• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (5073403)   Today's Articles (130)
For: Salvador ML, Klein U, Bogorad L. Endogenous fluctuations of DNA topology in the chloroplast of Chlamydomonas reinhardtii. Mol Cell Biol 1998;18:7235-42. [PMID: 9819410 PMCID: PMC109305 DOI: 10.1128/mcb.18.12.7235] [Citation(s) in RCA: 51] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
Number Cited by Other Article(s)
1
Behle A, Dietsch M, Goldschmidt L, Murugathas W, Berwanger L, Burmester J, Yao L, Brandt D, Busche T, Kalinowski J, Hudson E, Ebenhöh O, Axmann I, Machné R. Manipulation of topoisomerase expression inhibits cell division but not growth and reveals a distinctive promoter structure in Synechocystis. Nucleic Acids Res 2022;50:12790-12808. [PMID: 36533444 PMCID: PMC9825172 DOI: 10.1093/nar/gkac1132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Revised: 11/03/2022] [Accepted: 11/10/2022] [Indexed: 12/23/2022]  Open
2
Pacheco-Bernal I, Becerril-Pérez F, Aguilar-Arnal L. Circadian rhythms in the three-dimensional genome: implications of chromatin interactions for cyclic transcription. Clin Epigenetics 2019;11:79. [PMID: 31092281 PMCID: PMC6521413 DOI: 10.1186/s13148-019-0677-2] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2019] [Accepted: 04/29/2019] [Indexed: 12/20/2022]  Open
3
Muskhelishvili G, Travers A. The regulatory role of DNA supercoiling in nucleoprotein complex assembly and genetic activity. Biophys Rev 2016;8:5-22. [PMID: 28510220 PMCID: PMC5425797 DOI: 10.1007/s12551-016-0237-3] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2016] [Accepted: 10/21/2016] [Indexed: 01/06/2023]  Open
4
Iwasaki H, Kondo T. Circadian Timing Mechanism in the Prokaryotic Clock System of Cyanobacteria. J Biol Rhythms 2016;19:436-44. [PMID: 15534323 DOI: 10.1177/0748730404269060] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
5
Multifunctionality of plastid nucleoids as revealed by proteome analyses. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2016;1864:1016-38. [PMID: 26987276 DOI: 10.1016/j.bbapap.2016.03.009] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2015] [Revised: 02/25/2016] [Accepted: 03/09/2016] [Indexed: 01/08/2023]
6
Idoine AD, Boulouis A, Rupprecht J, Bock R. The diurnal logic of the expression of the chloroplast genome in Chlamydomonas reinhardtii. PLoS One 2014;9:e108760. [PMID: 25272288 PMCID: PMC4182738 DOI: 10.1371/journal.pone.0108760] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2014] [Accepted: 09/04/2014] [Indexed: 12/01/2022]  Open
7
Dodd AN, Kusakina J, Hall A, Gould PD, Hanaoka M. The circadian regulation of photosynthesis. PHOTOSYNTHESIS RESEARCH 2014;119:181-90. [PMID: 23529849 DOI: 10.1007/s11120-013-9811-8] [Citation(s) in RCA: 64] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2012] [Accepted: 03/08/2013] [Indexed: 05/25/2023]
8
Powikrowska M, Oetke S, Jensen PE, Krupinska K. Dynamic composition, shaping and organization of plastid nucleoids. FRONTIERS IN PLANT SCIENCE 2014;5:424. [PMID: 25237313 PMCID: PMC4154389 DOI: 10.3389/fpls.2014.00424] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2014] [Accepted: 08/08/2014] [Indexed: 05/18/2023]
9
Kawazoe R, Mahan KM, Venghaus BE, Carter ML, Herrin DL. Circadian regulation of chloroplast transcription in Chlamydomonas is accompanied by little or no fluctuation in RPOD levels or core RNAP activity. Mol Biol Rep 2012;39:10565-71. [DOI: 10.1007/s11033-012-1942-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2012] [Accepted: 10/01/2012] [Indexed: 10/27/2022]
10
Onishi Y, Kawano Y. Rhythmic binding of Topoisomerase I impacts on the transcription of Bmal1 and circadian period. Nucleic Acids Res 2012;40:9482-92. [PMID: 22904072 PMCID: PMC3479213 DOI: 10.1093/nar/gks779] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]  Open
11
Melonek J, Matros A, Trösch M, Mock HP, Krupinska K. The core of chloroplast nucleoids contains architectural SWIB domain proteins. THE PLANT CELL 2012;24:3060-73. [PMID: 22797472 PMCID: PMC3426132 DOI: 10.1105/tpc.112.099721] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2012] [Revised: 06/14/2012] [Accepted: 06/26/2012] [Indexed: 05/04/2023]
