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Bratanis E, Andersson T, Lood R, Bukowska-Faniband E. Biotechnological Potential of Bdellovibrio and Like Organisms and Their Secreted Enzymes. Front Microbiol 2020; 11:662. [PMID: 32351487 PMCID: PMC7174725 DOI: 10.3389/fmicb.2020.00662] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Accepted: 03/23/2020] [Indexed: 02/01/2023] Open
Abstract
Bdellovibrio and like organisms (BALOs) are obligate predatory bacteria that selectively prey on a broad range of Gram-negative bacteria, including multidrug-resistant human pathogens. Due to their unique lifestyle, they have been long recognized as a potential therapeutic and biocontrol agent. Research on BALOs has rapidly grown over the recent decade, resulting in many publications concerning molecular details of bacterial predation as well as applications thereof in medicine and biotechnology. This review summarizes the current knowledge on biotechnological potential of obligate predatory bacteria and their secreted enzymes.
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Affiliation(s)
- Eleni Bratanis
- Division of Infection Medicine, Department of Clinical Sciences, Lund University, Lund, Sweden
| | - Tilde Andersson
- Division of Infection Medicine, Department of Clinical Sciences, Lund University, Lund, Sweden
| | - Rolf Lood
- Division of Infection Medicine, Department of Clinical Sciences, Lund University, Lund, Sweden
| | - Ewa Bukowska-Faniband
- Division of Infection Medicine, Department of Clinical Sciences, Lund University, Lund, Sweden
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Feichtmayer J, Deng L, Griebler C. Antagonistic Microbial Interactions: Contributions and Potential Applications for Controlling Pathogens in the Aquatic Systems. Front Microbiol 2017; 8:2192. [PMID: 29184541 PMCID: PMC5694486 DOI: 10.3389/fmicb.2017.02192] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2017] [Accepted: 10/25/2017] [Indexed: 12/21/2022] Open
Abstract
Despite the active and intense treatment of wastewater, pathogenic microorganisms and viruses are frequently introduced into the aquatic environment. For most human pathogens, however, this is a rather hostile place, where starvation, continuous inactivation, and decay generally occur, rather than successful reproduction. Nevertheless, a great diversity of the pathogenic microorganisms can be detected, in particular, in the surface waters receiving wastewater. Pathogen survival depends majorly on abiotic factors such as irradiation, changes in water ionic strength, temperature, and redox state. In addition, inactivation is enhanced by the biotic interactions in the environment. Although knowledge of the antagonistic biotic interactions has been available since a long time, certain underlying processes and mechanisms still remain unclear. Others are well-appreciated and increasingly are applied to the present research. Our review compiles and discusses the presently known biotic interactions between autochthonous microbes and pathogens introduced into the aquatic environment, including protozoan grazing, virus-induced bacterial cell lysis, antimicrobial substances, and predatory bacteria. An overview is provided on the present knowledge, as well as on the obvious research gaps. Individual processes that appear promising for future applications in the aquatic environment are presented and discussed.
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Affiliation(s)
- Judith Feichtmayer
- Institute of Groundwater Ecology, Helmholtz Zentrum München GmbH, Neuherberg, Germany
| | - Li Deng
- Institute of Groundwater Ecology, Helmholtz Zentrum München GmbH, Neuherberg, Germany
- Institute of Virology, Helmholtz Zentrum München GmbH, Neuherberg, Germany
| | - Christian Griebler
- Institute of Groundwater Ecology, Helmholtz Zentrum München GmbH, Neuherberg, Germany
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Spain EM, Núñez ME, Kim HJ, Taylor RJ, Thomas N, Wengen MB, Dalleska NF, Bromley JP, Schermerhorn KH, Ferguson MA. Identification and differential production of ubiquinone-8 in the bacterial predator Bdellovibrio bacteriovorus. Res Microbiol 2016; 167:413-23. [PMID: 27106259 DOI: 10.1016/j.resmic.2016.04.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2015] [Revised: 01/16/2016] [Accepted: 04/02/2016] [Indexed: 01/04/2023]
Abstract
Bdellovibrio bacteriovorus 109J, a predatory bacterium with potential as a bacterial control agent, can exist in several lifestyles that differ both in predatory capacity and color. We determined that levels of ubiquinone-8 contribute to the distinctive but variable yellow color of different types of Bdellovibrio cells. Steady-state ubiquinone-8 concentrations did not differ markedly between conventional predatory and host-independent B. bacteriovorus despite upregulation of a suite of ubiquinone-8 synthesis genes in host-independent cells. In contrast, in spatially organized B. bacteriovorus films, the yellow inner regions contain significantly higher ubiquinone-8 concentrations than the off-white outer regions. Correspondingly, RT-PCR analysis reveals that the inner region, previously shown to consist primarily of active predators, clearly expresses two ubiquinone biosynthesis genes, while the outer region, composed mainly of quiescent or stalled bdelloplasts, expresses those genes weakly or not at all. Moreover, B. bacteriovorus cells in the inner region of week-old interfacial films, which are phenotypically attack-phase, have much higher UQ8 levels than regular attack-phase bdellovibrios, most likely because their "trapped" state prevents a high expenditure of energy to power flagellar motion.
