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For: Wickstrum JR, Skredenske JM, Kolin A, Jin DJ, Fang J, Egan SM. Transcription activation by the DNA-binding domain of the AraC family protein RhaS in the absence of its effector-binding domain. J Bacteriol 2007;189:4984-93. [PMID: 17513476 PMCID: PMC1951867 DOI: 10.1128/jb.00530-07] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
Number Cited by Other Article(s)
1
Kim N, Peng D, Sandoval N. Nucleotide-level characterization and improvement of l-arabinose- and l-rhamnose-inducible systems in E. coli using a high-throughput approach. Nucleic Acids Res 2025;53:gkaf224. [PMID: 40210244 PMCID: PMC11983282 DOI: 10.1093/nar/gkaf224] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2024] [Revised: 02/24/2025] [Accepted: 03/19/2025] [Indexed: 04/12/2025]  Open
2
Picard HR, Schwingen KS, Green LM, Shis DL, Egan SM, Bennett MR, Swint-Kruse L. Allosteric regulation within the highly interconnected structural scaffold of AraC/XylS homologs tolerates a wide range of amino acid changes. Proteins 2022;90:186-199. [PMID: 34369028 PMCID: PMC8671227 DOI: 10.1002/prot.26206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Revised: 07/20/2021] [Accepted: 08/02/2021] [Indexed: 01/03/2023]
3
Improved Dynamic Range of a Rhamnose-Inducible Promoter for Gene Expression in Burkholderia spp. Appl Environ Microbiol 2021;87:e0064721. [PMID: 34190606 DOI: 10.1128/aem.00647-21] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]  Open
4
Kelly CL, Taylor GM, Hitchcock A, Torres-Méndez A, Heap JT. A Rhamnose-Inducible System for Precise and Temporal Control of Gene Expression in Cyanobacteria. ACS Synth Biol 2018;7:1056-1066. [PMID: 29544054 DOI: 10.1021/acssynbio.7b00435] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
5
Hoffmann J, Altenbuchner J. Functional Characterization of the Mannitol Promoter of Pseudomonas fluorescens DSM 50106 and Its Application for a Mannitol-Inducible Expression System for Pseudomonas putida KT2440. PLoS One 2015;10:e0133248. [PMID: 26207762 PMCID: PMC4514859 DOI: 10.1371/journal.pone.0133248] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2015] [Accepted: 06/24/2015] [Indexed: 01/29/2023]  Open
6
Okuda K, Ito T, Goto M, Takenaka T, Hemmi H, Yoshimura T. Domain characterization of Bacillus subtilis GabR, a pyridoxal 5'-phosphate-dependent transcriptional regulator. J Biochem 2015;158:225-34. [PMID: 25911692 DOI: 10.1093/jb/mvv040] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2014] [Accepted: 03/15/2015] [Indexed: 11/13/2022]  Open
7
Finely tuned regulation of the aromatic amine degradation pathway in Escherichia coli. J Bacteriol 2013;195:5141-50. [PMID: 24013633 DOI: 10.1128/jb.00837-13] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
8
A two-component system (XydS/R) controls the expression of genes encoding CBM6-containing proteins in response to straw in Clostridium cellulolyticum. PLoS One 2013;8:e56063. [PMID: 23418511 PMCID: PMC3572039 DOI: 10.1371/journal.pone.0056063] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2012] [Accepted: 01/03/2013] [Indexed: 12/17/2022]  Open
9
Skredenske JM, Koppolu V, Kolin A, Deng J, Kettle B, Taylor B, Egan SM. Identification of a small-molecule inhibitor of bacterial AraC family activators. ACTA ACUST UNITED AC 2013;18:588-98. [PMID: 23364515 DOI: 10.1177/1087057112474690] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
10
Mahon V, Fagan RP, Smith SGJ. Snap denaturation reveals dimerization by AraC-like protein Rns. Biochimie 2012;94:2058-61. [PMID: 22627379 DOI: 10.1016/j.biochi.2012.05.014] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2012] [Accepted: 05/14/2012] [Indexed: 11/19/2022]
11