12
Liere K, Weihe A, Börner T. The transcription machineries of plant mitochondria and chloroplasts: Composition, function, and regulation. JOURNAL OF PLANT PHYSIOLOGY 2011;168:1345-60. [PMID: 21316793 DOI: 10.1016/j.jplph.2011.01.005] [Citation(s) in RCA: 148] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2010] [Revised: 01/07/2011] [Accepted: 01/10/2011] [Indexed: 05/04/2023]
13
Matsuo T, Ishiura M. Chlamydomonas reinhardtiias a new model system for studying the molecular basis of the circadian clock. FEBS Lett 2011;585:1495-502. [DOI: 10.1016/j.febslet.2011.02.025] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2010] [Revised: 01/31/2011] [Accepted: 02/21/2011] [Indexed: 12/31/2022]
14
Schulze T, Prager K, Dathe H, Kelm J, Kiessling P, Mittag M. How the green alga Chlamydomonas reinhardtii keeps time. PROTOPLASMA 2010;244:3-14. [PMID: 20174954 DOI: 10.1007/s00709-010-0113-0] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2009] [Accepted: 01/18/2010] [Indexed: 05/10/2023]
15
New Insights into the Circadian Clock in Chlamydomonas. INTERNATIONAL REVIEW OF CELL AND MOLECULAR BIOLOGY 2010;280:281-314. [DOI: 10.1016/s1937-6448(10)80006-1] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
16
Rhythmic SAF-A binding underlies circadian transcription of the Bmal1 gene. Mol Cell Biol 2008;28:3477-88. [PMID: 18332112 DOI: 10.1128/mcb.02227-07] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]  Open
17
Wijnen H, Young MW. Interplay of circadian clocks and metabolic rhythms. Annu Rev Genet 2007;40:409-48. [PMID: 17094740 DOI: 10.1146/annurev.genet.40.110405.090603] [Citation(s) in RCA: 257] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
18
Iliev D, Voystekh O, Mittag M. The circadian system ofChlamydomonas reinhardtii. BIOL RHYTHM RES 2007. [DOI: 10.1080/09291010600804544] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
19
Woelfle MA, Johnson CH. No promoter left behind: global circadian gene expression in cyanobacteria. J Biol Rhythms 2007;21:419-31. [PMID: 17107933 PMCID: PMC3431602 DOI: 10.1177/0748730406294418] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
20
Bock R. Structure, function, and inheritance of plastid genomes. CELL AND MOLECULAR BIOLOGY OF PLASTIDS 2007. [DOI: 10.1007/4735_2007_0223] [Citation(s) in RCA: 136] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
21
Transcription and transcriptional regulation in plastids. CELL AND MOLECULAR BIOLOGY OF PLASTIDS 2007. [DOI: 10.1007/4735_2007_0232] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
22
Smith RM, Williams SB. Circadian rhythms in gene transcription imparted by chromosome compaction in the cyanobacterium Synechococcus elongatus. Proc Natl Acad Sci U S A 2006;103:8564-9. [PMID: 16707582 PMCID: PMC1482530 DOI: 10.1073/pnas.0508696103] [Citation(s) in RCA: 107] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
23
Wijnen H, Naef F, Boothroyd C, Claridge-Chang A, Young MW. Control of daily transcript oscillations in Drosophila by light and the circadian clock. PLoS Genet 2006;2:e39. [PMID: 16565745 PMCID: PMC1413497 DOI: 10.1371/journal.pgen.0020039] [Citation(s) in RCA: 105] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2005] [Accepted: 02/03/2006] [Indexed: 11/19/2022]  Open
24
Williams SB. A Circadian Timing Mechanism in the Cyanobacteria. Adv Microb Physiol 2006;52:229-96. [PMID: 17027373 DOI: 10.1016/s0065-2911(06)52004-1] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
25
Kucho KI, Okamoto K, Tsuchiya Y, Nomura S, Nango M, Kanehisa M, Ishiura M. Global analysis of circadian expression in the cyanobacterium Synechocystis sp. strain PCC 6803. J Bacteriol 2005;187:2190-9. [PMID: 15743968 PMCID: PMC1064041 DOI: 10.1128/jb.187.6.2190-2199.2005] [Citation(s) in RCA: 115] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
26
