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Williams E, Payeur A, Gidon A, Naud R. Neural burst codes disguised as rate codes. Sci Rep 2021; 11:15910. [PMID: 34354118 PMCID: PMC8342467 DOI: 10.1038/s41598-021-95037-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Accepted: 07/13/2021] [Indexed: 02/07/2023] Open
Abstract
The burst coding hypothesis posits that the occurrence of sudden high-frequency patterns of action potentials constitutes a salient syllable of the neural code. Many neurons, however, do not produce clearly demarcated bursts, an observation invoked to rule out the pervasiveness of this coding scheme across brain areas and cell types. Here we ask how detrimental ambiguous spike patterns, those that are neither clearly bursts nor isolated spikes, are for neuronal information transfer. We addressed this question using information theory and computational simulations. By quantifying how information transmission depends on firing statistics, we found that the information transmitted is not strongly influenced by the presence of clearly demarcated modes in the interspike interval distribution, a feature often used to identify the presence of burst coding. Instead, we found that neurons having unimodal interval distributions were still able to ascribe different meanings to bursts and isolated spikes. In this regime, information transmission depends on dynamical properties of the synapses as well as the length and relative frequency of bursts. Furthermore, we found that common metrics used to quantify burstiness were unable to predict the degree with which bursts could be used to carry information. Our results provide guiding principles for the implementation of coding strategies based on spike-timing patterns, and show that even unimodal firing statistics can be consistent with a bivariate neural code.
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Affiliation(s)
- Ezekiel Williams
- grid.28046.380000 0001 2182 2255Department of Mathematics and Statistics, University of Ottawa, 150 Louis Pasteur, Ottawa, K1N 6N5 Canada
| | - Alexandre Payeur
- grid.28046.380000 0001 2182 2255University of Ottawa Brain and Mind Institute, Centre for Neural Dynamics, Department of Cellular and Molecular Medicine, University of Ottawa, 451 Smyth Rd., Ottawa, K1H 8M5 Canada
| | - Albert Gidon
- grid.7468.d0000 0001 2248 7639Institute for Biology, Humboldt-Universität zu Berlin, Berlin, Germany
| | - Richard Naud
- grid.28046.380000 0001 2182 2255University of Ottawa Brain and Mind Institute, Centre for Neural Dynamics, Department of Cellular and Molecular Medicine, University of Ottawa, 451 Smyth Rd., Ottawa, K1H 8M5 Canada ,grid.28046.380000 0001 2182 2255Department of Physics, University of Ottawa, 150 Louis Pasteur, Ottawa, K1N 6N5 Canada
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2
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Motipally SI, Allen KM, Williamson DK, Marsat G. Differences in Sodium Channel Densities in the Apical Dendrites of Pyramidal Cells of the Electrosensory Lateral Line Lobe. Front Neural Circuits 2019; 13:41. [PMID: 31213991 PMCID: PMC6558084 DOI: 10.3389/fncir.2019.00041] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2019] [Accepted: 05/20/2019] [Indexed: 12/22/2022] Open
Abstract
Heterogeneity of neural properties within a given neural class is ubiquitous in the nervous system and permits different sub-classes of neurons to specialize for specific purposes. This principle has been thoroughly investigated in the hindbrain of the weakly electric fish A. leptorhynchus in the primary electrosensory area, the Electrosensory Lateral Line lobe (ELL). The pyramidal cells (PCs) that receive inputs from tuberous electroreceptors are organized in three maps in distinct segments of the ELL. The properties of these cells vary greatly across maps due to differences in connectivity, receptor expression, and ion channel composition. These cells are a seminal example of bursting neurons and their bursting dynamic relies on the presence of voltage-gated Na+ channels in the extensive apical dendrites of the superficial PCs. Other ion channels can affect burst generation and their expression varies across ELL neurons and segments. For example, SK channels cause hyperpolarizing after-potentials decreasing the likelihood of bursting, yet bursting propensity is similar across segments. We question whether the depolarizing mechanism that generates the bursts presents quantitative differences across segments that could counterbalance other differences having the opposite effect. Although their presence and role are established, the distribution and density of the apical dendrites' Na+ channels have not been quantified and compared across ELL maps. Therefore, we test the hypothesis that Na+ channel density varies across segment by quantifying their distribution in the apical dendrites of immunolabeled ELL sections. We found the Na+ channels to be two-fold denser in the lateral segment (LS) than in the centro-medial segment (CMS), the centro-lateral segment (CLS) being intermediate. Our results imply that this differential expression of voltage-gated Na+ channels could counterbalance or interact with other aspects of neuronal physiology that vary across segments (e.g., SK channels). We argue that burst coding of sensory signals, and the way the network regulates bursting, should be influenced by these variations in Na+ channel density.
