1
|
Saffouri GB, Shields-Cutler RR, Chen J, Yang Y, Lekatz HR, Hale VL, Cho JM, Battaglioli EJ, Bhattarai Y, Thompson KJ, Kalari KK, Behera G, Berry JC, Peters SA, Patel R, Schuetz AN, Faith JJ, Camilleri M, Sonnenburg JL, Farrugia G, Swann JR, Grover M, Knights D, Kashyap PC. Small intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders. Nat Commun 2019; 10:2012. [PMID: 31043597 PMCID: PMC6494866 DOI: 10.1038/s41467-019-09964-7] [Citation(s) in RCA: 129] [Impact Index Per Article: 25.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2018] [Accepted: 04/03/2019] [Indexed: 12/18/2022] Open
Abstract
Small intestinal bacterial overgrowth (SIBO) has been implicated in symptoms associated with functional gastrointestinal disorders (FGIDs), though mechanisms remain poorly defined and treatment involves non-specific antibiotics. Here we show that SIBO based on duodenal aspirate culture reflects an overgrowth of anaerobes, does not correspond with patient symptoms, and may be a result of dietary preferences. Small intestinal microbial composition, on the other hand, is significantly altered in symptomatic patients and does not correspond with aspirate culture results. In a pilot interventional study we found that switching from a high fiber diet to a low fiber, high simple sugar diet triggered FGID-related symptoms and decreased small intestinal microbial diversity while increasing small intestinal permeability. Our findings demonstrate that characterizing small intestinal microbiomes in patients with gastrointestinal symptoms may allow a more targeted antibacterial or a diet-based approach to treatment.
Collapse
Affiliation(s)
- George B Saffouri
- Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55902, USA
| | - Robin R Shields-Cutler
- BioTechnology Institute, College of Biological Sciences, University of Minnesota, Minneapolis, MN, 55455, USA
- Department of Biology, Macalester College, Saint Paul, MN, 55105, USA
| | - Jun Chen
- Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN, 55902, USA
| | - Yi Yang
- Computational and Systems Medicine Section of the Department of Surgery and Cancer, Imperial College, (London), UK
| | - Heather R Lekatz
- Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55902, USA
| | - Vanessa L Hale
- Department of Veterinary Preventive Medicine, The Ohio State University, Columbus, OH, 43210, USA
| | - Janice M Cho
- Division of Internal Medicine, Mayo Clinic, Rochester, MN, 55902, USA
| | - Eric J Battaglioli
- Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55902, USA
| | - Yogesh Bhattarai
- Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55902, USA
| | - Kevin J Thompson
- Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN, 55902, USA
| | - Krishna K Kalari
- Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN, 55902, USA
| | - Gaurav Behera
- Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55902, USA
| | - Jonathan C Berry
- Division of Clinical Microbiology, Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55902, USA
| | - Stephanie A Peters
- Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55902, USA
| | - Robin Patel
- Division of Clinical Microbiology, Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55902, USA
| | - Audrey N Schuetz
- Division of Clinical Microbiology, Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55902, USA
| | - Jeremiah J Faith
- Department of Genetics and Genomic Sciences, Medicine, and Clinical Immunology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA
| | - Michael Camilleri
- Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55902, USA
- Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN, 55902, USA
| | - Justin L Sonnenburg
- Department of Microbiology and Immunology, Stanford University, Stanford, CA, 94305, USA
| | - Gianrico Farrugia
- Division of Gastroenterology, Mayo Clinic, Jacksonville, FL, 32224, USA
| | - Jonathan R Swann
- Computational and Systems Medicine Section of the Department of Surgery and Cancer, Imperial College, (London), UK
| | - Madhusudan Grover
- Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55902, USA
- Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN, 55902, USA
| | - Dan Knights
- BioTechnology Institute, College of Biological Sciences, University of Minnesota, Minneapolis, MN, 55455, USA
- Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, 55455, USA
| | - Purna C Kashyap
- Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55902, USA.
- Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN, 55902, USA.
| |
Collapse
|
3
|
Kuizenga MH, Sia TC, Dodds KN, Wiklendt L, Arkwright JW, Thomas A, Brookes SJ, Spencer NJ, Wattchow DA, Dinning PG, Costa M. Neurally mediated propagating discrete clustered contractions superimposed on myogenic ripples in ex vivo segments of human ileum. Am J Physiol Gastrointest Liver Physiol 2015; 308:G1-G11. [PMID: 25394659 DOI: 10.1152/ajpgi.00230.2014] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
Narrow muscle strips have been extensively used to study intestinal contractility. Larger specimens from laboratory animals have provided detailed understanding of mechanisms that underlie patterned intestinal motility. Despite progress in animal tissue, investigations of motor patterns in large, intact specimens of human gut ex vivo have been sparse. In this study, we tested whether neurally dependent motor patterns could be detected in isolated specimens of intact human ileum. Specimens (n = 14; 7-30 cm long) of terminal ileum were obtained with prior informed consent from patients undergoing colonic surgery for removal of carcinomas. Preparations were set up in an organ bath with an array of force transducers, a fiberoptic manometry catheter, and a video camera. Spontaneous and distension-evoked motor activity was recorded, and the effects of lidocaine, which inhibits neural activity, were studied. Myogenic contractions (ripples) occurred in all preparations (6.17 ± 0.36/min). They were of low amplitude and formed complex patterns by colliding and propagating in both directions along the specimen at anterograde velocities of 4.1 ± 0.3 mm/s and retrogradely at 4.9 ± 0.6 mm/s. In five specimens, larger amplitude clusters of contractions were seen (discrete clustered contractions), which propagated aborally at 1.05 ± 0.13 mm/s and orally at 1.07 ± 0.09 mm/s. These consisted of two to eight phasic contractions that aligned with ripples. These motor patterns were abolished by addition of lidocaine (0.3 mM). The ripples continued unchanged in the presence of this neural blocking agent. These results demonstrate that both myogenic and neurogenic motor patterns can be studied in isolated specimens of human small intestine.
Collapse
Affiliation(s)
- Merel H Kuizenga
- Discipline of Human Physiology, Flinders University, Adelaide, South Australia, Australia
| | - Tiong C Sia
- Discipline of Human Physiology, Flinders University, Adelaide, South Australia, Australia
| | - Kelsi N Dodds
- Discipline of Human Physiology, Flinders University, Adelaide, South Australia, Australia
| | - Lukasz Wiklendt
- Discipline of Human Physiology, Flinders University, Adelaide, South Australia, Australia
| | - John W Arkwright
- Discipline of Computer Science, Engineering and Mathematics, Flinders University, Adelaide, South Australia, Australia
| | - A Thomas
- Department of Surgical Pathology, Flinders Medical Centre, Bedford Park, South Australia, Australia
| | - Simon J Brookes
- Discipline of Human Physiology, Flinders University, Adelaide, South Australia, Australia
| | - Nick J Spencer
- Discipline of Human Physiology, Flinders University, Adelaide, South Australia, Australia
| | - David A Wattchow
- Discipline of Human Physiology, Flinders University, Adelaide, South Australia, Australia; Departments of Gastroenterology and Surgery, Flinders Medical Centre, Bedford Park, South Australia, Australia
| | - Phil G Dinning
- Discipline of Human Physiology, Flinders University, Adelaide, South Australia, Australia; Departments of Gastroenterology and Surgery, Flinders Medical Centre, Bedford Park, South Australia, Australia
| | - Marcello Costa
- Discipline of Human Physiology, Flinders University, Adelaide, South Australia, Australia;
| |
Collapse
|
5
|
Costa M, Wiklendt L, Arkwright JW, Spencer NJ, Omari T, Brookes SJH, Dinning PG. An experimental method to identify neurogenic and myogenic active mechanical states of intestinal motility. Front Syst Neurosci 2013; 7:7. [PMID: 23596400 PMCID: PMC3622892 DOI: 10.3389/fnsys.2013.00007] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2012] [Accepted: 03/25/2013] [Indexed: 01/28/2023] Open
Abstract
Excitatory and inhibitory enteric neural input to intestinal muscle acting on ongoing myogenic activity determines the rich repertoire of motor patterns involved in digestive function. The enteric neural activity cannot yet be established during movement of intact intestine in vivo or in vitro. We propose the hypothesis that is possible to deduce indirectly, but reliably, the state of activation of the enteric neural input to the muscle from measurements of the mechanical state of the intestinal muscle. The fundamental biomechanical model on which our hypothesis is based is the “three-element model” proposed by Hill. Our strategy is based on simultaneous video recording of changes in diameters and intraluminal pressure with a fiber-optic manometry in isolated segments of rabbit colon. We created a composite spatiotemporal map (DPMap) from diameter (DMap) and pressure changes (PMaps). In this composite map rhythmic myogenic motor patterns can readily be distinguished from the distension induced neural peristaltic contractions. Plotting the diameter changes against corresponding pressure changes at each location of the segment, generates “orbits” that represent the state of the muscle according to its ability to contract or relax actively or undergoing passive changes. With a software developed in MatLab, we identified twelve possible discrete mechanical states and plotted them showing where the intestine actively contracted and relaxed isometrically, auxotonically or isotonically, as well as where passive changes occurred or was quiescent. Clustering all discrete active contractions and relaxations states generated for the first time a spatio-temporal map of where enteric excitatory and inhibitory neural input to the muscle occurs during physiological movements. Recording internal diameter by an impedance probe proved equivalent to measuring external diameter, making possible to further develop similar strategy in vivo and humans.
Collapse
Affiliation(s)
- Marcello Costa
- Department of Human Physiology, School of Medicine, Flinders University Bedford Park, SA, South Australia
| | | | | | | | | | | | | |
Collapse
|
6
|
Lammers WJEP, Ver Donck L, Schuurkes JAJ, Stephen B. Peripheral pacemakers and patterns of slow wave propagation in the canine small intestine in vivo. Can J Physiol Pharmacol 2006; 83:1031-43. [PMID: 16391712 DOI: 10.1139/y05-084] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
In an anesthetized, open-abdomen, canine model, the propagation pattern of the slow wave and its direction, velocity, amplitude, and frequency were investigated in the small intestine of 8 dogs. Electrical recordings were made using a 240-electrode array from 5 different sites, spanning the length of the small intestine. The majority of slow waves propagated uniformly and aborally (84%). In several cases, however, other patterns were found including propagation in the oral direction (11%) and propagation block (2%). In addition, in 69 cases (3%), a slow wave was initiated at a local site beneath the electrode array. Such peripheral pacemakers were found throughout the entire intestine. The frequency, velocity, and amplitude of slow waves were highest in the duodenum and gradually declined along the intestine reaching lowest values in the distal ileum (from 17.4+/-1.7 c/min to 12.2+/-0.7 c/min; 10.5+/-2.4 cm/s to 0.8+/-0.2 cm/s, and 1.20+/-0.35 mV to 0.31+/-0.10 mV, respectively; all p<0.001). Consequently, the wavelength of the slow wave was strongly reduced from 36.4+/-0.8 cm to 3.7 +/- 0.1 cm (p<0.001). We conclude that the patterns of slow wave propagation are usually, though not always, uniform in the canine small intestine and that the gradient in the wavelength will influence the patterns of local contractions.
Collapse
Affiliation(s)
- Wim J E P Lammers
- Department of Physiology, Faculty of Medicine and Health Sciences, United Arab Emirates University, Al Ain, United Arab Emirates.
| | | | | | | |
Collapse
|
9
|
Moravec M, Moravec J. Intrinsic innervation of the atrioventricular junction of the rat heart. THE AMERICAN JOURNAL OF ANATOMY 1984; 171:307-19. [PMID: 6517033 DOI: 10.1002/aja.1001710307] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Alternate serial semithin and thin sections of the glutaraldehyde-fixed interatrial septum and atrioventricular junction of adult rat were examined in light and electron microscopes. The animals were pretreated with a false precursor of catecholamines, i.e., with 5-OH-dopamine, in order to differentiate the adrenergic component of the intrinsic nervous system. According to the light microscope data, two kinds of ganglia can be distinguished at the level of the interatrial septum. Those of the first kind are composed of large pale cells with voluminous nuclei. Those of the other kind resemble acinuslike clusters of small osmiophilic cells. Another small ganglion is invariably associated with the distal edge of the bundle of His. At the electron-microscope level, two types of ganglionic cells are found in the meshes of the peri- and intranodal plexus: 1) small neurons (10 microns) with richly developed neuropiles, and 2) large 5-OH-dopamine contrasted neurosecretory cells (up to 25 microns) containing electron-dense vesicles typical of sympathetic neurons. Numerous glomeruli with dendrodendritic and axodendritic connections are also found in the vicinity of the specialized tissue; and, in the nodal interstitium, several clusters of small chromaffin cells (5 microns) and a network of multipolar satellite cells similar to the interstitial cells of Cajal can be distinguished. Our data suggest that the microanatomical and cytological organization of the terminal innervation of the node of Aschoff-Tawara and of the bundle to His resembles that of the myenteric plexus. The physiological significance of these ultrastructural data for the local control of electrophysiological properties of the atrioventricular junction is briefly considered.
Collapse
|