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Leonov AV, Zaripov DU, Dokin RY, Losev TV, Gerasimov IS, Medvedev MG. The Source of Some Empirical Density Functionals van der Waals Forces. J Phys Chem A 2025; 129:2806-2811. [PMID: 40053330 DOI: 10.1021/acs.jpca.4c07586] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/21/2025]
Abstract
Density functional approximations became indispensable tools in many fields of chemistry due to their excellent cost-to-accuracy ratio. Still, consideration is required to select an appropriate approximation for each task. Highly parameterized Minnesota functionals are known for their excellent accuracy in reproducing thermochemical properties and, in particular, weak medium-range interactions. Here, we show that the latter ability of many Minnesota functionals comes from exploiting the basis set incompleteness. This finding shows how empirical functionals can trick their makers by learning to operate in a physics-defying way and likely explains the previously observed tendency of Minnesota functionals to distort electron densities. Thus, satisfaction of the Hellmann-Feynman theorem should be considered an important test and parameterization goal for the future generations of highly parameterized density functionals, including those based on neural networks.
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Affiliation(s)
- A V Leonov
- M. V. Lomonosov Moscow State University, Leninskiye Gory, 1, Moscow 119991, Russia
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect, 47, Moscow 119991, Russia
| | - D U Zaripov
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect, 47, Moscow 119991, Russia
- HSE University, Myasnitskaya Ulitsa, 20, Moscow 101000, Russia
| | - R Yu Dokin
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect, 47, Moscow 119991, Russia
| | - T V Losev
- M. V. Lomonosov Moscow State University, Leninskiye Gory, 1, Moscow 119991, Russia
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect, 47, Moscow 119991, Russia
| | - I S Gerasimov
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect, 47, Moscow 119991, Russia
| | - M G Medvedev
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect, 47, Moscow 119991, Russia
- HSE University, Myasnitskaya Ulitsa, 20, Moscow 101000, Russia
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2
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Mi W, Luo K, Trickey SB, Pavanello M. Orbital-Free Density Functional Theory: An Attractive Electronic Structure Method for Large-Scale First-Principles Simulations. Chem Rev 2023; 123:12039-12104. [PMID: 37870767 DOI: 10.1021/acs.chemrev.2c00758] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2023]
Abstract
Kohn-Sham Density Functional Theory (KSDFT) is the most widely used electronic structure method in chemistry, physics, and materials science, with thousands of calculations cited annually. This ubiquity is rooted in the favorable accuracy vs cost balance of KSDFT. Nonetheless, the ambitions and expectations of researchers for use of KSDFT in predictive simulations of large, complicated molecular systems are confronted with an intrinsic computational cost-scaling challenge. Particularly evident in the context of first-principles molecular dynamics, the challenge is the high cost-scaling associated with the computation of the Kohn-Sham orbitals. Orbital-free DFT (OFDFT), as the name suggests, circumvents entirely the explicit use of those orbitals. Without them, the structural and algorithmic complexity of KSDFT simplifies dramatically and near-linear scaling with system size irrespective of system state is achievable. Thus, much larger system sizes and longer simulation time scales (compared to conventional KSDFT) become accessible; hence, new chemical phenomena and new materials can be explored. In this review, we introduce the historical contexts of OFDFT, its theoretical basis, and the challenge of realizing its promise via approximate kinetic energy density functionals (KEDFs). We review recent progress on that challenge for an array of KEDFs, such as one-point, two-point, and machine-learnt, as well as some less explored forms. We emphasize use of exact constraints and the inevitability of design choices. Then, we survey the associated numerical techniques and implemented algorithms specific to OFDFT. We conclude with an illustrative sample of applications to showcase the power of OFDFT in materials science, chemistry, and physics.
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Affiliation(s)
- Wenhui Mi
- Key Laboratory of Material Simulation Methods & Software of Ministry of Education, College of Physics, Jilin University, Changchun 130012, PR China
- State Key Laboratory of Superhard Materials, Jilin University, Changchun 130012, PR China
- International Center of Future Science, Jilin University, Changchun 130012, PR China
| | - Kai Luo
- Department of Applied Physics, Nanjing University of Science and Technology, Nanjing 210094, PR China
| | - S B Trickey
- Quantum Theory Project, Department of Physics and Department of Chemistry, University of Florida, Gainesville, Florida 32611, United States
| | - Michele Pavanello
- Department of Physics and Department of Chemistry, Rutgers University, Newark, New Jersey 07102, United States
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3
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Huan Lew-Yee JF, Piris M, Del Campo JM. Outstanding improvement in removing the delocalization error by global natural orbital functional. J Chem Phys 2023; 158:084110. [PMID: 36859086 DOI: 10.1063/5.0137378] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023] Open
Abstract
This work assesses the performance of the recently proposed global natural orbital functional (GNOF) against the charge delocalization error. GNOF provides a good balance between static and dynamic electronic correlations leading to accurate total energies while preserving spin, even for systems with a highly multi-configurational character. Several analyses were applied to the functional, namely, (i) how the charge is distributed in super-systems of two fragments, (ii) the stability of ionization potentials while increasing the system size, and (iii) potential energy curves of a neutral and charged diatomic system. GNOF was found to practically eliminate the charge delocalization error in many of the studied systems or greatly improve the results obtained previously with PNOF7.
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Affiliation(s)
- Juan Felipe Huan Lew-Yee
- Departamento de Física y Química Teórica, Facultad de Química, Universidad Nacional Autónoma de México, Mexico City C.P. 04510, Mexico
| | - Mario Piris
- Donostia International Physics Center (DIPC), 20018 Donostia, Euskadi, Spain; Euskal Herriko Unibertsitatea (UPV/EHU), PK 1072, 20080 Donostia, Euskadi, Spain; and Basque Foundation for Science (IKERBASQUE), 48009 Bilbao, Euskadi, Spain
| | - Jorge M Del Campo
- Departamento de Física y Química Teórica, Facultad de Química, Universidad Nacional Autónoma de México, Mexico City C.P. 04510, Mexico
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Guo J, Chen Z, Liu Z, Li X, Xie Z, Wang Z, Wang Y. Neural network training method for materials science based on multi-source databases. Sci Rep 2022; 12:15326. [PMID: 36096926 PMCID: PMC9468338 DOI: 10.1038/s41598-022-19426-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2022] [Accepted: 08/29/2022] [Indexed: 12/02/2022] Open
Abstract
The fourth paradigm of science has achieved great success in material discovery and it highlights the sharing and interoperability of data. However, most material data are scattered among various research institutions, and a big data transmission will consume significant bandwidth and tremendous time. At the meanwhile, some data owners prefer to protect the data and keep their initiative in the cooperation. This dilemma gradually leads to the “data island” problem, especially in material science. To attack the problem and make full use of the material data, we propose a new strategy of neural network training based on multi-source databases. In the whole training process, only model parameters are exchanged and no any external access or connection to the local databases. We demonstrate its validity by training a model characterizing material structure and its corresponding formation energy, based on two and four local databases, respectively. The results show that the obtained model accuracy trained by this method is almost the same to that obtained from a single database combining all the local ones. Moreover, different communication frequencies between the client and server are also studied to improve the model training efficiency, and an optimal frequency is recommended.
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Affiliation(s)
- Jialong Guo
- Computer Network Information Center, Chinese Academy of Sciences, Beijing, 100083, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Ziyi Chen
- Computer Network Information Center, Chinese Academy of Sciences, Beijing, 100083, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Zhiwei Liu
- Computer Network Information Center, Chinese Academy of Sciences, Beijing, 100083, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xianwei Li
- China Petroleum Pipeline Engineering Co., Ltd., International, Langfang, 065000, Hebei, China
| | - Zhiyuan Xie
- Department of Physics, Renmin University of China, Beijing, 100872, China
| | - Zongguo Wang
- Computer Network Information Center, Chinese Academy of Sciences, Beijing, 100083, China. .,University of Chinese Academy of Sciences, Beijing, 100049, China.