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Affiliation(s)
- Sree I Motipally
- Department of Biology, West Virginia University, Morgantown, WV, United States
| | - Kathryne M Allen
- Department of Biology, West Virginia University, Morgantown, WV, United States
| | - Daniel K Williamson
- Department of Biology, West Virginia University, Morgantown, WV, United States
| | - Gary Marsat
- Department of Biology, West Virginia University, Morgantown, WV, United States
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3
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Metzen MG, Krahe R, Chacron MJ. Burst Firing in the Electrosensory System of Gymnotiform Weakly Electric Fish: Mechanisms and Functional Roles. Front Comput Neurosci 2016; 10:81. [PMID: 27531978 PMCID: PMC4969294 DOI: 10.3389/fncom.2016.00081] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2016] [Accepted: 07/20/2016] [Indexed: 11/13/2022] Open
Abstract
Neurons across sensory systems and organisms often display complex patterns of action potentials in response to sensory input. One example of such a pattern is the tendency of neurons to fire packets of action potentials (i.e., a burst) followed by quiescence. While it is well known that multiple mechanisms can generate bursts of action potentials at both the single-neuron and the network level, the functional role of burst firing in sensory processing is not so well understood to date. Here we provide a comprehensive review of the known mechanisms and functions of burst firing in processing of electrosensory stimuli in gymnotiform weakly electric fish. We also present new evidence from existing data showing that bursts and isolated spikes provide distinct information about stimulus variance. It is likely that these functional roles will be generally applicable to other systems and species.
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Affiliation(s)
- Michael G Metzen
- Department of Physiology, McGill University Montreal, QC, Canada
| | - Rüdiger Krahe
- Department of Biology, McGill University Montreal, QC, Canada
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4
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Mensi S, Naud R, Pozzorini C, Avermann M, Petersen CCH, Gerstner W. Parameter extraction and classification of three cortical neuron types reveals two distinct adaptation mechanisms. J Neurophysiol 2011; 107:1756-75. [PMID: 22157113 DOI: 10.1152/jn.00408.2011] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Cortical information processing originates from the exchange of action potentials between many cell types. To capture the essence of these interactions, it is of critical importance to build mathematical models that reflect the characteristic features of spike generation in individual neurons. We propose a framework to automatically extract such features from current-clamp experiments, in particular the passive properties of a neuron (i.e., membrane time constant, reversal potential, and capacitance), the spike-triggered adaptation currents, as well as the dynamics of the action potential threshold. The stochastic model that results from our maximum likelihood approach accurately predicts the spike times, the subthreshold voltage, the firing patterns, and the type of frequency-current curve. Extracting the model parameters for three cortical cell types revealed that cell types show highly significant differences in the time course of the spike-triggered currents and moving threshold, that is, in their adaptation and refractory properties but not in their passive properties. In particular, GABAergic fast-spiking neurons mediate weak adaptation through spike-triggered currents only, whereas regular spiking excitatory neurons mediate adaptation with both moving threshold and spike-triggered currents. GABAergic nonfast-spiking neurons combine the two distinct adaptation mechanisms with reduced strength. Differences between cell types are large enough to enable automatic classification of neurons into three different classes. Parameter extraction is performed for individual neurons so that we find not only the mean parameter values for each neuron type but also the spread of parameters within a group of neurons, which will be useful for future large-scale computer simulations.
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Affiliation(s)
- Skander Mensi
- School of Computer and Communication Sciences and School of Life Sciences, Ecole Polytechnique Federale de Lausanne, 1015 Lausanne EPFL, Switzerland.
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5
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Khosravi-Hashemi N, Fortune ES, Chacron MJ. Coding movement direction by burst firing in electrosensory neurons. J Neurophysiol 2011; 106:1954-68. [PMID: 21775723 DOI: 10.1152/jn.00116.2011] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Directional selectivity, in which neurons respond strongly to an object moving in a given direction ("preferred") but respond weakly or not at all to an object moving in the opposite direction ("null"), is a critical computation achieved in brain circuits. Previous measures of direction selectivity have compared the numbers of action potentials elicited by each direction of movement, but most sensory neurons display patterning, such as bursting, in their spike trains. To examine the contribution of patterned responses to direction selectivity, we recorded from midbrain neurons in weakly electric fish and found that most neurons responded with a combination of both bursts and isolated spikes to moving object stimuli. In these neurons, we separated bursts and isolated spikes using an interspike interval (ISI) threshold. The directional bias of bursts was significantly higher than that of either the full spike train or the isolated spike train. To examine the encoding and decoding of bursts, we built biologically plausible models that examine 1) the upstream mechanisms that generate these spiking patterns and 2) downstream decoders of bursts. Our model of upstream mechanisms uses an interaction between afferent input and subthreshold calcium channels to give rise to burst firing that occurs preferentially for one direction of movement. We tested this model in vivo by application of calcium antagonists, which reduced burst firing and eliminated the differences in direction selectivity between bursts, isolated spikes, and the full spike train. Our model of downstream decoders used strong synaptic facilitation to achieve qualitatively similar results to those obtained using the ISI threshold criterion. This model shows that direction selective information carried by bursts can be decoded by downstream neurons using biophysically plausible mechanisms.
