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Wagner A, Upcher A, Maria R, Magnesen T, Zelinger E, Raposo G, Palmer BA. Macromolecular sheets direct the morphology and orientation of plate-like biogenic guanine crystals. Nat Commun 2023; 14:589. [PMID: 36737617 PMCID: PMC9898273 DOI: 10.1038/s41467-023-35894-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Accepted: 01/06/2023] [Indexed: 02/05/2023] Open
Abstract
Animals precisely control the morphology and assembly of guanine crystals to produce diverse optical phenomena in coloration and vision. However, little is known about how organisms regulate crystallization to produce optically useful morphologies which express highly reflective crystal faces. Guanine crystals form inside iridosome vesicles within chromatophore cells called iridophores. By following iridosome formation in developing scallop eyes, we show that pre-assembled, fibrillar sheets provide an interface for nucleation and direct the orientation of the guanine crystals. The macromolecular sheets cap the (100) faces of immature guanine crystals, inhibiting growth along the π-stacking growth direction. Crystal growth then occurs preferentially along the sheets to generate highly reflective plates. Despite their different physical properties, the morphogenesis of iridosomes bears a striking resemblance to melanosome morphogenesis in vertebrates, where amyloid sheets template melanin deposition. The common control mechanisms for melanin and guanine formation inspire new approaches for manipulating the morphologies and properties of molecular materials.
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Affiliation(s)
- Avital Wagner
- Department of Chemistry, Ben-Gurion University of the Negev, Beer-Sheba, 8410501, Israel
| | - Alexander Upcher
- Ilse Katz Institute for Nanoscale Science & Technology, Ben-Gurion University of the Negev, Beer-Sheba, 8410501, Israel
| | - Raquel Maria
- Ilse Katz Institute for Nanoscale Science & Technology, Ben-Gurion University of the Negev, Beer-Sheba, 8410501, Israel
| | - Thorolf Magnesen
- Department of Biological Sciences, University of Bergen, Postbox 7803, Bergen, N-5020, Norway
| | - Einat Zelinger
- The CSI Center for Scientific Imaging, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, POB 12, Rehovot, 7610001, Israel
| | - Graça Raposo
- Institut Curie, PSL Research University, CNRS, UMR144, Structure and Membrane Compartments, 75005, Paris, France.,Institut Curie, PSL Research University, CNRS, UMR144, Cell and Tissue Imaging Facility (PICT-IBiSA), 75005, Paris, France
| | - Benjamin A Palmer
- Department of Chemistry, Ben-Gurion University of the Negev, Beer-Sheba, 8410501, Israel.
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2
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Hollenbeck CM, Portnoy DS, Garcia de la Serrana D, Magnesen T, Matejusova I, Johnston IA. Temperature-associated selection linked to putative chromosomal inversions in king scallop ( Pecten maximus). Proc Biol Sci 2022; 289:20221573. [PMID: 36196545 PMCID: PMC9532988 DOI: 10.1098/rspb.2022.1573] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
Abstract
The genomic landscape of divergence—the distribution of differences among populations or species across the genome—is increasingly characterized to understand the role that microevolutionary forces such as natural selection and recombination play in causing and maintaining genetic divergence. This line of inquiry has also revealed chromosome structure variation to be an important factor shaping the landscape of adaptive genetic variation. Owing to a high prevalence of chromosome structure variation and the strong pressure for local adaptation necessitated by their sessile nature, bivalve molluscs are an ideal taxon for exploring the relationship between chromosome structure variation and local adaptation. Here, we report a population genomic survey of king scallop (Pecten maximus) across its natural range in the northeastern Atlantic Ocean, using a recent chromosome-level genome assembly. We report the presence of at least three large (12–22 Mb), putative chromosomal inversions associated with sea surface temperature and whose frequencies are in contrast to neutral population structure. These results highlight a potentially large role for recombination-suppressing chromosomal inversions in local adaptation and suggest a hypothesis to explain the maintenance of differences in reproductive timing found at relatively small spatial scales across king scallop populations.