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Affiliation(s)
- Eileen M Spain
- Department of Chemistry, Occidental College, 1600 Campus Rd, Los Angeles, CA 90041, USA.
| | - Megan E Núñez
- Department of Chemistry, Wellesley College, 106 Central St. Wellesley, MA 02481, USA.
| | - Hyeong-Jin Kim
- Department of Chemistry, Occidental College, 1600 Campus Rd, Los Angeles, CA 90041, USA.
| | - Ryan J Taylor
- Department of Chemistry, State University of New York at New Paltz, 1 Hawk Drive, New Paltz, NY 12561, USA.
| | - Nicholas Thomas
- Department of Chemistry, Occidental College, 1600 Campus Rd, Los Angeles, CA 90041, USA.
| | - Michael B Wengen
- Department of Chemistry, State University of New York at New Paltz, 1 Hawk Drive, New Paltz, NY 12561, USA.
| | - Nathan F Dalleska
- Environmental Analysis Center, California Institute of Technology, 1200 E. California Blvd., Pasadena, CA 91125, USA.
| | - Joseph P Bromley
- Department of Chemistry, State University of New York at New Paltz, 1 Hawk Drive, New Paltz, NY 12561, USA.
| | - Kimberly H Schermerhorn
- Department of Chemistry, State University of New York at New Paltz, 1 Hawk Drive, New Paltz, NY 12561, USA.
| | - Megan A Ferguson
- Department of Chemistry, State University of New York at New Paltz, 1 Hawk Drive, New Paltz, NY 12561, USA.
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Jurkevitch E. Isolation and classification of Bdellovibrio and like organisms. CURRENT PROTOCOLS IN MICROBIOLOGY 2012; Chapter 7:Unit7B.1. [PMID: 22875568 DOI: 10.1007/978-3-642-39044-9_379] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Bdellovibrio and like organisms (BALOs) are obligate predators of Gram-negative bacteria. BALOs are isolated as plaques growing at the expense of their prey and are cultivated as two-member cultures. The growth cycle is composed of an extracellular attack phase and an intraperiplasmic elongation and replication phase. However, there are methods for obtaining host-independent (HI) mutants that grow without prey on rich media. BALOs are commonly found in the environment but generally constitute small populations; therefore, their isolation may require enrichment steps. Contamination by other bacteria during isolation necessitates efficient separation between the smaller BALO cells from the majority of larger bacteria. BALOs can also be directly detected and quantified in environmental samples using specific PCR. Synchronous cultures of both wild-type and HI derivatives can be obtained to study the different growth phases. These can be further separated by centrifugation. Classification is based on 16S rDNA analysis. Protocols relevant to these aspects of BALO detection, isolation, growth, classification, and quantitation are presented in this unit.
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Affiliation(s)
- Edouard Jurkevitch
- Plant Pathology and Microbiology, The Hebrew University of Jerusalem, Rehovot, Israel
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van der Horst MA, Key J, Hellingwerf KJ. Photosensing in chemotrophic, non-phototrophic bacteria: let there be light sensing too. Trends Microbiol 2007; 15:554-62. [PMID: 18024131 DOI: 10.1016/j.tim.2007.09.009] [Citation(s) in RCA: 95] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2007] [Revised: 09/18/2007] [Accepted: 09/19/2007] [Indexed: 10/22/2022]
Abstract
Putative light-sensing proteins are ubiquitously encoded in the genomes of chemotrophic, non-photosynthetic bacteria. Surprisingly, these are not limited to UV-receptors: the metagenome of the chemotrophic prokaryotes encodes representatives of all known major families of photoreceptors. Insight into the mechanism of light-mediated signaling is relatively advanced, but most light-induced physiological and behavioral responses in chemotrophic bacteria are not well understood. In the current era of 'omics' studies, this knowledge gap could be closed rapidly. Here we review the state of the art in this field. Because light signals can be manipulated accurately, these photoreceptors might help provide a systems-level understanding of the cytology of bacteria.