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6
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Aldworth ZN, Dimitrov AG, Cummins GI, Gedeon T, Miller JP. Temporal encoding in a nervous system. PLoS Comput Biol 2011; 7:e1002041. [PMID: 21573206 PMCID: PMC3088658 DOI: 10.1371/journal.pcbi.1002041] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2010] [Accepted: 03/19/2011] [Indexed: 11/29/2022] Open
Abstract
We examined the extent to which temporal encoding may be implemented by single neurons in the cercal sensory system of the house cricket Acheta domesticus. We found that these neurons exhibit a greater-than-expected coding capacity, due in part to an increased precision in brief patterns of action potentials. We developed linear and non-linear models for decoding the activity of these neurons. We found that the stimuli associated with short-interval patterns of spikes (ISIs of 8 ms or less) could be predicted better by second-order models as compared to linear models. Finally, we characterized the difference between these linear and second-order models in a low-dimensional subspace, and showed that modification of the linear models along only a few dimensions improved their predictive power to parity with the second order models. Together these results show that single neurons are capable of using temporal patterns of spikes as fundamental symbols in their neural code, and that they communicate specific stimulus distributions to subsequent neural structures. The information coding schemes used within nervous systems have been the focus of an entire field within neuroscience. An unresolved issue within the general coding problem is the determination of the neural “symbols” with which information is encoded in neural spike trains, analogous to the determination of the nucleotide sequences used to represent proteins in molecular biology. The goal of our study was to determine if pairs of consecutive action potentials contain more or different information about the stimuli that elicit them than would be predicted from an analysis of individual action potentials. We developed linear and non-linear coding models and used likelihood analysis to address this question for sensory interneurons in the cricket cercal sensory system. Our results show that these neurons' spike trains can be decomposed into sequences of two neural symbols: isolated single spikes and short-interval spike doublets. Given the ubiquitous nature of similar neural activity reported in other systems, we suspect that the implementation of such temporal encoding schemes may be widespread across animal phyla. Knowledge of the basic coding units used by single cells will help in building the large-scale neural network models necessary for understanding how nervous systems function.
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Affiliation(s)
- Zane N Aldworth
- Center for Computational Biology, Montana State University, Bozeman, Montana, United States of America.
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7
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Routing the flow of sensory signals using plastic responses to bursts and isolated spikes: experiment and theory. J Neurosci 2011; 31:2461-73. [PMID: 21325513 DOI: 10.1523/jneurosci.4672-10.2011] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Processing complex sensory environments efficiently requires a diverse array of neural coding strategies. Neural codes relying on specific temporal patterning of action potentials may offer advantages over using solely spike rate codes. In particular, stimulus-dependent burst firing may carry additional information that isolated spikes do not. We use the well characterized electrosensory system of weakly electric fish to address how stimulus-dependent burst firing can determine the flow of information in feedforward neural circuits with different forms of short-term synaptic plasticity. Pyramidal cells in the electrosensory lateral line lobe burst in response to low-frequency, local (prey) signals. We show that the ability of pyramidal cells to code for local signals in the presence of additional high-frequency, global (communication) stimuli is uncompromised, while burst firing is reduced. We developed a bursting neuron model to understand how these effects, in particular noise-induced burst suppression, arise from interplay between incoming sensory signals and intrinsic neuronal dynamics. Finally, we examined how postsynaptic target populations preferentially respond to one of the two sensory mixtures (local vs local plus global) depending on whether the populations are in receipt of facilitating or depressing synapses. This form of feedforward neural architecture may allow for efficient information flow in the same neural pathway via either isolated or burst spikes, where the mechanisms by which stimuli are encoded are adaptable and sensitive to a diverse array of stimulus and contextual mixtures.
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8
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Shih JY, Atencio CA, Schreiner CE. Improved stimulus representation by short interspike intervals in primary auditory cortex. J Neurophysiol 2011; 105:1908-17. [PMID: 21307320 DOI: 10.1152/jn.01055.2010] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
We analyzed the receptive field information conveyed by interspike intervals (ISIs) in the auditory cortex. In the visual system, different ISIs may both code for different visual features and convey differing amounts of stimulus information. To determine their potential role in auditory signal processing, we obtained extracellular recordings in the primary auditory cortex (AI) of the cat while presenting a dynamic moving ripple stimulus and then used the responses to construct spectrotemporal receptive fields (STRFs). For each neuron, we constructed three STRFs, one for short-ISI events (ISI < 15 ms); one for isolated, long-ISI events (ISI > 15 ms); and one including all events. To characterize stimulus encoding, we calculated the feature selectivity and event information for each of the STRFs. Short-ISI spikes were more feature selective and conveyed information more efficiently. The different ISI regimens of AI neurons did not represent different stimulus features, but short-ISI spike events did contribute over-proportionately to the full spike train STRF information. Thus short-ISIs constitute a robust representation of auditory features, and they are particularly effective at driving postsynaptic activity. This suggests that short-ISI events are especially suited to provide noise immunity and high-fidelity information transmission in AI.
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Affiliation(s)
- Jonathan Y Shih
- University of California, Berkeley, San Francisco Graduate Program in Bioengineering, CA, USA.
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9
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In vivo conditions influence the coding of stimulus features by bursts of action potentials. J Comput Neurosci 2011; 31:369-83. [PMID: 21271354 DOI: 10.1007/s10827-011-0313-4] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2010] [Revised: 12/11/2010] [Accepted: 01/13/2011] [Indexed: 10/18/2022]
Abstract
The functional role of burst firing (i.e. the firing of packets of action potentials followed by quiescence) in sensory processing is still under debate. Should bursts be considered as unitary events that signal the presence of a particular feature in the sensory environment or is information about stimulus attributes contained within their temporal structure? We compared the coding of stimulus attributes by bursts in vivo and in vitro of electrosensory pyramidal neurons in weakly electric fish by computing correlations between burst and stimulus attributes. Our results show that, while these correlations were strong in magnitude and significant in vitro, they were actually much weaker in magnitude if at all significant in vivo. We used a mathematical model of pyramidal neuron activity in vivo and showed that such a model could reproduce the correlations seen in vitro, thereby suggesting that differences in burst coding were not due to differences in bursting seen in vivo and in vitro. We next tested whether variability in the baseline (i.e. without stimulation) activity of ELL pyramidal neurons could account for these differences. To do so, we injected noise into our model whose intensity was calibrated to mimic baseline activity variability as quantified by the coefficient of variation. We found that this noise caused significant decreases in the magnitude of correlations between burst and stimulus attributes and could account for differences between in vitro and in vivo conditions. We then tested this prediction experimentally by directly injecting noise in vitro through the recording electrode. Our results show that this caused a lowering in magnitude of the correlations between burst and stimulus attributes in vitro and gave rise to values that were quantitatively similar to those seen under in vivo conditions. While it is expected that noise in the form of baseline activity variability will lower correlations between burst and stimulus attributes, our results show that such variability can account for differences seen in vivo. Thus, the high variability seen under in vivo conditions has profound consequences on the coding of information by bursts in ELL pyramidal neurons. In particular, our results support the viewpoint that bursts serve as a detector of particular stimulus features but do not carry detailed information about such features in their structure.
