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Gérard S, Navarro AM, Decaëns T, Hedde M, Marchán DF. Not the brightest earthworm in the genus: two non-bioluminescent Avelona (Lumbricidae, Crassiclitellata) with description of a new species. Zootaxa 2025; 5589:270-281. [PMID: 40173775 DOI: 10.11646/zootaxa.5589.1.23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2025] [Indexed: 04/04/2025]
Abstract
Several new earthworm species have been described in France in the last decade, but the Western peri-Alpine region, despite hosting several endemic species, has received little attention. A recently discovered earthworm species from this region was found to be a close relative to Avelona ligra and Allolobophora s.l. zicsii after molecular phylogenetics (based on the molecular markers COI, 16S, ND1, 28S and 12S) and described as Avelona yvesi sp. nov. Morphological study of Av. yvesi sp. nov., Avelona zicsii comb. nov. and Av. ligra allowed to provide an improved diagnosis of the genus, highlighting a wide variability in spermathecae and nephridial morphology. These species reinforce the evolutionary significance of their range as a putative refuge of a pre-glacial diversity, show contrasting distribution patterns which could be attributed to historical or ecological causes, and provide new chances to study bioluminescence in Av. ligra with their closest, non-bioluminescent relatives.
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Affiliation(s)
- Sylvain Gérard
- Eco&Sols; L'Institut Agro Montpellier; INRAE; IRD; CIRAD; Montpellier; France; Univ Montpellier; CNRS; EPHE; IRD; Montpellier; France.
| | - Alejandro Martínez Navarro
- Department of Biodiversity; Ecology and Evolution; Faculty of Biology; Universidad Complutense de Madrid (Spain).
| | - Thibaud Decaëns
- CEFE; Univ Montpellier; CNRS; EPHE; IRD; Montpellier; France.
| | - Mickaël Hedde
- Eco&Sols; L'Institut Agro Montpellier; INRAE; IRD; CIRAD; Montpellier; France.
| | - Daniel Fernández Marchán
- Department of Biodiversity; Ecology and Evolution; Faculty of Biology; Universidad Complutense de Madrid (Spain).
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Petushkov VN, Vavilov MV, Khokhlova AN, Zagitova RI, Belozerova OA, Shcheglov AS, Kovalchuk SI, Tsarkova AS, Rodionova NS, Yampolsky IV, Dubinnyi MA. Henlea earthworm bioluminescence comprises violet-blue BRET from tryptophan 2-carboxylate to deazaflavin cofactor. Biochem Biophys Res Commun 2024; 708:149787. [PMID: 38537527 DOI: 10.1016/j.bbrc.2024.149787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Accepted: 03/12/2024] [Indexed: 04/06/2024]
Abstract
We recently identified the deazaflavin cofactor as a light emitter in novel bioluminescence (BL) system from Siberian earthworms Henlea sp. (Petushkov et al., 2023, Org. Biomol. Chem. 21:415-427). In the present communication we compared in vitro BL spectra in the absence and in the presence of the cofactor and found a wavelength shift from 420 to 476 nm. This violet-blue BRET to deazaflavin cofactor (acceptor of photonless transfer) masks the actual oxyluciferin as an emitter (BRET donor) in the novel BL system. The best candidate for that masked chromophore is tryptophan 2-carboxylate (T2C) found previously as a building block in some natural products isolated from Henlea sp. (Dubinnyi et al., 2020, ChemSelect 5:13155-13159). We synthesized T2C and acetyl-T2C, verified their presence in earthworms by nanoflow-HRMS, explored spectral properties of excitation and emission spectra and found a chain of excitation/emission maxima with a perfect potential for BRET: 300 nm (excitation of T2C) - 420 nm (emission of T2C) - 420 nm (excitation of deazaflavin) - 476 nm (emission of deazaflavin, BL). An array of natural products with T2C chromophore are present in BL earthworms as candidates for novel oxyluciferin. We demonstrated for the Henlea BL that the energy of the excited state of the T2C chromophore is transferred by the Förster mechanism and then emitted by deazaflavin (BRET), similarly to known examples: aequorin-GFP in Aequorea victoria and antenna proteins in bacterial BL systems (lumazine from Photobacterium and yellow fluorescent protein from Vibrio fischeri strain Y1).