Parra MC, Collins CM. Mutational analysis of the N-terminal domain of UreR, the positive transcriptional regulator of urease gene expression. Microbiol Res 2012;167:433-44. [PMID: 22537874 DOI: 10.1016/j.micres.2012.03.005] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2011] [Revised: 12/22/2011] [Accepted: 03/12/2012] [Indexed: 10/28/2022]
12
Maciag A, Peano C, Pietrelli A, Egli T, De Bellis G, Landini P. In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements. Nucleic Acids Res 2011;39:5338-55. [PMID: 21398637 PMCID: PMC3141248 DOI: 10.1093/nar/gkr129] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]  Open
13
Gautam US, Chauhan S, Tyagi JS. Determinants outside the DevR C-terminal domain are essential for cooperativity and robust activation of dormancy genes in Mycobacterium tuberculosis. PLoS One 2011;6:e16500. [PMID: 21304599 PMCID: PMC3029386 DOI: 10.1371/journal.pone.0016500] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2010] [Accepted: 01/03/2011] [Indexed: 11/23/2022]  Open
14
Sequential XylS-CTD binding to the Pm promoter induces DNA bending prior to activation. J Bacteriol 2010;192:2682-90. [PMID: 20363935 DOI: 10.1128/jb.00165-10] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
15
Eppinger M, Worsham PL, Nikolich MP, Riley DR, Sebastian Y, Mou S, Achtman M, Lindler LE, Ravel J. Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium. J Bacteriol 2010;192:1685-99. [PMID: 20061468 PMCID: PMC2832528 DOI: 10.1128/jb.01518-09] [Citation(s) in RCA: 73] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2009] [Accepted: 12/25/2009] [Indexed: 11/20/2022]  Open
16
The AraC/XylS family activator RhaS negatively autoregulates rhaSR expression by preventing cyclic AMP receptor protein activation. J Bacteriol 2010;192:225-32. [PMID: 19854903 DOI: 10.1128/jb.00829-08] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
17
Mechanism of transcriptional activation by Pseudomonas aeruginosa ExsA. J Bacteriol 2009;191:6654-64. [PMID: 19717612 DOI: 10.1128/jb.00902-09] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
18
Gebhard S, Gaballa A, Helmann JD, Cook GM. Direct stimulus perception and transcription activation by a membrane-bound DNA binding protein. Mol Microbiol 2009;73:482-91. [PMID: 19602149 PMCID: PMC2752741 DOI: 10.1111/j.1365-2958.2009.06787.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
19
Functional domains of ExsA, the transcriptional activator of the Pseudomonas aeruginosa type III secretion system. J Bacteriol 2009;191:3811-21. [PMID: 19376850 DOI: 10.1128/jb.00002-09] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]  Open
20
Kolin A, Balasubramaniam V, Skredenske J, Wickstrum J, Egan SM. Differences in the mechanism of the allosteric l-rhamnose responses of the AraC/XylS family transcription activators RhaS and RhaR. Mol Microbiol 2008;68:448-61. [PMID: 18366439 PMCID: PMC2377013 DOI: 10.1111/j.1365-2958.2008.06164.x] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
21
Basturea GN, Bodero MD, Moreno ME, Munson GP. Residues near the amino terminus of Rns are essential for positive autoregulation and DNA binding. J Bacteriol 2008;190:2279-85. [PMID: 18223083 PMCID: PMC2293220 DOI: 10.1128/jb.01705-07] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2007] [Accepted: 01/13/2008] [Indexed: 11/20/2022]  Open
22
Roles of effectors in XylS-dependent transcription activation: intramolecular domain derepression and DNA binding. J Bacteriol 2008;190:3118-28. [PMID: 18296514 DOI: 10.1128/jb.01784-07] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
23
Domínguez-Cuevas P, Marín P, Marqués S, Ramos JL. XylS-Pm promoter interactions through two helix-turn-helix motifs: identifying XylS residues important for DNA binding and activation. J Mol Biol 2007;375:59-69. [PMID: 18005985 DOI: 10.1016/j.jmb.2007.10.047] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2007] [Revised: 10/15/2007] [Accepted: 10/16/2007] [Indexed: 11/25/2022]
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