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Affiliation(s)
- Michael A van der Horst
- Laboratory for Microbiology, Swammerdam Institute for Life Sciences, University of Amsterdam, Nieuwe Achtergracht 166, 1018 WV Amsterdam, The Netherlands
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Schoeffield AJ, Williams HN, Turng B, Fackler WA. A Comparison of the Survival of Intraperiplasmic and Attack Phase Bdellovibrios with Reduced Oxygen. MICROBIAL ECOLOGY 1996; 32:35-46. [PMID: 8661540 DOI: 10.1007/bf00170105] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
The ability of intraperiplasmic and attack phase bdellovibrios to survive and/or grow under anoxic and microaerobic conditions was examined. Both halotolerant and nonhalotolerant bdellovibrio strains were examined. In all instances, the bdellovibrio strains were unable to grow under anoxic conditions, but were able to survive for periods of time in both the extracellular and intraperiplasmic forms. However, the intraperiplasmic organisms were observed to survive longer. Increased temperature hastened the loss of viability of both forms of the predatory bacteria in oxic and anoxic environments. Under microaerobic conditions, halotolerant bdellovibrios were observed to grow, although at a slightly reduced rate than in atmospheric oxygen, while two nonhalotolerant isolates survived but did not grow. The ability of attack phase bdellovibrios to survive in an anoxic environment for up to nine days and their growth or survival under microaerobic conditions greatly expands the possible ecological niches in which the predators may be active members of the microbial community.
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Affiliation(s)
- AJ Schoeffield
- Biology Department, Loyola College, 4501 N. Charles Street, Baltimore, MD 21210, USA
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Thomashow LS, Rittenberg SC. Isolation and composition of sheathed flagella from Bdellovibrio bacteriovorus 109J. J Bacteriol 1985; 163:1047-54. [PMID: 4030691 PMCID: PMC219236 DOI: 10.1128/jb.163.3.1047-1054.1985] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
A procedure was developed for the purification of sheathed flagella from Bdellovibrio bacteriovorus 109J. Preparations of isolated flagella appeared as filaments 28 nm in diameter, did not vary in sheath content by more than 10% from the mean, and contained 50% protein, 38% phospholipid, and 12% lipopolysaccharide (LPS) by weight. The sheath was readily solubilized by Triton X-100, whether or not EDTA was present, and contained all of the LPS and phospholipid and 30 to 40% of the protein of the intact flagella; sedimentable core filament polypeptides accounted for the remainder. Flagellar LPS was significantly enriched in nonadecenoic acid (19:1) and depleted in beta-hydroxymyristic acid relative to outer membrane LPS from intraperiplasmically grown bdellovibrios. These observations suggest that the sheath is a stable domain distinct from the bulk of the outer membrane. The sheath also contained substantially more phospholipid (57%) and less protein (26%) of a more heterogeneous composition than that of previously described outer membranes. This unusual balance of constituents was predicted to result in a fluid membrane compatible with a model for the generation of motility by rotation of the core filament within a highly flexible sheath.
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Varon M, Shilo M. Inhibition of the predatory activity ofBdellovibrio by various environmental pollutants. MICROBIAL ECOLOGY 1981; 7:107-111. [PMID: 24227420 DOI: 10.1007/bf02032492] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
The predatory activity of bdellovibrios is affected by various environmental pollutants such as detergents, heavy metals, and pesticides. This was shown in a two-membered system ofBdellovibrio andPhotobacterium, in which the effect of the predator on the bioluminescence of the prey indicated the activity of the former. The high sensitivity of the bdellovibrios toward certain chemicals (e.g., CdCl2) indicates the possibility of using the system for biological monitoring of those chemicals.
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Affiliation(s)
- M Varon
- Division of Microbial and Molecular Ecology, Institute of Life Sciences, Hebrew University, Jerusalem, Israel
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Abstract
A particulate, subcellular fraction of Escherichia coli was shown to promote the growth of host dependent (H-D) Bdellovibrio in the absence of host cells. The growth promoting activity was enhanced by both cations and trypisn, and destroyed by pronase. During the axenic growth unipolar spheres appear in the elongating Bdellovibrio forms. Thymidine monophosphate was more readily incorporated than thymidine into the Bdellovibrio DNA during growth in the host free system.
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Friedberg I, Frieberg D. Freeze-fracture-etching studies onBidellovibrio bacteriovorusmutants of altered host dependency. FEMS Microbiol Lett 1977. [DOI: 10.1111/j.1574-6968.1977.tb00964.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
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