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Affiliation(s)
- Valentin N Petushkov
- Institute of Biophysics, Krasnoyarsk Research Center, Siberian Branch, Russian Academy of Sciences, 50/50 Akademgorodok, 660036, Krasnoyarsk, Russia.
| | - Matvey V Vavilov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 16/10 Miklukho-Maklaya str., Moscow, 117997, Russia; Faculty of Biology and Biotechnology, National Research University Higher School of Economics, 33k4 Profsoyuznaya str., Moscow, 117418, Russia
| | - Anastasia N Khokhlova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 16/10 Miklukho-Maklaya str., Moscow, 117997, Russia; Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory 1 bld. 3, Moscow, 119991у, Russia
| | - Renata I Zagitova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 16/10 Miklukho-Maklaya str., Moscow, 117997, Russia
| | - Olga A Belozerova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 16/10 Miklukho-Maklaya str., Moscow, 117997, Russia
| | - Aleksandr S Shcheglov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 16/10 Miklukho-Maklaya str., Moscow, 117997, Russia; Pirogov Russian National Research Medical University, 1 Ostrovityanova str, Moscow, 117997, Russia
| | - Sergey I Kovalchuk
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 16/10 Miklukho-Maklaya str., Moscow, 117997, Russia
| | - Aleksandra S Tsarkova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 16/10 Miklukho-Maklaya str., Moscow, 117997, Russia
| | - Natalia S Rodionova
- Institute of Biophysics, Krasnoyarsk Research Center, Siberian Branch, Russian Academy of Sciences, 50/50 Akademgorodok, 660036, Krasnoyarsk, Russia
| | - Ilia V Yampolsky
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 16/10 Miklukho-Maklaya str., Moscow, 117997, Russia; Pirogov Russian National Research Medical University, 1 Ostrovityanova str, Moscow, 117997, Russia
| | - Maxim A Dubinnyi
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 16/10 Miklukho-Maklaya str., Moscow, 117997, Russia; Moscow Institute of Physics and Technology (State University), 9 Institutskiy per., Dolgoprudny, Moscow Region, 141700, Russia.
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Claes JM, Haddock SHD, Coubris C, Mallefet J. Systematic Distribution of Bioluminescence in Marine Animals: A Species-Level Inventory. Life (Basel) 2024; 14:432. [PMID: 38672704 PMCID: PMC11051050 DOI: 10.3390/life14040432] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 03/20/2024] [Accepted: 03/22/2024] [Indexed: 04/28/2024] Open
Abstract
Bioluminescence is the production of visible light by an organism. This phenomenon is particularly widespread in marine animals, especially in the deep sea. While the luminescent status of numerous marine animals has been recently clarified thanks to advancements in deep-sea exploration technologies and phylogenetics, that of others has become more obscure due to dramatic changes in systematics (themselves triggered by molecular phylogenies). Here, we combined a comprehensive literature review with unpublished data to establish a catalogue of marine luminescent animals. Inventoried animals were identified to species level in over 97% of the cases and were associated with a score reflecting the robustness of their luminescence record. While luminescence capability has been established in 695 genera of marine animals, luminescence reports from 99 additional genera need further confirmation. Altogether, these luminescent and potentially luminescent genera encompass 9405 species, of which 2781 are luminescent, 136 are potentially luminescent (e.g., suggested luminescence in those species needs further confirmation), 99 are non-luminescent, and 6389 have an unknown luminescent status. Comparative analyses reveal new insights into the occurrence of luminescence among marine animal groups and highlight promising research areas. This work will provide a solid foundation for future studies related to the field of marine bioluminescence.
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Affiliation(s)
- Julien M. Claes
- Marine Biology Laboratory, Earth and Life Institute, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium; (C.C.); (J.M.)
| | - Steven H. D. Haddock
- Monterey Bay Aquarium Research Institute, 7700 Sandholdt Road, Moss Landing, CA 95039, USA
| | - Constance Coubris
- Marine Biology Laboratory, Earth and Life Institute, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium; (C.C.); (J.M.)
| | - Jérôme Mallefet
- Marine Biology Laboratory, Earth and Life Institute, Université catholique de Louvain, 1348 Louvain-la-Neuve, Belgium; (C.C.); (J.M.)