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Affiliation(s)
- Christopher M Hollenbeck
- Department of Life Sciences, Texas A&M University Corpus Christi, 6300 Ocean Drive, Corpus Christi, TX 78412, USA.,Texas A&M AgriLife Research, College Station, TX, USA
| | - David S Portnoy
- Department of Life Sciences, Texas A&M University Corpus Christi, 6300 Ocean Drive, Corpus Christi, TX 78412, USA
| | - Daniel Garcia de la Serrana
- Department of Cell Biology, Physiology and Immunology, Faculty of Biology, University of Barcelona, Barcelona, Spain
| | - Thorolf Magnesen
- Department of Biological Sciences, University of Bergen, Thormøhlensgt 53B, Bergen, Norway
| | - Iveta Matejusova
- Marine Science Scotland, Marine Laboratory, 375 Victoria Road, Aberdeen AB11 9DB, UK
| | - Ian A Johnston
- Scottish Oceans Institute, School of Biology, University of St Andrews, St Andrews, Fife KY16 8LB, UK.,Xelect Ltd, Horizon House, Abbey Walk, St Andrews KY16 9LB, UK
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Morrison L, Bennion M, Gill S, Graham CT. Spatio-temporal trace element fingerprinting of king scallops (Pecten maximus) reveals harvesting period and location. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 697:134121. [PMID: 32380612 DOI: 10.1016/j.scitotenv.2019.134121] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2019] [Revised: 08/19/2019] [Accepted: 08/25/2019] [Indexed: 06/11/2023]
Abstract
A rapidly growing human population is increasingly relying on seafood as a source of protein and other essential nutrients. Bivalve shellfish, both from wild populations and aquaculture, will undoubtedly continue to account for a significant portion of overall seafood production, but consumption of such shellfish carries potential health risks. Biotoxins, disease causing organisms and pollution contribute to this risk, as shellfish are indiscriminate, passive filter feeders. While government bodies, industry regulators and producers are capable of managing this risk, counterfeit produce can risk public safety, in turn damaging the reputation of the entire industry. Traceability tools provide a means to uphold food safety standards and mitigate remaining risk to consumers. Here, we show how the use of trace element (TE) signatures in shells and soft tissues of king scallops combined, can predict geographic origin with 100% accuracy. Importantly, we explore the temporal stability of this method, successfully classifying 100% of individuals correctly between two dates just 42 days apart from the same harvesting location. The most important elements in the trace element signatures of the scallops, discriminating between harvesting sites and dates were barium, boron, chromium, lead, manganese, molybdenum and selenium. The traceability tool described here offers a viable method to trace produce to its source, empowering industry regulators, government authorities, aquaculture practitioners and retailers in terms of tracking shellfish throughout the supply chain, which would comply with legislation and boost consumer confidence.
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Affiliation(s)
- Liam Morrison
- Earth and Ocean Sciences, School of Natural Sciences and Ryan Institute, National University of Ireland, Galway, Ireland
| | - Matthew Bennion
- Environmental Research Institute, University of Waikato, Tauranga, New Zealand
| | - Stephen Gill
- Marine and Freshwater Research Centre, Galway-Mayo Institute of Technology, Dublin Road, Galway, Ireland
| | - Conor T Graham
- Marine and Freshwater Research Centre, Galway-Mayo Institute of Technology, Dublin Road, Galway, Ireland.
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4
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Pauletto M, Milan M, Huvet A, Corporeau C, Suquet M, Planas JV, Moreira R, Figueras A, Novoa B, Patarnello T, Bargelloni L. Transcriptomic features of Pecten maximus oocyte quality and maturation. PLoS One 2017; 12:e0172805. [PMID: 28253290 PMCID: PMC5333834 DOI: 10.1371/journal.pone.0172805] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2016] [Accepted: 02/09/2017] [Indexed: 11/19/2022] Open
Abstract
The king scallop Pecten maximus is a high valuable species of great interest in Europe for both fishery and aquaculture. Notably, there has been an increased investment to produce seed for enhancement programmes of wild scallop populations. However, hatchery production is a relatively new industry and it is still underdeveloped. Major hurdles are spawning control and gamete quality. In the present study, a total of 14 scallops were sampled in the bay of Brest (Brittany, France) to compare transcriptomic profiles of mature oocytes collected by spawning induction or by stripping. To reach such a goal, a microarray analysis was performed by using a custom 8x60K oligonucleotide microarray representing 45,488 unique scallop contigs. First we identified genes that were differentially expressed depending on oocyte quality, estimated as the potential to produce D-larvae. Secondly, we investigated the transcriptional features of both stripped and spawned oocytes. Genes coding for proteins involved in cytoskeletal dynamics, serine/threonine kinases signalling pathway, mRNA processing, response to DNA damage, apoptosis and cell-cycle appeared to be of crucial importance for both oocyte maturation and developmental competence. This study allowed us to dramatically increase the knowledge about transcriptional features of oocyte quality and maturation, as well as to propose for the first time putative molecular markers to solve a major bottleneck in scallop aquaculture.
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Affiliation(s)
- Marianna Pauletto
- Department of Comparative Biomedicine and Food Science, University of Padova, Legnaro, Padova, Italy
| | - Massimo Milan
- Department of Comparative Biomedicine and Food Science, University of Padova, Legnaro, Padova, Italy
| | - Arnaud Huvet
- Ifremer, UMR 6539 CNRS/UBO/IRD/Ifremer, Laboratoire des sciences de l’Environnement Marin (LEMAR), Plouzané, France
| | - Charlotte Corporeau
- Ifremer, UMR 6539 CNRS/UBO/IRD/Ifremer, Laboratoire des sciences de l’Environnement Marin (LEMAR), Plouzané, France
| | - Marc Suquet
- Ifremer, UMR 6539 CNRS/UBO/IRD/Ifremer, Laboratoire des sciences de l’Environnement Marin (LEMAR), Plouzané, France
| | - Josep V. Planas
- Departament de Fisiologia i Immunologia, Facultat de Biologia, Universitat de Barcelona i Institut de Biomedicina de la Universitat de Barcelona, Barcelona, Spain
| | - Rebeca Moreira
- Instituto de Investigaciones Marinas (IIM-CSIC), Vigo, Pontevedra, Spain
| | - Antonio Figueras
- Instituto de Investigaciones Marinas (IIM-CSIC), Vigo, Pontevedra, Spain
| | - Beatriz Novoa
- Instituto de Investigaciones Marinas (IIM-CSIC), Vigo, Pontevedra, Spain
| | - Tomaso Patarnello
- Department of Comparative Biomedicine and Food Science, University of Padova, Legnaro, Padova, Italy
| | - Luca Bargelloni
- Department of Comparative Biomedicine and Food Science, University of Padova, Legnaro, Padova, Italy
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Bassim S, Chapman RW, Tanguy A, Moraga D, Tremblay R. Predicting growth and mortality of bivalve larvae using gene expression and supervised machine learning. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 2015; 16:59-72. [PMID: 26282335 DOI: 10.1016/j.cbd.2015.07.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2015] [Revised: 07/13/2015] [Accepted: 07/24/2015] [Indexed: 10/23/2022]
Abstract
It is commonly known that the nature of the diet has diverse consequences on larval performance and longevity, however it is still unclear which genes have critical impacts on bivalve development and which pathways are of particular importance in their vulnerability or resistance. First we show that a diet deficient in essential fatty acid (EFA) produces higher larval mortality rates, a reduced shell growth, and lower postlarval performance, all of which are positively correlated with a decline in arachidonic and eicosapentaenoic acids levels, two EFAs known as eicosanoid precursors. Eicosanoids affect the cell inflammatory reactions and are synthesized from long-chain EFAs. Second, we show for the first time that a deficiency in eicosanoid precursors is associated with a network of 29 genes. Their differential regulation can lead to slower growth and higher mortality of Mytilus edulis larvae. Some of these genes are specific to bivalves and others are implicated at the same time in lipid metabolism and defense. Several genes are expressed only during pre-metamorphosis where they are essential for muscle or neurone development and biomineralization, but only in stress-induced larvae. Finally, we discuss how our networks of differentially expressed genes might dynamically alter the development of marine bivalves, especially under dietary influence.
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Affiliation(s)
- Sleiman Bassim
- Institut des Sciences de la mer de Rimouski, Universite du Quebec a Rimouski, 310, allee des Ursulines, Rimouski Quebec G5L 3A1, Canada; Laboratoire des Sciences de l'Environnement Marin, Institut Universitaire Europeen de la Mer, Universite de Bretagne Occidentale, Rue Dumont d'Urville, 29280 Plouzane, France
| | - Robert W Chapman
- Marine Resources Research Institute, South Carolina Department of Natural Resources and Hollings Marine Laboratory, 331 Ft. Johnson Road, Charleston, SC 29412, USA
| | - Arnaud Tanguy
- UPMC Universite Paris 6, UMR 7144, Genetique et Adaptation en Milieu Extreme, Station Biologique de Roscoff, France
| | - Dario Moraga
- Laboratoire des Sciences de l'Environnement Marin, Institut Universitaire Europeen de la Mer, Universite de Bretagne Occidentale, Rue Dumont d'Urville, 29280 Plouzane, France
| | - Rejean Tremblay
- Institut des Sciences de la mer de Rimouski, Universite du Quebec a Rimouski, 310, allee des Ursulines, Rimouski Quebec G5L 3A1, Canada.
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6
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Genetic structure of a commercially exploited bivalve, the great scallop Pecten maximus, along the European coasts. CONSERV GENET 2015. [DOI: 10.1007/s10592-015-0760-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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7
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Bassim S, Tanguy A, Genard B, Moraga D, Tremblay R. Identification of Mytilus edulis genetic regulators during early development. Gene 2014; 551:65-78. [PMID: 25158132 DOI: 10.1016/j.gene.2014.08.042] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2014] [Revised: 06/24/2014] [Accepted: 08/22/2014] [Indexed: 01/23/2023]
Abstract
Understanding the mechanisms that enable growth and survival of an organism while driving it to the full range of its adaptation is fundamental to the issues of biodiversity and evolution, particularly regarding global climatic changes. Here we report the Illumina RNA-sequencing (RNA-seq) and de novo assembly of the blue mussel Mytilus edulis transcriptome during early development. This study is based on high-throughput data, which associates genome-wide differentially expressed transcript (DET) patterns with early activation of developmental processes. Approximately 50,383 high-quality contigs were assembled. Over 8000 transcripts were associated with functional proteins from public databases. Coding and non-coding genes served to design customized microarrays targeting every developmental stage, which encompass major transitions in tissue organization. Consequently, multi-processing pattern exploration protocols applied to 3633 DETs helped discover 12 unique coordinated eigengenes supposedly implicated in various physiological and morphological changes that larvae undergo during early development. Moreover, dynamic Bayesian networks (DBNs) provided key insights to understand stage-specific molecular mechanisms activated throughout ontogeny. In addition, delayed and contemporaneous interactions between DETs were coerced with 16 relevant regulators that interrelated in non-random genetic regulatory networks (GRNs). Genes associated with mechanisms of neural and muscular development have been characterized and further included in dynamic networks necessary in growth and functional morphology. This is the first large-scale study being dedicated to M. edulis throughout early ontogeny. Integration between RNA-seq and microarray data enabled a high-throughput exploration of hidden processes essential in growth and survival of microscopic mussel larvae. Our integrative approach will support a holistic understanding of systems biology and will help establish new links between environmental assessment and functional development of marine bivalves.
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Affiliation(s)
- Sleiman Bassim
- Institut des Sciences de la Mer de Rimouski, Université du Québec à Rimouski, 310 allée des Ursulines, Rimouski, Québec G5L3A1, Canada; Laboratoire des Sciences de l'Environnement Marin, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Rue Dumont d'Urville, 29280 Plouzané, France
| | - Arnaud Tanguy
- UPMC Université Paris 6, UMR 7144, Génétique et adaptation en milieu extrême, Station biologique de Roscoff, France
| | - Bertrand Genard
- Institut des Sciences de la Mer de Rimouski, Université du Québec à Rimouski, 310 allée des Ursulines, Rimouski, Québec G5L3A1, Canada
| | - Dario Moraga
- Laboratoire des Sciences de l'Environnement Marin, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Rue Dumont d'Urville, 29280 Plouzané, France
| | - Rejean Tremblay
- Institut des Sciences de la Mer de Rimouski, Université du Québec à Rimouski, 310 allée des Ursulines, Rimouski, Québec G5L3A1, Canada.
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