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10
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Avila-Akerberg O, Krahe R, Chacron MJ. Neural heterogeneities and stimulus properties affect burst coding in vivo. Neuroscience 2010; 168:300-13. [PMID: 20298764 DOI: 10.1016/j.neuroscience.2010.03.012] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2009] [Revised: 03/03/2010] [Accepted: 03/07/2010] [Indexed: 11/20/2022]
Abstract
Many neurons tend to fire clusters of action potentials called bursts followed by quiescence in response to sensory input. While the mechanisms that underlie burst firing are generally well understood in vitro, the functional role of these bursts in generating behavioral responses to sensory input in vivo are less clear. Pyramidal cells within the electrosensory lateral line lobe (ELL) of weakly electric fish offer an attractive model system for studying the coding properties of burst firing, because the anatomy and physiology of the electrosensory circuitry are well understood, and the burst mechanism of ELL pyramidal cells has been thoroughly characterized in vitro. We investigated the coding properties of bursts generated by these cells in vivo in response to mimics of behaviorally relevant sensory input. We found that heterogeneities within the pyramidal cell population had quantitative but not qualitative effects on burst coding for the low frequency components of broadband time varying input. Moreover, spatially localized stimuli mimicking, for example, prey tended to elicit more bursts than spatially global stimuli mimicking conspecific-related stimuli. We also found small but significant correlations between burst attributes such as the number of spikes per burst or the interspike interval during the burst and stimulus attributes such as stimulus amplitude or slope. These correlations were much weaker in magnitude than those observed in vitro. More surprisingly, our results show that correlations between burst and stimulus attributes actually decreased in magnitude when we used low frequency stimuli that are expected to promote burst firing. We propose that this discrepancy is attributable to differences between ELL pyramidal cell burst firing under in vivo and in vitro conditions.
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11
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Toporikova N, Chacron MJ. SK channels gate information processing in vivo by regulating an intrinsic bursting mechanism seen in vitro. J Neurophysiol 2009; 102:2273-87. [PMID: 19675292 DOI: 10.1152/jn.00282.2009] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Understanding the mechanistic substrates of neural computations that lead to behavior remains a fundamental problem in neuroscience. In particular, the contributions of intrinsic neural properties such as burst firing and dendritic morphology to the processing of behaviorally relevant sensory input have received much interest recently. Pyramidal cells within the electrosensory lateral line lobe of weakly electric fish display an intrinsic bursting mechanism that relies on somato-dendritic interactions when recorded in vitro: backpropagating somatic action potentials trigger dendritic action potentials that lead to a depolarizing afterpotential (DAP) at the soma. We recorded intracellularly from these neurons in vivo and found firing patterns that were quite different from those seen in vitro: we found no evidence for DAPs as each somatic action potential was followed by a pronounced afterhyperpolarization (AHP). Calcium chelators injected in vivo reduced the AHP, thereby unmasking the DAP and inducing in vitro-like bursting in pyramidal cells. These bursting dynamics significantly reduced the cell's ability to encode the detailed time course of sensory input. We performed additional in vivo pharmacological manipulations and mathematical modeling to show that calcium influx through N-methyl-d-aspartate (NMDA) receptors activate dendritic small conductance (SK) calcium-activated potassium channels, which causes an AHP that counteracts the DAP and leads to early termination of the burst. Our results show that ion channels located in dendrites can have a profound influence on the processing of sensory input by neurons in vivo through the modulation of an intrinsic bursting mechanism.
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Affiliation(s)
- Natalia Toporikova
- Department of Physiology, Center for Nonlinear Dynamics, McGill University, Montreal, Quebec, Canada
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12
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Shao J, Lai D, Meyer U, Luksch H, Wessel R. Generating oscillatory bursts from a network of regular spiking neurons without inhibition. J Comput Neurosci 2009; 27:591-606. [PMID: 19572191 DOI: 10.1007/s10827-009-0171-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2009] [Revised: 05/31/2009] [Accepted: 06/18/2009] [Indexed: 12/25/2022]
Abstract
Avian nucleus isthmi pars parvocellularis (Ipc) neurons are reciprocally connected with the layer 10 (L10) neurons in the optic tectum and respond with oscillatory bursts to visual stimulation. Our in vitro experiments show that both neuron types respond with regular spiking to somatic current injection and that the feedforward and feedback synaptic connections are excitatory, but of different strength and time course. To elucidate mechanisms of oscillatory bursting in this network of regularly spiking neurons, we investigated an experimentally constrained model of coupled leaky integrate-and-fire neurons with spike-rate adaptation. The model reproduces the observed Ipc oscillatory bursting in response to simulated visual stimulation. A scan through the model parameter volume reveals that Ipc oscillatory burst generation can be caused by strong and brief feedforward synaptic conductance changes. The mechanism is sensitive to the parameter values of spike-rate adaptation. In conclusion, we show that a network of regular-spiking neurons with feedforward excitation and spike-rate adaptation can generate oscillatory bursting in response to a constant input.