Mittag M, Kiaulehn S, Johnson CH. The circadian clock in Chlamydomonas reinhardtii. What is it for? What is it similar to? PLANT PHYSIOLOGY 2005;137:399-409. [PMID: 15710681 PMCID: PMC1065344 DOI: 10.1104/pp.104.052415] [Citation(s) in RCA: 66] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2004] [Revised: 10/04/2004] [Accepted: 10/07/2004] [Indexed: 05/17/2023]
27
Shiina T, Tsunoyama Y, Nakahira Y, Khan MS. Plastid RNA polymerases, promoters, and transcription regulators in higher plants. INTERNATIONAL REVIEW OF CYTOLOGY 2005;244:1-68. [PMID: 16157177 DOI: 10.1016/s0074-7696(05)44001-2] [Citation(s) in RCA: 132] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
28
Stauber EJ, Hippler M. Chlamydomonas reinhardtii proteomics. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2004;42:989-1001. [PMID: 15707836 DOI: 10.1016/j.plaphy.2004.09.008] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2004] [Accepted: 09/27/2004] [Indexed: 05/01/2023]
29
Min H, Liu Y, Johnson CH, Golden SS. Phase determination of circadian gene expression in Synechococcus elongatus PCC 7942. J Biol Rhythms 2004;19:103-12. [PMID: 15038850 DOI: 10.1177/0748730403262056] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
30
Johnson CH. Global orchestration of gene expression by the biological clock of cyanobacteria. Genome Biol 2004;5:217. [PMID: 15059250 PMCID: PMC395776 DOI: 10.1186/gb-2004-5-4-217] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
31
Nakahira Y, Katayama M, Miyashita H, Kutsuna S, Iwasaki H, Oyama T, Kondo T. Global gene repression by KaiC as a master process of prokaryotic circadian system. Proc Natl Acad Sci U S A 2004;101:881-5. [PMID: 14709675 PMCID: PMC321775 DOI: 10.1073/pnas.0307411100] [Citation(s) in RCA: 98] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2003] [Indexed: 11/18/2022]  Open
32
Carter ML, Smith AC, Kobayashi H, Purton S, Herrin DL. Structure, circadian regulation and bioinformatic analysis of the unique sigma factor gene in Chlamydomonas reinhardtii. PHOTOSYNTHESIS RESEARCH 2004;82:339-49. [PMID: 16143845 DOI: 10.1007/s11120-004-4213-6] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/24/2003] [Accepted: 07/19/2004] [Indexed: 05/04/2023]
33
Mittag M. The function of circadian RNA-binding proteins and their cis-acting elements in microalgae. Chronobiol Int 2003;20:529-41. [PMID: 12916711 DOI: 10.1081/cbi-120022411] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
34
Michael TP, McClung CR. Enhancer trapping reveals widespread circadian clock transcriptional control in Arabidopsis. PLANT PHYSIOLOGY 2003;132:629-39. [PMID: 12805593 PMCID: PMC167003 DOI: 10.1104/pp.021006] [Citation(s) in RCA: 119] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2003] [Revised: 02/21/2003] [Accepted: 03/01/2003] [Indexed: 05/18/2023]
35
Werner R. Chlamydomonas reinhardtii as a unicellular model for circadian rhythm analysis. Chronobiol Int 2002;19:325-43. [PMID: 12025928 DOI: 10.1081/cbi-120002981] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
36
Mittag M. Circadian rhythms in microalgae. INTERNATIONAL REVIEW OF CYTOLOGY 2002;206:213-47. [PMID: 11407761 DOI: 10.1016/s0074-7696(01)06023-5] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
37
Mori T, Johnson CH. Circadian programming in cyanobacteria. Semin Cell Dev Biol 2001;12:271-8. [PMID: 11463211 DOI: 10.1006/scdb.2001.0254] [Citation(s) in RCA: 73] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
38
McClung CR. CIRCADIAN RHYTHMS IN PLANTS. ANNUAL REVIEW OF PLANT PHYSIOLOGY AND PLANT MOLECULAR BIOLOGY 2001;52:139-162. [PMID: 11337395 DOI: 10.1146/annurev.arplant.52.1.139] [Citation(s) in RCA: 157] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
39
Kawazoe R, Hwang S, Herrin DL. Requirement for cytoplasmic protein synthesis during circadian peaks of transcription of chloroplast-encoded genes in Chlamydomonas. PLANT MOLECULAR BIOLOGY 2000;44:699-709. [PMID: 11202433 DOI: 10.1023/a:1026519718992] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
PrevPage 1 of 1 1Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA