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Number Cited by Other Article(s)
1
Wang Y, Zheng P, Cheng YC, Wang Z, Aravkin A. WENDY: Covariance dynamics based gene regulatory network inference. Math Biosci 2024;377:109284. [PMID: 39168402 DOI: 10.1016/j.mbs.2024.109284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Revised: 06/25/2024] [Accepted: 08/16/2024] [Indexed: 08/23/2024]
2
Ribeiro AH, Vidal MC, Sato JR, Fujita A. Granger Causality among Graphs and Application to Functional Brain Connectivity in Autism Spectrum Disorder. ENTROPY (BASEL, SWITZERLAND) 2021;23:1204. [PMID: 34573829 PMCID: PMC8465687 DOI: 10.3390/e23091204] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Revised: 09/06/2021] [Accepted: 09/08/2021] [Indexed: 11/28/2022]
3
Furqan MS, Siyal MY. Elastic-Net Copula Granger Causality for Inference of Biological Networks. PLoS One 2016;11:e0165612. [PMID: 27792750 PMCID: PMC5085021 DOI: 10.1371/journal.pone.0165612] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2016] [Accepted: 10/15/2016] [Indexed: 12/13/2022]  Open
4
A tutorial to identify nonlinear associations in gene expression time series data. Methods Mol Biol 2014;1164:87-95. [PMID: 24927837 DOI: 10.1007/978-1-4939-0805-9_8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/21/2023]
5
Functional clustering of time series gene expression data by Granger causality. BMC SYSTEMS BIOLOGY 2012;6:137. [PMID: 23107425 PMCID: PMC3573927 DOI: 10.1186/1752-0509-6-137] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/14/2011] [Accepted: 10/17/2012] [Indexed: 12/04/2022]
6
Kojima K, Imoto S, Yamaguchi R, Fujita A, Yamauchi M, Gotoh N, Miyano S. Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing. BMC Genomics 2012;13 Suppl 1:S6. [PMID: 22369122 PMCID: PMC3587380 DOI: 10.1186/1471-2164-13-s1-s6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]  Open
7
Wong L. BRIEF INTRODUCTION TO SOME NEW RESULTS IN GENE EXPRESSION ANALYSIS, SYSTEMS BIOLOGY MODELING, MOTIF IDENTIFICATION, AND (NONCODING) RNA ANALYSIS. J Bioinform Comput Biol 2011. [DOI: 10.1142/s0219720010005026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
8
Wu GR, Chen F, Kang D, Zhang X, Marinazzo D, Chen H. Multiscale causal connectivity analysis by canonical correlation: theory and application to epileptic brain. IEEE Trans Biomed Eng 2011;58:3088-96. [PMID: 21788178 DOI: 10.1109/tbme.2011.2162669] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
9
Fujita A, Kojima K, Patriota AG, Sato JR, Severino P, Miyano S. A fast and robust statistical test based on likelihood ratio with Bartlett correction to identify Granger causality between gene sets. ACTA ACUST UNITED AC 2010;26:2349-51. [PMID: 20660295 DOI: 10.1093/bioinformatics/btq427] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
10
Granger Causality in Systems Biology: Modeling Gene Networks in Time Series Microarray Data Using Vector Autoregressive Models. ADVANCES IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY 2010. [DOI: 10.1007/978-3-642-15060-9_2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
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