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Affiliation(s)
- Jing Shao
- Department of Physics, Washington University, St. Louis, MO 63130, USA.
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13
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Marsat G, Proville RD, Maler L. Transient signals trigger synchronous bursts in an identified population of neurons. J Neurophysiol 2009; 102:714-23. [PMID: 19474165 DOI: 10.1152/jn.91366.2008] [Citation(s) in RCA: 73] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
It is an important task in neuroscience to find general principles that relate neural codes to the structure of the signals they encode. The structure of sensory signals can be described in many ways, but one important categorization distinguishes continuous from transient signals. We used the communication signals of the weakly electric fish to reveal how transient signals (chirps) can be easily distinguished from the continuous signal they disrupt. These communication signals-low-frequency sinusoids interrupted by high-frequency transients-were presented to pyramidal cells of the electrosensory lateral line lobe (ELL) during in vivo recordings. We show that a specific population of electrosensory neurons encodes the occurrence of the transient signal by synchronously producing a burst of spikes, whereas bursting was neither common nor synchronous in response to the continuous signal. We also confirmed that burst can be triggered by low-frequency modulations typical of prey signals. However, these bursts are more common in a different segment of the ELL and during spatially localized stimulation. These localized stimuli will elicit synchronized bursting only in a restricted number of cells the receptive fields of which overlap the spatial extent of the stimulus. Therefore the number of cells simultaneously producing a burst and the ELL segment responding most strongly may carry the information required to disambiguate chirps from prey signals. Finally we show that the burst response to chirps is due to a biophysical mechanism previously characterized by in vitro studies of electrosensory neurons. We conclude that bursting and synchrony across cells are important mechanisms used by sensory neurons to carry the information about behaviorally relevant but transient signals.
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Affiliation(s)
- Gary Marsat
- Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Ontario, Canada.
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14
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Eyherabide HG, Rokem A, Herz AVM, Samengo I. Bursts generate a non-reducible spike-pattern code. Front Neurosci 2009; 3:8-14. [PMID: 19753092 PMCID: PMC2695386 DOI: 10.3389/neuro.01.002.2009] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2009] [Accepted: 02/21/2009] [Indexed: 12/03/2022] Open
Abstract
At the single-neuron level, precisely timed spikes can either constitute firing-rate codes or spike-pattern codes that utilize the relative timing between consecutive spikes. There has been little experimental support for the hypothesis that such temporal patterns contribute substantially to information transmission. By using grasshopper auditory receptors as a model system, we show that correlations between spikes can be used to represent behaviorally relevant stimuli. The correlations reflect the inner structure of the spike train: a succession of burst-like patterns. We demonstrate that bursts with different spike counts encode different stimulus features, such that about 20% of the transmitted information corresponds to discriminating between different features, and the remaining 80% is used to allocate these features in time. In this spike-pattern code, the what and the when of the stimuli are encoded in the duration of each burst and the time of burst onset, respectively. Given the ubiquity of burst firing, we expect similar findings also for other neural systems.
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Affiliation(s)
- Hugo G Eyherabide
- Bernstein Center for Computational Neuroscience and Institute for Theoretical Biology, Department of Biology, Humboldt Universität Berlin, Germany
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15
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Middleton JW, Longtin A, Benda J, Maler L. Postsynaptic receptive field size and spike threshold determine encoding of high-frequency information via sensitivity to synchronous presynaptic activity. J Neurophysiol 2008; 101:1160-70. [PMID: 19091925 DOI: 10.1152/jn.90814.2008] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Parallel sensory streams carrying distinct information about various stimulus properties have been observed in several sensory systems, including the visual system. What remains unclear is why some of these streams differ in the size of their receptive fields (RFs). In the electrosensory system, neurons with large RFs have short-latency responses and are tuned to high-frequency inputs. Conversely, neurons with small RFs are low-frequency tuned and exhibit longer-latency responses. What principle underlies this organization? We show experimentally that synchronous electroreceptor afferent (P-unit) spike trains selectively encode high-frequency stimulus information from broadband signals. This finding relies on a comparison of stimulus-spike output coherence using output trains obtained by either summing pairs of recorded afferent spike trains or selecting synchronous spike trains based on coincidence within a small time window. We propose a physiologically realistic decoding mechanism, based on postsynaptic RF size and postsynaptic output rate normalization that tunes target pyramidal cells in different electrosensory maps to low- or high-frequency signal components. By driving realistic neuron models with experimentally obtained P-unit spike trains, we show that a small RF is matched with a postsynaptic integration regime leading to responses over a broad range of frequencies, and a large RF with a fluctuation-driven regime that requires synchronous presynaptic input and therefore selectively encodes higher frequencies, confirming recent experimental data. Thus our work reveals that the frequency content of a broadband stimulus extracted by pyramidal cells, from P-unit afferents, depends on the amount of feedforward convergence they receive.
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Affiliation(s)
- Jason W Middleton
- Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Ontario, Canada.
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16
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Mehaffey WH, Fernandez FR, Doiron B, Turner RW. Regulation of somatic firing dynamics by backpropagating dendritic spikes. ACTA ACUST UNITED AC 2008; 102:181-94. [PMID: 18984047 DOI: 10.1016/j.jphysparis.2008.10.011] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
Pyramidal cells of the apteronotid ELL have been shown to display a characteristic mechanism of burst discharge, which has been shown to play an important role in sensory coding. This form of bursting depends on a reciprocal dendro-somatic interaction, in which discharge of a somatic spike causes a dendritic spike, which in turn contributes a dendro-somatic current flow to create a depolarizing afterpotential (DAP) in the soma. We review here our recent work showing how the timing of this DAP influences the somatic firing dynamics, and how the degree of inactivation of dendritic Na(+) currents can cause an increased delay between somatic and dendritic spikes. This ultimately allows the DAP to become more effective at increasing the excitability of the somatic spike generating mechanism. Further, this delay between dendritic and somatic spiking can be regulated by strongly hyperpolarizing GABA(B) mediated dendritic inhibition, allowing the burst dynamics to fall under synaptic regulation. In contrast, a weaker, shunting inhibition due to GABA(A) mediated dendritic inhibition can regulate the dendritic spike waveform to decrease the dendro-somatic current flow and the resulting DAP. We therefore show that the qualitative behaviour of an individual cell can depend on the degree of synaptic input, and the exact timing of events across the spatial extent of the neuron. Thus, our results serve to illustrate the complex dynamics that can be observed in cells with significant dendritic arborisation, a nearly ubiquitous adaptation amongst principal neurons.
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Affiliation(s)
- W Hamish Mehaffey
- Hotchkiss Brain Institute, University of Calgary, Calgary, Alberta, Canada
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17
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Eyherabide HG, Rokem A, Herz AVM, Samengo I. Burst firing is a neural code in an insect auditory system. Front Comput Neurosci 2008; 2:3. [PMID: 18946533 PMCID: PMC2525941 DOI: 10.3389/neuro.10.003.2008] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2008] [Accepted: 06/27/2008] [Indexed: 11/13/2022] Open
Abstract
Various classes of neurons alternate between high-frequency discharges and silent intervals. This phenomenon is called burst firing. To analyze burst activity in an insect system, grasshopper auditory receptor neurons were recorded in vivo for several distinct stimulus types. The experimental data show that both burst probability and burst characteristics are strongly influenced by temporal modulations of the acoustic stimulus. The tendency to burst, hence, is not only determined by cell-intrinsic processes, but also by their interaction with the stimulus time course. We study this interaction quantitatively and observe that bursts containing a certain number of spikes occur shortly after stimulus deflections of specific intensity and duration. Our findings suggest a sparse neural code where information about the stimulus is represented by the number of spikes per burst, irrespective of the detailed interspike-interval structure within a burst. This compact representation cannot be interpreted as a firing-rate code. An information-theoretical analysis reveals that the number of spikes per burst reliably conveys information about the amplitude and duration of sound transients, whereas their time of occurrence is reflected by the burst onset time. The investigated neurons encode almost half of the total transmitted information in burst activity.
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Affiliation(s)
- Hugo G Eyherabide
- Institute for Theoretical Biology, Department of Biology, Humboldt Universität Berlin, Germany
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18
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Mehaffey WH, Ellis LD, Krahe R, Dunn RJ, Chacron MJ. Ionic and neuromodulatory regulation of burst discharge controls frequency tuning. JOURNAL OF PHYSIOLOGY, PARIS 2008; 102:195-208. [PMID: 18992813 PMCID: PMC4529324 DOI: 10.1016/j.jphysparis.2008.10.019] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
Sensory neurons encode natural stimuli by changes in firing rate or by generating specific firing patterns, such as bursts. Many neural computations rely on the fact that neurons can be tuned to specific stimulus frequencies. It is thus important to understand the mechanisms underlying frequency tuning. In the electrosensory system of the weakly electric fish, Apteronotus leptorhynchus, the primary processing of behaviourally relevant sensory signals occurs in pyramidal neurons of the electrosensory lateral line lobe (ELL). These cells encode low frequency prey stimuli with bursts of spikes and high frequency communication signals with single spikes. We describe here how bursting in pyramidal neurons can be regulated by intrinsic conductances in a cell subtype specific fashion across the sensory maps found within the ELL, thereby regulating their frequency tuning. Further, the neuromodulatory regulation of such conductances within individual cells and the consequences to frequency tuning are highlighted. Such alterations in the tuning of the pyramidal neurons may allow weakly electric fish to preferentially select for certain stimuli under various behaviourally relevant circumstances.
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Affiliation(s)
- W. Hamish Mehaffey
- Hotchkiss Brain Institute, University of Calgary, Calgary, Alberta, Canada T2N 4N1
| | - Lee D. Ellis
- Center for Research in Neuroscience, McGill University, Montreal, QC, Canada H3G 1A4
| | - Rüdiger Krahe
- Department of Biology, McGill University, Montreal, QC, Canada H3A 1B1
| | - Robert J. Dunn
- Center for Research in Neuroscience, McGill University, Montreal, QC, Canada H3G 1A4
| | - Maurice J. Chacron
- Department of Physiology and Physics, Center for Non-linear Dynamics, McGill University, McIntyre Medical Sciences Building, 3655 Promenade Sir William Osler, Montréal, Québec, Canada H3G 1Y6
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19
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Mehaffey WH, Maler L, Turner RW. Intrinsic frequency tuning in ELL pyramidal cells varies across electrosensory maps. J Neurophysiol 2008; 99:2641-55. [PMID: 18367702 DOI: 10.1152/jn.00028.2008] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
The tuning of neuronal responsiveness to specific stimulus frequencies is an important computation across many sensory modalities. The weakly electric fish Apteronotus leptorhynchus detects amplitude modulations of a self-generated quasi-sinusoidal electric organ discharge to sense its environment. These fish have to parse a complicated electrosensory environment with a wide range of possible frequency content. One solution has been to create multiple representations of the sensory input across distinct maps in the electrosensory lateral line lobe (ELL) that participate in distinct behavioral functions. E- and I-type pyramidal cells in the ELL that process sensory input further exhibit a preferred range of stimulus frequencies in relation to the different behaviors and sensory maps. We tested the hypothesis that variations in the intrinsic spiking mechanism of E- and I-type pyramidal cells contribute to map-specific frequency tuning. We find that E-cells exhibit a systematic change in their intrinsic spike characteristics and frequency tuning across sensory maps, whereas I-cells are constant in both spike characteristics and frequency tuning. As frequency tuning becomes more high-pass in E-cells, the refractory variables of spike half-width and afterhyperpolarization magnitude increase, spike threshold increases, adaptation becomes faster, and the gain of the spiking response decreases. These findings indicate that frequency tuning across sensory maps in the ELL is supported by differences in the intrinsic spike characteristics of pyramidal cells, revealing a link between cellular biophysical properties and signal processing in sensory maps with defined behavioral roles.
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Affiliation(s)
- W Hamish Mehaffey
- Hotchkiss Brain Institute, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta, Canada
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20
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Schwalger T, Schimansky-Geier L. Interspike interval statistics of a leaky integrate-and-fire neuron driven by Gaussian noise with large correlation times. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2008; 77:031914. [PMID: 18517429 DOI: 10.1103/physreve.77.031914] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2007] [Revised: 12/19/2007] [Indexed: 05/26/2023]
Abstract
We analytically investigate the interspike interval (ISI) density, the Fano factor, and the coefficient of variation of a leaky integrate-and-fire neuron model driven by exponentially correlated Gaussian noise with a large correlation time tau . We find a burstinglike behavior of the spike train, which is revealed by a dominant peak of the ISI density at small intraburst intervals and a slow power-law decay of long interburst intervals. The large, power-law distributed ISIs give rise to a coefficient of variation which diverges as square root [tau] . This leads to the paradoxical effect that ISI correlations, as expressed by the serial correlation coefficient, vanish for large correlation times. This is in contrast to findings of previous works on a simpler neuron model where the effect of noise correlations appeared in higher-order statistical measures.
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Affiliation(s)
- Tilo Schwalger
- Humboldt-Universität Berlin, Newtonstrasse 15, D-12489 Berlin, Germany and RIKEN Brain Science Institute, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
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21
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Fujita K, Kashimori Y, Kambara T. Spatiotemporal burst coding for extracting features of spatiotemporally varying stimuli. BIOLOGICAL CYBERNETICS 2007; 97:293-305. [PMID: 17805559 DOI: 10.1007/s00422-007-0175-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2006] [Accepted: 07/27/2007] [Indexed: 05/17/2023]
Abstract
Encoding features of spatiotemporally varying stimuli is quite important for understanding the neural mechanisms of various sensory coding. Temporal coding can encode features of time-varying stimulus, and population coding with temporal coding is adequate for encoding spatiotemporal correlation of stimulus features into spatiotemporal activity of neurons. However, little is known about how spatiotemporal features of stimulus are encoded by spatiotemporal property of neural activity. To address this issue, we propose here a population coding with burst spikes, called here spatiotemporal burst (STB) coding. In STB coding, the temporal variation of stimuli is encoded by the precise onset timing of burst spike, and the spatiotemporal correlation of stimuli is emphasized by one specific aspect of burst firing, or spike packet followed by silent interval. To show concretely the role of STB coding, we study the electrosensory system of a weakly electric fish. Weakly electric fish must perceive the information about an object nearby by analyzing spatiotemporal modulations of electric field around it. On the basis of well-characterized circuitry, we constructed a neural network model of the electrosensory system. Here we show that STB coding encodes well the information of object distance and size by extracting the spatiotemporal correlation of the distorted electric field. The burst activity of electrosensory neurons is also affected by feedback signals through synaptic plasticity. We show that the control of burst activity caused by the synaptic plasticity leads to extracting the stimulus features depending on the stimulus context. Our results suggest that sensory systems use burst spikes as a unit of sensory coding in order to extract spatiotemporal features of stimuli from spatially distributed stimuli.
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Affiliation(s)
- Kazuhisa Fujita
- Department of Information Network Science, Graduate School of Information Systems, The University of Electro-Communications, Chofu, Tokyo 182-8585, Japan.
