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For: Villeponteau B, Martinson HG. Gamma rays and bleomycin nick DNA and reverse the DNase I sensitivity of beta-globin gene chromatin in vivo. Mol Cell Biol 1987;7:1917-24. [PMID: 2439900 DOI: 10.1128/mcb.7.5.1917-1924.1987] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
Number Cited by Other Article(s)
1
Fukute J, Maki K, Adachi T. The nucleolar shell provides anchoring sites for DNA untwisting. Commun Biol 2024;7:83. [PMID: 38263258 PMCID: PMC10805735 DOI: 10.1038/s42003-023-05750-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Accepted: 12/28/2023] [Indexed: 01/25/2024]  Open
2
Transcriptionally Active Chromatin-Lessons Learned from the Chicken Erythrocyte Chromatin Fractionation. Cells 2021;10:cells10061354. [PMID: 34070759 PMCID: PMC8226759 DOI: 10.3390/cells10061354] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Revised: 05/26/2021] [Accepted: 05/27/2021] [Indexed: 11/20/2022]  Open
3
Intercalation of small molecules into DNA in chromatin is primarily controlled by superhelical constraint. PLoS One 2019;14:e0224936. [PMID: 31747397 PMCID: PMC6867626 DOI: 10.1371/journal.pone.0224936] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2019] [Accepted: 09/30/2019] [Indexed: 12/22/2022]  Open
4
Effects of DNA supercoiling on chromatin architecture. Biophys Rev 2016;8:51-64. [PMID: 28035244 PMCID: PMC5153829 DOI: 10.1007/s12551-016-0242-6] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2016] [Accepted: 06/13/2016] [Indexed: 01/03/2023]  Open
5
Corless S, Gilbert N. Effects of DNA supercoiling on chromatin architecture. Biophys Rev 2016;8:245-258. [PMID: 27738453 PMCID: PMC5039215 DOI: 10.1007/s12551-016-0210-1] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2016] [Accepted: 06/13/2016] [Indexed: 12/28/2022]  Open
6
Ulyanov SV, Gavrilov AA. Chicken β-globin genes: A model system to study the transcriptional regulation at the level of genome domains. Mol Biol 2012. [DOI: 10.1134/s0026893312040127] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
7
Kumala S, Hadj-Sahraoui Y, Rzeszowska-Wolny J, Hancock R. DNA of a circular minichromosome linearized by restriction enzymes or other reagents is resistant to further cleavage: an influence of chromatin topology on the accessibility of DNA. Nucleic Acids Res 2012;40:9417-28. [PMID: 22848103 PMCID: PMC3479189 DOI: 10.1093/nar/gks723] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
8
Davie JR, Spencer VA. Signal transduction pathways and the modification of chromatin structure. PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY 2000;65:299-340. [PMID: 11008491 DOI: 10.1016/s0079-6603(00)65008-0] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/17/2023]
9
Tabocchini MA, Rothkamm K, Signoretti C, Risse J, Sapora O, Löbrich M. Formation and repair of DNA double-strand breaks in gamma-irradiated K562 cells undergoing erythroid differentiation. Mutat Res 2000;461:71-82. [PMID: 10980413 DOI: 10.1016/s0921-8777(00)00041-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
10
Sukhova T, Popenko V, Serdjuk O, Alekhina R, Botezatu I, Shelepov V, Lichtenstein A. DNAs with unusual properties revealed by field inversion gel electrophoresis of agarose-encapsulated DNA from mammalian cells. FEBS Lett 1998;432:158-62. [PMID: 9720916 DOI: 10.1016/s0014-5793(98)00854-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
11
Sun JM, Chen HY, Litchfield DW, Davie JR. Developmental changes in transcription factors associated with the nuclear matrix of chicken erythrocytes. J Cell Biochem 1996;62:454-66. [PMID: 8891891 DOI: 10.1002/(sici)1097-4644(19960915)62:4<454::aid-jcb3>3.0.co;2-l] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
12
Ljungman M. Effect of differential gene expression on the chromatin structure of the DHFR gene domain in vivo. BIOCHIMICA ET BIOPHYSICA ACTA 1996;1307:171-7. [PMID: 8679702 DOI: 10.1016/0167-4781(96)00037-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
13
Davie JR. The nuclear matrix and the regulation of chromatin organization and function. INTERNATIONAL REVIEW OF CYTOLOGY 1996;162A:191-250. [PMID: 8575881 DOI: 10.1016/s0074-7696(08)61232-2] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
14
Liu SY, Gonzalez FJ. Role of the liver-enriched transcription factor HNF-1 alpha in expression of the CYP2E1 gene. DNA Cell Biol 1995;14:285-93. [PMID: 7710685 DOI: 10.1089/dna.1995.14.285] [Citation(s) in RCA: 68] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]  Open
15
Prosperi E, Giangarè MC, Bottiroli G. DNA stainability with base-specific fluorochromes: dependence on the DNA topology in situ. HISTOCHEMISTRY 1994;102:123-8. [PMID: 7529756 DOI: 10.1007/bf00269016] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
16
Kvam E. Photosensitized DNA damage in human cells is localized in chromatin sensitive to DNAse I digestion. Int J Radiat Biol 1994;65:405-8. [PMID: 7908927 DOI: 10.1080/09553009414550471] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
17
Villeponteau B, Brawley J, Martinson HG. Nucleosome spacing is compressed in active chromatin domains of chick erythroid cells. Biochemistry 1992;31:1554-63. [PMID: 1310613 DOI: 10.1021/bi00120a037] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
18
Zhu JD, Sun XP, Wang F. The DNA intercalator, ethidium bromide, alters the pattern of DNAse I hypersensitive sites of the beta A-globin gene in chicken erythrocytes. BIOCHIMICA ET BIOPHYSICA ACTA 1991;1089:158-66. [PMID: 2054379 DOI: 10.1016/0167-4781(91)90003-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
19
Lee MS, Garrard WT. Transcription-induced nucleosome 'splitting': an underlying structure for DNase I sensitive chromatin. EMBO J 1991. [PMID: 2001676 PMCID: PMC452691] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
20
Prosperi E, Giangarè MC, Bottiroli G. Nuclease-induced DNA structural changes assessed by flow cytometry with the intercalating dye propidium iodide. CYTOMETRY 1991;12:323-9. [PMID: 2065557 DOI: 10.1002/cyto.990120406] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
21
Rösl F, Waldeck W. Topological properties of bovine papillomavirus type 1 (BPV-1) DNA in episomal nucleoprotein complexes: a model system for chromatin organization in higher eukaryotes. Mol Carcinog 1991;4:249-56. [PMID: 1648363 DOI: 10.1002/mc.2940040312] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
22
Foresti M, Gaudio L, Geraci G. Inhibition of MEL cells' capacity to undergo erythroid differentiation by chemicals added during induction. Mutat Res 1990;234:9-14. [PMID: 2304478 DOI: 10.1016/0165-1161(90)90025-j] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
23
Villeponteau B. Characterization of a topoisomerase-like activity at specific hypersensitive sites in the Drosophila histone gene cluster. Biochem Biophys Res Commun 1989;162:232-7. [PMID: 2546546 DOI: 10.1016/0006-291x(89)91986-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
24
Patient RK, Allan J. Active chromatin. Curr Opin Cell Biol 1989;1:454-9. [PMID: 2697264 DOI: 10.1016/0955-0674(89)90005-7] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
25
Brewer AC, Enver T, Greaves DR, Allan J, Patient RK. 5' structural motifs and Xenopus beta globin gene activation. J Mol Biol 1988;199:575-85. [PMID: 3351944 DOI: 10.1016/0022-2836(88)90302-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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