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Gliaudelis G, Lukyanchuk V, Chtchelkatchev N, Saitov I, Kondratyuk N. Dynamical properties of hydrogen fluid at high pressures. J Chem Phys 2025; 162:024504. [PMID: 39774889 DOI: 10.1063/5.0236394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2024] [Accepted: 12/19/2024] [Indexed: 01/11/2025] Open
Abstract
The properties of the hydrogen fluid at high pressures are still of interest to the scientific community. The experimentally unreachable dynamical properties could provide new insights into this field. In 2020 [Cheng et al., Nature 585, 217-220 (2020)], the machine-learned approach allows the calculation of the self-diffusion coefficient in the warm dense hydrogen with higher precision. After that, the work [van de Bund et al., Phys. Rev. Lett. 126(22), 225701 (2021)] reports the ab initio treatment of isotopic effects on diffusion in H2/D2 and a significant increase in its value in the region of the phase transition. Both works indicate the anomalous growth of diffusion, but the reasons for this phenomenon are unclear. In the present work, we reveal the plasma-like behavior of the diffusion growth. We apply the classical molecular dynamics method using a machine learning potential developed on the ab initio modeling for the prediction of diffusion and shear viscosity coefficients. We consider dependencies of the vibrational spectrum, molecule lifetime, diffusion, and shear viscosity coefficients on density along the isotherms in the temperature range from 600 to 1100 K.
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Affiliation(s)
- G Gliaudelis
- Moscow Center for Advanced Studies, Moscow, Russia
| | - V Lukyanchuk
- Moscow Center for Advanced Studies, Moscow, Russia
- Joint Institute for High Temperatures RAS, Moscow, Russia
| | | | - I Saitov
- Department of Physical and Chemical Sciences, University of L'Aquila, L'Aquila, Italy
| | - N Kondratyuk
- Moscow Center for Advanced Studies, Moscow, Russia
- Joint Institute for High Temperatures RAS, Moscow, Russia
- HSE University, Moscow, Russia
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Khusnutdinova NR, Markelov DA. Hydrodynamic radius of dendrimers in solvents. Phys Chem Chem Phys 2023; 25:28220-28229. [PMID: 37823286 DOI: 10.1039/d3cp03382a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/13/2023]
Abstract
The diffusion properties and hydrodynamic radius, Rh, of macromolecules are important for theoretical studies and practical application. Moreover, comparison of Rh values obtained from simulation and experimental data is used to check the correctness of simulation results. Here, we study the translation mobility of poly(butylcarbosilane) dendrimers in chloroform solution using molecular dynamics simulations and consider simulation details that may influence the accuracy of the result. Different methods to estimate Rh for a dendrimer are discussed with comparison to our experimental data. It was shown that the traditional MD simulation method for extraction of the diffusion coefficient (and calculation of Rh) of dendrimers as a rule faces difficulties and requires simulation resources several times greater than, for example, the same for a linear analogue. In the majority of MD simulation papers, the diffusion coefficient and/or Rh are calculated incorrectly. Also, we establish that correction of Rh according to the simulation box or estimation of Rh by using the gyration radius does not give values close to experimental data. To avoid the mentioned problems, we found an alternative way: to consider rotational diffusion, which gives an Rh similar to that from experiment and is practically independent of the size of the simulation box and other simulation parameters.
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Affiliation(s)
- Naira R Khusnutdinova
- Saint Petersburg State University, 7/9 Universitetskaya nab., St Petersburg 199034, Russia.
- Kazan State Power Engineering University, 51 Krasnoselskaya st., Kazan 420066, Russia.
| | - Denis A Markelov
- Saint Petersburg State University, 7/9 Universitetskaya nab., St Petersburg 199034, Russia.
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Ma J, Wen Z, Xiao P, Wang P, Luo J, Han X, Zhao S. Emulsification Mechanism of Surfactants in Different Oil Phases: A Dissipative Particle Dynamics Study. Colloids Surf A Physicochem Eng Asp 2023. [DOI: 10.1016/j.colsurfa.2023.131213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
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Deshchenya VI, Kondratyuk ND, Lankin AV, Norman GE. Modeling of Transport Properties of Aqueous Sucrose Solutions by the Molecular Dynamics Method. RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY A 2022. [DOI: 10.1134/s0036024422030086] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Volkov NA, Eroshkin YA, Shchekin AK, Koltsov IN, Tretyakov NY, Turnaeva EA, Volkova SS, Groman AA. Molecular Dynamics of Decane Solubilization and Diffusion of Aggregates Consisting of Surfactant and Decane Molecules in Aqueous Solutions. COLLOID JOURNAL 2021. [DOI: 10.1134/s1061933x21040141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Kondratyuk N, Lenev D, Pisarev V. Transport coefficients of model lubricants up to 400 MPa from molecular dynamics. J Chem Phys 2020; 152:191104. [PMID: 33687262 DOI: 10.1063/5.0008907] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In this paper, the predictive power of molecular dynamics methods is demonstrated for the cases of model paraffinic and aromatic lubricant liquids at pressures up to 400 MPa. The shear viscosity and self-diffusion coefficients are calculated for 2,2,4-trimethylpentane (C8H18) at 298 K and 1,1-diphenylethane (C14H14) at 333 K. Three force fields with different levels of accuracy are compared by the ability to predict the experimental data. The Stokes-Einstein correlation between viscosity and self-diffusion is demonstrated for both compounds.
