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Ai M, Lin Y, Zhong X, Zou Z, Diao P, Zhang Y, Chen J, Zhao P, Zhu Z. Design, synthesis and evaluation of novel cycloalkylthiophene-based aminopyrimidine derivatives as potent PLK1 inhibitors. Bioorg Med Chem Lett 2025; 124:130260. [PMID: 40311783 DOI: 10.1016/j.bmcl.2025.130260] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2025] [Revised: 03/21/2025] [Accepted: 04/28/2025] [Indexed: 05/03/2025]
Abstract
PLK1 plays a pivotal role in cell-cycle regulation and has been well-characterized as a promising target for cancer therapy. Here, we synthesized a series of fused-thiophene based aminopyrimidine derivatives, and discovered a novel and potent PLK1 inhibitor compound 7n with an IC50 value of 38.5 nM. Analogue 7n exhibited remarkable antiproliferative efficacy toward HepG2, Huh7, H1299, and A549 cells, and hasn't any noticeable cytotoxic activity on the non-tumoural cell line HEK-293. Further mechanism studies indicated 7n arrested the cell cycle at the G2/M phase and induced apoptosis in HepG2 cells with a concentration-dependent manner. Molecular docking presented that 7n could occupy well the ATP-binding site of PLK1 with a U-shaped conformation. Collectively, these results provide new insights into the further development of fused-thiophene based aminopyrimidines as PLK1 inhibitors.
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Affiliation(s)
- Meixue Ai
- Southern Medical University Hospital of Integrated Traditional Chinese and Western Medicine,Southern Medical University, Guangzhou 510315, PR China
| | - Yukang Lin
- Guangdong Provincial Key Laboratory of New Drug Screening, School of Pharmaceutical Science, Southern Medical University, Guangzhou 510515, PR China
| | - Xiaoyu Zhong
- Southern Medical University Hospital of Integrated Traditional Chinese and Western Medicine,Southern Medical University, Guangzhou 510315, PR China
| | - Zhongkai Zou
- Guangdong Provincial Key Laboratory of New Drug Screening, School of Pharmaceutical Science, Southern Medical University, Guangzhou 510515, PR China
| | - Pengcheng Diao
- Guangdong Provincial Key Laboratory of New Drug Screening, School of Pharmaceutical Science, Southern Medical University, Guangzhou 510515, PR China
| | - Yanting Zhang
- Guangdong Provincial Key Laboratory of New Drug Screening, School of Pharmaceutical Science, Southern Medical University, Guangzhou 510515, PR China
| | - Jingkao Chen
- Guangdong Provincial Key Laboratory of New Drug Screening, School of Pharmaceutical Science, Southern Medical University, Guangzhou 510515, PR China
| | - Peiliang Zhao
- Guangdong Provincial Key Laboratory of New Drug Screening, School of Pharmaceutical Science, Southern Medical University, Guangzhou 510515, PR China.
| | - Zhibo Zhu
- Southern Medical University Hospital of Integrated Traditional Chinese and Western Medicine,Southern Medical University, Guangzhou 510315, PR China.
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Zeng Y, Wang M, Gent JI, Dawe RK. Increased maize chromosome number by engineered chromosome fission. SCIENCE ADVANCES 2025; 11:eadw3433. [PMID: 40397737 PMCID: PMC12094224 DOI: 10.1126/sciadv.adw3433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/28/2025] [Accepted: 04/17/2025] [Indexed: 05/23/2025]
Abstract
Activation of synthetic centromeres on chromosome 4 in maize leads to its breakage and formation of trisomic fragments called neochromosomes. A limitation of neochromosomes is their low and unpredictable transmission rates due to trisomy. Here, we report that selecting for dicentric recombinants through male crosses uncovers stabilized chromosome 4 fission events, which split it into 4a-4b complementary chromosome pairs, where 4a carries a native centromere and 4b carries a synthetic one. The cells rapidly stabilized chromosome ends by de novo telomere formation, and the new centromeres spread among genes without altering their expression. When both 4a and 4b chromosomes were made homozygous, they segregated through meiosis indistinguishably from wild type and gave rise to healthy plants with normal seed set, indicating that the synthetic centromere was fully functional. This work leverages synthetic centromeres to engineer chromosome fission, raising the diploid chromosome number of maize from 20 to 22.
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Affiliation(s)
- Yibing Zeng
- Department of Genetics, University of Georgia, Athens, GA 30602, USA
| | - Mingyu Wang
- Institute of Bioinformatics, University of Georgia, Athens, GA 30602 USA
| | - Jonathan I. Gent
- Department of Plant Biology, University of Georgia, Athens, GA 30602, USA
| | - R. Kelly Dawe
- Department of Genetics, University of Georgia, Athens, GA 30602, USA
- Institute of Bioinformatics, University of Georgia, Athens, GA 30602 USA
- Department of Plant Biology, University of Georgia, Athens, GA 30602, USA
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Ali-Ahmad A, Mors M, Carrer M, Li X, Bilokapić S, Halić M, Cascella M, Sekulić N. Non-nucleosomal (CENP-A/H4) 2 - DNA complexes as a possible platform for centromere organization. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2024.12.31.630874. [PMID: 39803555 PMCID: PMC11722257 DOI: 10.1101/2024.12.31.630874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/23/2025]
Abstract
The centromere is a part of the chromosome that is essential for the even segregation of duplicated chromosomes during cell division. It is epigenetically defined by the presence of the histone H3 variant CENP-A. CENP-A associates specifically with a group of 16 proteins that form the centromere-associated network of proteins (CCAN). In mitosis, the kinetochore forms on the CCAN to connect the duplicated chromosomes to the microtubules protruding from the cell poles. Previous studies have shown that CENP-A replaces H3 in nucleosomes, and recently the structures of CENP-A-containing nucleosomes in complex with CCANs have been revealed, but they show only a limited interaction between CCANs and CENP-A. Here, we report the cryoEM structure of 2x(CENP-A/H4)2-di-tetramers assembled on DNA in the absence of H2A/H2B histone dimer and speculate how (CENP-A/H4)2-tetramers and -di-tetramers might serve as a platform for CCAN organization.
