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Chege M, Ferretti P, Webb S, Macharia RW, Obiero G, Kamau J, Alberts SC, Tung J, Akinyi MY, Archie EA. Eukaryotic composition across seasons and social groups in the gut microbiota of wild baboons. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.12.17.628920. [PMID: 39763902 PMCID: PMC11702614 DOI: 10.1101/2024.12.17.628920] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/18/2025]
Abstract
Background Animals coexist with complex microbiota, including bacteria, viruses, and eukaryotes (e.g., fungi, protists, and helminths). While the composition of bacterial and viral components of animal microbiota are increasingly well understood, eukaryotic composition remains neglected. Here we characterized eukaryotic diversity in the microbiomes in wild baboons and tested the degree to which eukaryotic community composition was predicted by host social group membership, sex, age, and season of sample collection. Results We analyzed a total of 75 fecal samples collected between 2012 and 2014 from 73 wild baboons in the Amboseli ecosystem in Kenya. DNA from these samples was subjected to shotgun metagenomic sequencing, revealing members of the kingdoms Protista, Chromista, and Fungi in 90.7%, 46.7%, and 20.3% of samples, respectively. Social group membership explained 11.2% of the global diversity in gut eukaryotic species composition, but we did not detect statistically significant effect of season, host age, and host sex. Across samples, the most prevalent protists were Entamoeba coli (74.66% of samples), Enteromonas hominis (53.33% of samples), and Blastocystis subtype 3 (38.66% of samples), while the most prevalent fungi included Pichia manshurica (14.66% of samples), and Ogataea naganishii (6.66% of samples). Conclusions Protista, Chromista, and Fungi are common members of the gut microbiome of wild baboons. More work on eukaryotic members of primate gut microbiota is essential for primate health monitoring and management strategies.
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Affiliation(s)
- Mary Chege
- One Health Centre, Kenya Institute of Primate Research, Nairobi, Kenya
- Department of Biochemistry, University of Nairobi, Nairobi, Kenya
- Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana, USA
| | - Pamela Ferretti
- Department of Medicine, Genetic Medicine Section, University of Chicago, Chicago, USA
| | - Shasta Webb
- Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana, USA
| | | | - George Obiero
- Department of Biochemistry, University of Nairobi, Nairobi, Kenya
| | - Joseph Kamau
- One Health Centre, Kenya Institute of Primate Research, Nairobi, Kenya
| | - Susan C. Alberts
- Departments of Biology and Evolutionary Anthropology, Duke University, Durham, NC, USA
- Duke University Population Research Institute, Duke University, Durham, NC, USA
| | - Jenny Tung
- Departments of Biology and Evolutionary Anthropology, Duke University, Durham, NC, USA
- Duke University Population Research Institute, Duke University, Durham, NC, USA
- Department of Primate Behavior and Evolution, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany
- Canadian Institute for Advanced Research, Toronto, Ontario, Canada
| | - Mercy Y. Akinyi
- One Health Centre, Kenya Institute of Primate Research, Nairobi, Kenya
| | - Elizabeth A Archie
- Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana, USA
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Banda A, Moyo DZ, Ncube N, Utete E, Machingura J, Gumbo T, Gandiwa E. Gastrointestinal parasite prevalence, diversity and association in free-ranging Chacma baboon troops in a semi-arid savanna ecosystem of Zimbabwe. Int J Parasitol Parasites Wildl 2024; 25:101012. [PMID: 39553413 PMCID: PMC11567109 DOI: 10.1016/j.ijppaw.2024.101012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Revised: 10/21/2024] [Accepted: 10/27/2024] [Indexed: 11/19/2024]
Abstract
Free-ranging Chacma baboon species are known to harbour a wide range of zoonotic parasites, and their frequent close interactions with humans pose a risk of transmission of zoonotic parasites between the two species. This research study focused on understanding parasite dynamics in free-ranging baboon populations that inhabit human-wildlife interface areas, a case of Gwanda State University's Epoch Mine campus in Filabusi at Insiza district. A descriptive and analytical cross-sectional design was used to investigate the prevalence, diversity and association of gastrointestinal parasites among three baboon troops found at the Epoch Mine campus. One hundred and twenty (120) fresh faecal samples were collected from the three troops between February and September 2023. The centrifugal floatation technique was used to process and analyse faecal samples, and parasite ova and cysts were identified using morphological features like shape and size. The prevalence of the parasite taxa and a chi-squared multiple comparison test was computed. Results showed significant differences among most parasite taxa except Coccidia spp and Entamoeba spp among the three troops. The Shannon-Wiener (H') index was used to calculate diversity and graphs were utilized to present the association. The Kruskal-Wallis tests showed no significant difference in parasite diversity among the three troops. Although troop-parasite association showed different parasite species for each troop, helminths Strongylid spp. and Schistosoma spp. were highly common across all three troops. Troop 1 and 3 were associated with four parasite taxa, whereas Troop 2 had only three. The study reveals the presence of gastro-intestinal parasites of public health concern, as they are capable of causing diseases in humans and domestic animals. The study, therefore, underscores the importance of understanding parasite-host dynamics in mitigating zoonotic disease transmission and suggests the need to generate baseline data for mitigating zoonotic diseases and maintaining a healthy ecosystem.
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Affiliation(s)
- Annabel Banda
- Department of Wildlife Conservation and Research, Gwanda State University, Epoch Mine Campus, P.O Box 30, Filabusi, Zimbabwe
| | - Doreen Z. Moyo
- Department of Wildlife Conservation and Research, Gwanda State University, Epoch Mine Campus, P.O Box 30, Filabusi, Zimbabwe
| | - Nokubonga Ncube
- Department of Wildlife Conservation and Research, Gwanda State University, Epoch Mine Campus, P.O Box 30, Filabusi, Zimbabwe
| | - Edmore Utete
- Department of Mathematics and Statistics, Faculty of Computational Sciences, Gwanda State University, P.O Box 30, Filabusi, Zimbabwe
| | - James Machingura
- Department of Biological Science and Ecology, Faculty of Science, University of Zimbabwe, Zimbabwe
- Department of Earth Sciences, University of Western Cape, Bellville, South Africa
| | - Tapiwa Gumbo
- Department of Geography, University of Exeter, Exeter, United Kingdom
| | - Edson Gandiwa
- Scientific Services, Zimbabwe Parks and Wildlife Management Authority, P.O Box CY 140, Causeway, Harare, Zimbabwe
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Tabasshum T, Liza FT, Rabbe MF, Mukutmoni M, Alam MM, Begum A. Occurrence of gastrointestinal (GI) parasites in captive Olive Baboon and Common Langur in Bangladesh. ANIMAL DISEASES 2022. [DOI: 10.1186/s44149-022-00037-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
AbstractNon-human primates (NHPs) serve as necessary reservoir hosts of parasites that create diseases to human. A close interaction between human and NHP can make a pathway for transmission of zoonotic diseases. To prevent zoonotic infection of zoo keepers, park visitors as well as keeping the captive NHPs in healthy state, it is necessary to carry out regular parasitological examination and treatment. A total of 72 fecal samples of Olive Baboon (n = 39) and Common Langur (n = 33) irrespective of their age and sex were collected from two zoological gardens of Bangladesh. Eggs and oocysts of seven gastrointestinal (GI) parasites were observed and identified in samples of both host species. The prevalence of GI parasites recorded was 100%. In case of Olive Baboon, the protozoan prevalence was higher (53.83%) than that of helminths, but opposite scenario was seen in case of Common Langur. Besides, higher intensity of coccidian oocysts in both hosts was recorded in the study.
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