strict regulation of CO metabolic pathways in facultative CO metabolizers to ensure that gene expression occurs only when CO concentrations and redox conditions are appropriate. In this review, we examine two known heme-dependent transcription factors, CooA and RcoM, that regulate inducible CO metabolism pathways in anaerobic and aerobic microorganisms. We provide an analysis of the known physiological and genomic contexts of these sensors and employ this analysis to contextualize known biochemical properties. In addition, we describe a growing list of putative transcription factors associated with CO metabolism that potentially use cofactors other than heme to sense CO.

Trace gas oxidizers are widespread and active members of soil microbial communities

Soil microorganisms globally are thought to be sustained primarily by organic carbon sources. Certain bacteria also consume inorganic energy sources such as trace gases, but they are presumed to be rare community members, except within some oligotrophic soils. Here we combined metagenomic, biogeochemical and modelling approaches to determine how soil microbial communities meet energy and carbon needs. Analysis of 40 metagenomes and 757 derived genomes indicated that over 70% of soil bacterial taxa encode enzymes to consume inorganic energy sources. Bacteria from 19 phyla encoded enzymes to use the trace gases hydrogen and carbon monoxide as supplemental electron donors for aerobic respiration. In addition, we identified a fourth phylum (Gemmatimonadota) potentially capable of aerobic methanotrophy. Consistent with the metagenomic profiling, communities within soil profiles from diverse habitats rapidly oxidized hydrogen, carbon monoxide and to a lesser extent methane below atmospheric concentrations. Thermodynamic modelling indicated that the power generated by oxidation of these three gases is sufficient to meet the maintenance needs of the bacterial cells capable of consuming them. Diverse bacteria also encode enzymes to use trace gases as electron donors to support carbon fixation. Altogether, these findings indicate that trace gas oxidation confers a major selective advantage in soil ecosystems, where availability of preferred organic substrates limits microbial growth. The observation that inorganic energy sources may sustain most soil bacteria also has broad implications for understanding atmospheric chemistry and microbial biodiversity in a changing world.

Study on CO data filtering approaches based on observations at two background stations in China

The identification of regional representative carbon monoxide (CO) measurements that are minimally influenced by local sources/sinks is essential to understand the characteristics of atmospheric CO over a certain region. In this study, three commonly used data filtering approaches were applied to atmospheric CO data obtained from 2010/2011 to 2017 at two World Meteorological Administration/Global Atmospheric Programme (WMO/GAW) regional stations (Lin'an, LAN and Shangdianzi, SDZ) in China, to study their applicability for individual stations. The three methods used were the meteorological conditions (MET), statistical approaches (robust extraction of baseline signal, REBS), and the time scale of the CO variations (standard deviations of the running mean, SDM). The results from the three methods displayed almost the same seasonal cycles at LAN but different variations at SDZ. They each extracted similar yearly CO growth rates at LAN, but there was a large difference at SDZ, with values of -10.6 ± 0.5, -2.2 ± 0.1, and - 23.5 ± 0.3 ppb yr^-1 for MET, REBS, and SDM, respectively. The slight decrease observed using REBS at SDZ was mainly due to the biased distribution of CO records, which was a purely statistical method that did not consider topography or meteorological conditions. Thus, the REBS method should be applied cautiously to CO observations at stations like SDZ. The SDM method may overestimate multi-year trends. Among the three approaches, MET may be the most suitable for filtering CO observation records, especially at stations like SDZ with special geographical and meteorological conditions in economically-developed regions.

Development of an imaging gas correlation spectrometry based mid-infrared camera for two-dimensional mapping of CO in vehicle exhausts

Real-time imaging of CO in vehicle exhaust was demonstrated using a gas correlation spectrometry based mid-infrared camera for the first time. The novel gas-correlation imaging technique is used to eliminate the spectral interferences from background radiation and other major combustion products, and reduce the influences of the optical jitter and temperature variations, thereby identifying and quantifying the gas. We take several spectral factors into account for the instrument design, concentration calibration and data evaluation, including atmospheric transmission, radiation interference, as well as the spectral response of infrared camera, filter and gas cell. A calibration method based on the molecular spectroscopy and radiative transfer equation is developed to identify the numerical relationship between the CO concentration × length and the measured image intensity. Two-dimensional CO distribution of vehicle exhaust with a time resolution of 50 Hz and detection limit of 20 ppm × meter is achieved when the distance between optical equipment and engine nozzle is 3 m. The gas correlation spectrometry based mid-infrared camera shows a great potential as a future technique to monitor vehicle pollution emissions quantitatively and visually.

Oceanic source strength of carbon monoxide on the basis of basin-wide observations in the Atlantic

We measured the carbon monoxide (CO) concentrations in the marine boundary layer and the surface waters of the Atlantic Ocean from 50°N to 50°S during the UK Atlantic Meridional Transect expedition (AMT-7) in October 1998, covering the open ocean and coastal regions. Throughout the cruise track, atmospheric CO concentrations continually decreased southwards in the northern hemisphere with sporadic low and high concentrations encountered. South of the intertropical convergence zone (ITCZ) atmospheric CO was enhanced by ∼10 ppb compared to north of the ITCZ due likely to biomass burning emissions prevailing in the tropical continents. The remainder of the southern hemisphere remains nearly invariable except for the vicinity of Rio de la Plata. The surface seawater was supersaturated everywhere along the track and its saturation anomaly oscillated up to 90, exhibiting a typical diurnal cycle. The maximal dissolved CO concentration in the diurnal cycle appeared 2-5 hours behind the local maximum of solar insolation in the open ocean and the time lag further increased in the coastal region. The global ocean flux of CO to the atmosphere was estimated to be 14 Tg(CO) a(-1) within the range of 4-24 Tg(CO) a(-1). This is within uncertainty almost identical to what was estimated on the basis of the basin-wide observations in the Pacific and the Atlantic, but more than ∼4 times lower than the values appeared in the Intergovernmental Panel on Climate Change (IPCC) reports.

Carbon monoxide oxidation by bacteria associated with the roots of freshwater macrophytes

The potential rates and control of aerobic root-associated carbon monoxide (CO) consumption were assessed by using excised plant roots from five common freshwater macrophytes. Kinetic analyses indicated that the maximum potential uptake velocities for CO consumption ranged from 0.4 to 2.7 &mgr;mol of CO g (dry weight)-1 h-1 for the five species. The observed rates were comparable to previously reported rates of root-associated methane uptake. The apparent half-saturation constants for CO consumption ranged from 50 to 370 nM CO; these values are considerably lower than the values obtained for methane uptake. The CO consumption rates reached maximum values at temperatures between 27 and 32 degreesC, and there was a transition to CO production at >/=44 degreesC, most likely as a result of thermochemical organic matter decomposition. Incubation of roots with organic substrates (e.g., 5 mM syringic acid, glucose, alanine, and acetate) dramatically reduced the rate of CO consumption, perhaps reflecting a shift in metabolism by facultative CO oxidizers. Based on responses to a suite of antibiotics, most of the CO consumption (about 90%) was due to eubacteria rather than fungi or other eucaryotes. Based on the results of acetylene inhibition experiments, methanotrophs and ammonia oxidizers were not active CO consumers.

Changes in tropospheric composition and air quality

Reductions in stratospheric ozone (O3) cause increased penetration of ultraviolet-B (UV-B) radiation to the troposphere, and therefore increases in the chemical activity in the lower atmosphere (the troposphere). Tropospheric ozone levels are sensitive to local concentrations of nitrogen oxides (NOx) and hydrocarbons. Model studies suggest that additional UV-B radiation reduces tropospheric ozone in clean environments (low NOx), and increases tropospheric ozone in polluted areas (high NOx). Assuming other factors remain constant, additional UV-B will increase the rate at which primary pollutants are removed from the troposphere. Increased UV-B is expected to increase the concentration of hydroxyl radicals (OH) and result in faster removal of pollutants such as carbon monoxide (CO), methane (CH4), non-methane hydrocarbons (NMHCs), sulfur and nitrogen oxides, hydrochlorofluorocarbons (HCFCs), and hydrofluorocarbons (HFCs). Concentrations of peroxy radicals (both inorganic and organic) are expected to increase, leading to higher atmospheric levels of hydrogen peroxide (H2O2) and organic peroxides. The effects of UV-B increases on tropospheric O3, OH, methane, CO, and possibly other tropospheric constituents, while not negligible, will be difficult to detect because the concentrations of these species are also influenced by many other variable factors (e.g., emissions). Trifluoroacetic acid (TFA, CF3COOH) is produced in the atmosphere by the degradation of HCFC-123 (CF3CHCl2), HCFC-124 (CF3CHFCl), and HFC-134a (CF3CH2F), which are used as substitutes for ozone-depleting substances. The atmospheric oxidation mechanisms of these replacement compounds are well established. Reported measurements of TFA in rain, rivers, lakes, and oceans show it to be a ubiquitous component of the hydrosphere, present at levels much higher than can be explained by reported sources. The levels of TFA produced by the atmospheric degradation of HFCs and HCFCs emitted up to the year 2020 are estimated to be orders of magnitude below those of concern, and to make only a minor contribution to the current environmental burden of TFA. No significant effects on humans or the environment have been identified from TFA produced by atmospheric degradation of HCFCs and HFCs. Numerous standard short-term studies have shown that TFA has, at most, moderate toxicity.