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22
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Ellis LD, Mehaffey WH, Harvey-Girard E, Turner RW, Maler L, Dunn RJ. SK channels provide a novel mechanism for the control of frequency tuning in electrosensory neurons. J Neurosci 2007; 27:9491-502. [PMID: 17728462 PMCID: PMC6673139 DOI: 10.1523/jneurosci.1106-07.2007] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
One important characteristic of sensory input is frequency, with sensory neurons often tuned to narrow stimulus frequency ranges. Although vital for many neural computations, the cellular basis of such frequency tuning remains mostly unknown. In the electrosensory system of Apteronotus leptorhynchus, the primary processing of important environmental and communication signals occurs in pyramidal neurons of the electrosensory lateral line lobe. Spike trains transmitted by these cells can encode low-frequency prey stimuli with bursts of spikes and high-frequency communication signals with single spikes. Here, we demonstrate that the selective expression of SK2 channels in a subset of pyramidal neurons reduces their response to low-frequency stimuli by opposing their burst responses. Apamin block of the SK2 current in this subset of cells induced bursting and increased their response to low-frequency inputs. SK channel expression thus provides an intrinsic mechanism that predisposes a neuron to respond to higher frequencies and thus specific, behaviorally relevant stimuli.
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Affiliation(s)
- Lee D. Ellis
- Center for Research in Neuroscience and Departments of Biology and Neurology, McGill University, Montreal, Quebec, Canada H3G 1A4
| | - W. Hamish Mehaffey
- Hotchkiss Brain Institute, University of Calgary, Calgary, Alberta, Canada T2N 4N1, and
| | - Erik Harvey-Girard
- Department of Cell and Molecular Medicine and Center for Neural Dynamics, University of Ottawa, Ottawa, Ontario, Canada K1H 8M5
| | - Ray W. Turner
- Hotchkiss Brain Institute, University of Calgary, Calgary, Alberta, Canada T2N 4N1, and
| | - Leonard Maler
- Department of Cell and Molecular Medicine and Center for Neural Dynamics, University of Ottawa, Ottawa, Ontario, Canada K1H 8M5
| | - Robert J. Dunn
- Center for Research in Neuroscience and Departments of Biology and Neurology, McGill University, Montreal, Quebec, Canada H3G 1A4
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23
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Oswald AMM, Doiron B, Maler L. Interval coding. I. Burst interspike intervals as indicators of stimulus intensity. J Neurophysiol 2007; 97:2731-43. [PMID: 17409176 DOI: 10.1152/jn.00987.2006] [Citation(s) in RCA: 66] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Short interspike intervals such as those that occur during burst firing are hypothesized to be distinct features of the neural code. Although a number of correlations between the occurrence of burst events and aspects of the stimulus have been identified, the relationship between burst characteristics and information transfer is uncertain. Pyramidal cells in the electrosensory lobe of the weakly electric fish, Apteronotus leptorhynchus, respond to dynamic broadband electrosensory stimuli with bursts and isolated spikes. In the present study, we mimic synaptic input during sensory stimulation by direct stimulation of electrosensory pyramidal cells with broadband current in vitro. The pyramidal cells respond to this stimulus with burst interspike intervals (ISIs) that are reliably and precisely correlated with the intensity of stimulus upstrokes. We found burst ISIs must differ by a minimum of 2 ms to discriminate, with low error, differences in stimulus intensity. Based on these results, we define and quantify a candidate interval code for the processing of sensory input. Finally, we demonstrate that interval coding is restricted to short ISIs such as those generated in burst events and that the proposed interval code is distinct from rate and timing codes.
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Affiliation(s)
- Anne-Marie M Oswald
- Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Ontario, Canada
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24
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Mehaffey WH, Fernandez FR, Maler L, Turner RW. Regulation of burst dynamics improves differential encoding of stimulus frequency by spike train segregation. J Neurophysiol 2007; 98:939-51. [PMID: 17581845 DOI: 10.1152/jn.00423.2007] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Distinguishing between different signals conveyed in a single sensory modality presents a significant problem for sensory processing. The weakly electric fish Apteronotus leptorhynchus use electrosensory information to encode both low-frequency signals associated with environmental and prey signals and high-frequency communication signals between conspecifics. We identify a mechanism whereby the GABA(B) component of a feedback pathway to the electrosensory lobe is recruited to regulate the intrinsic burst dynamics and coding properties of pyramidal cells for these behaviorally relevant input signals. Through recordings in an in vitro slice preparation and a reduced model of pyramidal cells, we show that recruitment of dendritic GABA(B) currents can shift the timing of a backpropagating spike and its influence on an intrinsic burst mechanism. This regulation of burst firing alters the coding properties of pyramidal cells by improving the correlation of burst and tonic spikes with respect to low- or high-frequency components of complex stimuli. GABA(B) modulation of spike backpropagation thus improves the segregation of burst and tonic spikes evoked by simulated sensory input, allowing pyramidal cells to parcel the spike train into coding streams for the low- and high-frequency components. As the feedback pathway is predicted to be activated in circumstances where environmental and communication stimuli coexist, these data reveal a novel means by which inhibitory input can regulate spike backpropagation to improve signal segregation.
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Affiliation(s)
- W Hamish Mehaffey
- Hotchkiss Brain Institute, University of Calgary, Calgary, Alberta, Canada
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25
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Dimitrov AG. Pings the body electric (and means it too). Focus on "interval coding. I. Burst interspike intervals as indicators of stimulus intensity" and "interval coding. II. Dendrite-dependent mechanisms". J Neurophysiol 2007; 97:2577-8. [PMID: 17251374 DOI: 10.1152/jn.00019.2007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
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