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Affiliation(s)
- Ahmad Ali-Ahmad
- Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, Faculty of Medicine, University of Oslo, Oslo 0318, Norway
| | - Mira Mors
- Department of Chemistry, University of Oslo, P.O. Box 1033, Blindern 0315, Norway
| | - Manuel Carrer
- Department of Chemistry, University of Oslo, P.O. Box 1033, Blindern 0315, Norway
| | - Xinmeng Li
- Department of Chemistry, University of Oslo, P.O. Box 1033, Blindern 0315, Norway
| | - Silvija Bilokapić
- Department of Structural Biology, St. Jude Children’s Research Hospital, Memphis, TN, USA
| | - Mario Halić
- Department of Structural Biology, St. Jude Children’s Research Hospital, Memphis, TN, USA
| | - Michele Cascella
- Department of Chemistry, University of Oslo, P.O. Box 1033, Blindern 0315, Norway
- Hylleraas Centre for Quantum Molecular Sciences, University of Oslo, P.O. Box 1033, Blindern, 0315 Oslo, Norway
| | - Nikolina Sekulić
- Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, Faculty of Medicine, University of Oslo, Oslo 0318, Norway
- Department of Chemistry, University of Oslo, P.O. Box 1033, Blindern 0315, Norway
- Department of Molecular Medicine, Institute of Basic Medical Sciences, Faculty of Medicine, University of Oslo, Oslo, Norway
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Transitions in development - an interview with Kara McKinley. Development 2024; 151:dev204456. [PMID: 39612291 DOI: 10.1242/dev.204456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2024]
Abstract
Kara McKinley is an Assistant Professor of Stem Cell and Regenerative Biology at Harvard University and a Freeman Hrabowski Scholar of the Howard Hughes Medical Institute. Kara's group studies the uterus to understand the biology of menstruation, advancing both reproductive health and regenerative biology through rodent models. We spoke to Kara over Teams to learn more about her transition to becoming a group leader, her insights on navigating the competitive tenure-track market in biology and her dedication to promoting gender diversity within academia.
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Conti D, Verza AE, Pesenti ME, Cmentowski V, Vetter IR, Pan D, Musacchio A. Role of protein kinase PLK1 in the epigenetic maintenance of centromeres. Science 2024; 385:1091-1097. [PMID: 39236163 DOI: 10.1126/science.ado5178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Accepted: 07/30/2024] [Indexed: 09/07/2024]
Abstract
The centromere, a chromosome locus defined by the histone H3-like protein centromeric protein A (CENP-A), promotes assembly of the kinetochore to bind microtubules during cell division. Centromere maintenance requires CENP-A to be actively replenished by dedicated protein machinery in the early G1 phase of the cell cycle to compensate for its dilution after DNA replication. Cyclin-dependent kinases (CDKs) limit CENP-A deposition to once per cell cycle and function as negative regulators outside of early G1. Antithetically, Polo-like kinase 1 (PLK1) promotes CENP-A deposition in early G1, but the molecular details of this process are still unknown. We reveal here a phosphorylation network that recruits PLK1 to the deposition machinery to control a conformational switch required for licensing the CENP-A deposition reaction. Our findings clarify how PLK1 contributes to the epigenetic maintenance of centromeres.
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Affiliation(s)
- Duccio Conti
- Department of Mechanistic Cell Biology, Max Planck Institute of Molecular Physiology, 44227 Dortmund, Germany
| | - Arianna Esposito Verza
- Department of Mechanistic Cell Biology, Max Planck Institute of Molecular Physiology, 44227 Dortmund, Germany
- Centre for Medical Biotechnology, Faculty of Biology, University of Duisburg-Essen, 45141 Essen, Germany
| | - Marion E Pesenti
- Department of Mechanistic Cell Biology, Max Planck Institute of Molecular Physiology, 44227 Dortmund, Germany
| | - Verena Cmentowski
- Department of Mechanistic Cell Biology, Max Planck Institute of Molecular Physiology, 44227 Dortmund, Germany
- Centre for Medical Biotechnology, Faculty of Biology, University of Duisburg-Essen, 45141 Essen, Germany
| | - Ingrid R Vetter
- Department of Mechanistic Cell Biology, Max Planck Institute of Molecular Physiology, 44227 Dortmund, Germany
| | - Dongqing Pan
- Department of Mechanistic Cell Biology, Max Planck Institute of Molecular Physiology, 44227 Dortmund, Germany
| | - Andrea Musacchio
- Department of Mechanistic Cell Biology, Max Planck Institute of Molecular Physiology, 44227 Dortmund, Germany
- Centre for Medical Biotechnology, Faculty of Biology, University of Duisburg-Essen, 45141 Essen, Germany
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