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Seesamut T, Yano D, Paitio J, Kin I, Panha S, Oba Y. Occurrence of bioluminescent and nonbioluminescent species in the littoral earthworm genus Pontodrilus. Sci Rep 2021; 11:8407. [PMID: 33863974 PMCID: PMC8052329 DOI: 10.1038/s41598-021-87984-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2020] [Accepted: 04/05/2021] [Indexed: 01/02/2023] Open
Abstract
Pontodrilus litoralis is a cosmopolitan littoral earthworm known to exhibit bioluminescence. Recently, a congeneric species, Pontodrilus longissimus, from Thailand was described. These species are sympatric, but their burrowing depths on Thai beaches are different. In this study, we examined the in vivo and in vitro bioluminescent properties of P. longissimus and P. litoralis. Mechanical stimulation induced in vivo luminescence in P. litoralis, as reported previously, but not in P. longissimus. In vitro cross-reaction tests between these species revealed the absence of luciferin and luciferase activities in P. longissimus. The coelomic fluid of P. litoralis had strong fluorescence that matched the spectral maximum of its bioluminescence, but the same result was not observed for P. longissimus. These results suggest that P. litoralis has luminescence abilities due to the creation of bioluminescent components (i.e., luciferin, luciferase, and light emitters). The presence of both luminous and nonluminous species in a single genus is likely widespread, but only a few examples have been confirmed. Our findings provide insight into the possible functions of bioluminescence in earthworms, such as avoiding predation by littoral earwigs.
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Affiliation(s)
- Teerapong Seesamut
- Department of Environmental Biology, Chubu University, Kasugai, 487-8501, Japan
| | - Daichi Yano
- Department of Environmental Biology, Chubu University, Kasugai, 487-8501, Japan
| | - José Paitio
- Department of Environmental Biology, Chubu University, Kasugai, 487-8501, Japan
| | - Ikuhiko Kin
- Department of Environmental Biology, Chubu University, Kasugai, 487-8501, Japan
| | - Somsak Panha
- Animal Systematics Research Unit, Department of Biology, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand
- Academy of Science, The Royal Society of Thailand, Bangkok, 10300, Thailand
| | - Yuichi Oba
- Department of Environmental Biology, Chubu University, Kasugai, 487-8501, Japan.
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Dubinnyi MA, Ivanov IA, Rodionova NS, Kovalchuk SI, Kaskova ZM, Petushkov VN. α‐C‐Mannosyltryptophan is a Structural Analog of the Luciferin from Bioluminescent Siberian Earthworm
Henlea sp
. ChemistrySelect 2020. [DOI: 10.1002/slct.202003075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Maxim A. Dubinnyi
- Shemyakin-Ovchinnikov Institute of bioorganic chemistry, Russian academy of Sciences GSP-7 Miklukho-Maklaya str., 16/10 117997 Moscow Russia
| | - Igor A. Ivanov
- Shemyakin-Ovchinnikov Institute of bioorganic chemistry, Russian academy of Sciences GSP-7 Miklukho-Maklaya str., 16/10 117997 Moscow Russia
| | - Natalia S. Rodionova
- Institute of Biophysics Krasnoyarsk Research Center Siberian Branch Russian Academy of Sciences Akademgorodok 660036 Krasnoyarsk Russia
| | - Sergey I. Kovalchuk
- Shemyakin-Ovchinnikov Institute of bioorganic chemistry, Russian academy of Sciences GSP-7 Miklukho-Maklaya str., 16/10 117997 Moscow Russia
| | - Zinaida M. Kaskova
- Shemyakin-Ovchinnikov Institute of bioorganic chemistry, Russian academy of Sciences GSP-7 Miklukho-Maklaya str., 16/10 117997 Moscow Russia
- Pirogov Russian National Research Medical University 1 Ostrovityanova st. 117997 Moscow Russia
| | - Valentin N. Petushkov
- Institute of Biophysics Krasnoyarsk Research Center Siberian Branch Russian Academy of Sciences Akademgorodok 660036 Krasnoyarsk Russia
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