| | - Yangang Wang
- Computer Network Information Center, Chinese Academy of Sciences, Beijing, 100083, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
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Bryenton KR, Adeleke AA, Dale SG, Johnson ER. Delocalization error: The greatest outstanding challenge in density‐functional theory. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2022. [DOI: 10.1002/wcms.1631] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Kyle R. Bryenton
- Department of Physics and Atmospheric Science Dalhousie University Halifax Nova Scotia Canada
| | | | - Stephen G. Dale
- Queensland Micro‐ and Nanotechnology Centre Griffith University Nathan Queensland Australia
| | - Erin R. Johnson
- Department of Physics and Atmospheric Science Dalhousie University Halifax Nova Scotia Canada
- Department of Chemistry Dalhousie University Halifax Nova Scotia Canada
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Zhang K, Wasserman A. Split electrons in partition density functional theory. J Chem Phys 2022; 156:224113. [PMID: 35705418 DOI: 10.1063/5.0091024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Partition density functional theory is a density embedding method that partitions a molecule into fragments by minimizing the sum of fragment energies subject to a local density constraint and a global electron-number constraint. To perform this minimization, we study a two-stage procedure in which the sum of fragment energies is lowered when electrons flow from fragments of lower electronegativity to fragments of higher electronegativity. The global minimum is reached when all electronegativities are equal. The non-integer fragment populations are dealt with in two different ways: (1) An ensemble approach (ENS) that involves averaging over calculations with different numbers of electrons (always integers) and (2) a simpler approach that involves fractionally occupying orbitals (FOO). We compare and contrast these two approaches and examine their performance in some of the simplest systems where one can transparently apply both, including simple models of heteronuclear diatomic molecules and actual diatomic molecules with two and four electrons. We find that, although both ENS and FOO methods lead to the same total energy and density, the ENS fragment densities are less distorted than those of FOO when compared to their isolated counterparts, and they tend to retain integer numbers of electrons. We establish the conditions under which the ENS populations can become fractional and observe that, even in those cases, the total charge transferred is always lower in ENS than in FOO. Similarly, the FOO fragment dipole moments provide an upper bound to the ENS dipoles. We explain why and discuss the implications.
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Affiliation(s)
- Kui Zhang
- Department of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, USA
| | - Adam Wasserman
- Department of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, USA
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Abstract
Machine learning (ML) is believed to have enabled a paradigm shift in materials research, and in practice, ML has demonstrated its power in speeding up the cost-efficient discovery of new materials and autonomizing materials laboratories. In this Perspective, current research progress in materials data which are the backbones of ML are reviewed, focusing on high-throughput data generation, standardized data storage, and data representation. More importantly, the challenging issues in materials data that should be overcome to unlock the full potential of ML in materials research and development, including classic 5V (volume, velocity, variety, veracity, and value) issues, 3M (multicomponent, multiscale, and multistage) challenges, co-mining of experimental and computational data, and materials data toward transferable/explainable ML or causal ML, are discussed.
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Affiliation(s)
- Linggang Zhu
- School of Materials Science and Engineering, Beihang University, Beijing 100191, China
- Center for Integrated Computational Materials Engineering, International Research Institute for Multidisciplinary Science, Beihang University, Beijing 100191, China
| | - Jian Zhou
- School of Materials Science and Engineering, Beihang University, Beijing 100191, China
- Center for Integrated Computational Materials Engineering, International Research Institute for Multidisciplinary Science, Beihang University, Beijing 100191, China
| | - Zhimei Sun
- School of Materials Science and Engineering, Beihang University, Beijing 100191, China
- Center for Integrated Computational Materials Engineering, International Research Institute for Multidisciplinary Science, Beihang University, Beijing 100191, China
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Furness JW, Kaplan AD, Ning J, Perdew JP, Sun J. Construction of meta-GGA functionals through restoration of exact constraint adherence to regularized SCAN functionals. J Chem Phys 2022; 156:034109. [DOI: 10.1063/5.0073623] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Affiliation(s)
- James W. Furness
- Department of Physics and Engineering Physics, Tulane University, New Orleans, Louisiana 70118, USA
| | - Aaron D. Kaplan
- Department of Physics, Temple University, Philadelphia, Pennsylvania 19122, USA
| | - Jinliang Ning
- Department of Physics and Engineering Physics, Tulane University, New Orleans, Louisiana 70118, USA
| | - John P. Perdew
- Department of Physics, Temple University, Philadelphia, Pennsylvania 19122, USA
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, USA
| | - Jianwei Sun
- Department of Physics and Engineering Physics, Tulane University, New Orleans, Louisiana 70118, USA
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