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Affiliation(s)
- N Kondratyuk
- Joint Institute for High Temperatures Russian Academy of Sciences, Moscow, Russia
| | - D Lenev
- Joint Institute for High Temperatures Russian Academy of Sciences, Moscow, Russia
| | - V Pisarev
- Joint Institute for High Temperatures Russian Academy of Sciences, Moscow, Russia
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Shchekin AK, Koga K, Volkov NA. The effect of a finite number of monomers available for aggregation at nucleation and micellization in a fixed volume. J Chem Phys 2019; 151:244903. [PMID: 31893896 DOI: 10.1063/1.5129160] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The expressions for the minimal work of aggregate formation as a function of the aggregation number and monomer concentration for a system with a limited number of monomers and a fixed volume have additional terms in comparison with a bulk metastable phase. The role of these terms has been analyzed in the case of droplet homogeneous nucleation and micellization in a nonionic surfactant solution. The appearance of the potential well and direct and reversal aggregation barriers in such systems and their dependence on the system parameters and monomer concentration have been considered and compared.
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Affiliation(s)
- A K Shchekin
- Department of Statistical Physics, Faculty of Physics, St. Petersburg State University, 7/9 Universitetskaya nab., St. Petersburg 199034, Russia
| | - K Koga
- Research Institute for Interdisciplinary Science, Okayama University, 3-1-1 Tsushima-Naka, Kita-ku, Okayama 700-8530, Japan
| | - N A Volkov
- Department of Statistical Physics, Faculty of Physics, St. Petersburg State University, 7/9 Universitetskaya nab., St. Petersburg 199034, Russia
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Mechanism of Unstable Material Removal Modes in Micro Cutting of Silicon Carbide. MICROMACHINES 2019; 10:mi10100696. [PMID: 31614898 PMCID: PMC6843474 DOI: 10.3390/mi10100696] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/31/2019] [Revised: 10/07/2019] [Accepted: 10/11/2019] [Indexed: 11/17/2022]
Abstract
This study conducts large-scale molecular dynamics (MD) simulations of micro cutting of single crystal 6H silicon carbide (SiC) with up to 19 million atoms to investigate the mechanism of unstable material removal modes within the transitional range of undeformed chip thickness in which either brittle or ductile mode of cutting might occur. Under this transitional range, cracks are always formed in the cutting zone, but the stress states cannot guarantee their propagation. The cutting mode is brittle when the cracks can propagate and otherwise ductile mode cutting happens. Plunge cutting experiment is conducted to produce a taper groove on a 6H SiC wafer. There is a transitional zone between the brittle-cut and ductile-cut regions, which has a mostly smooth surface with a few brittle craters on it. This study contributes to the understanding of the detailed process of brittle-ductile cutting mode transition (BDCMT) as it shows that a transitional range can occur even for single crystals without internal defects and provides guidance for the determination of tcritical from taper grooves made by various techniques, e.g., to adopt larger tcritical around the end of the transitional range to increase machining efficiency for grinding or turning as long as the cracks do not extend below the machined surface.
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Kondratyuk N. Contributions of force field interaction forms to Green-Kubo viscosity integral in n-alkane case. J Chem Phys 2019; 151:074502. [PMID: 31438709 DOI: 10.1063/1.5103265] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Decades of molecular simulation history proved that the Green-Kubo method for shear viscosity converges without any problems in atomic and simple molecular liquids, unlike liquids with high values of viscosity. In the case of highly viscous liquids, the time decomposition method was developed in 2015 by Maginn and co-authors [Y. Zhang, A. Otani, and E. J. Maginn, J. Chem. Theory Comput. 11, 3537-3546 (2015)] which allows us to improve the convergence of the Green-Kubo integral. In this paper, the contributions of intramolecular and intermolecular force field parts to the viscosity integral are discovered to gain the understanding of the Green-Kubo method. The n-alkanes from n-ethane to n-pentane at 330 K in the optimized potentials for liquid simulations-all atom force field are used as reference models. The dependencies of these contributions and decay times of the corresponding correlation functions on the chain length are observed. The nonequilibrium simulations are carried out to verify the Green-Kubo results. The obtained values of viscosity are compared with experimental data.
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Affiliation(s)
- N Kondratyuk
- Moscow Institute of Physics and Technology (National Research University), 141700 Dolgoprudnyi, Russia and Joint Institute for High Temperatures of the Russian Academy of Sciences, 125412 Moscow, Russia
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Mysona JA, McCormick AV, Morse DC. Simulation of diblock copolymer surfactants. II. Micelle kinetics. Phys Rev E 2019; 100:012603. [PMID: 31499829 DOI: 10.1103/physreve.100.012603] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2019] [Indexed: 06/10/2023]
Abstract
Molecular dynamics (MD) simulations are used to measure dynamical properties of a simple bead-spring model of A-B diblock copolymer molecules, and to characterize rates and mechanisms of several dynamical processes. Dynamical properties are analyzed within the context of a kinetic population model that allows for both stepwise insertion and expulsion of individual free molecules and occasional fission and fusion of micelles. Kinetic coefficients for stepwise processes and micelle fission have been extracted from MD simulations of individual micelles. Insertion of a free surfactant molecule into a preexisting micelle is shown to be a completely diffusion-controlled process for the model studied here. Estimates are given for rates of rare events that create and destroy entire micelles by competing mechanisms involving stepwise association and dissociation or fission and fusion. Both mechanisms are shown to be relevant over the range of parameters studied here, with association and dissociation dominating in systems with more soluble surfactants and fission and fusion dominating in systems with less soluble surfactants.
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Affiliation(s)
- Joshua A Mysona
- Department of Chemical Engineering and Materials Science, University of Minnesota, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA
| | - Alon V McCormick
- Department of Chemical Engineering and Materials Science, University of Minnesota, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA
| | - David C Morse
- Department of Chemical Engineering and Materials Science, University of Minnesota, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA
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