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P SK, Agastinose Ronickom JF. Optimal Electrodermal Activity Segment for Enhanced Emotion Recognition Using Spectrogram-Based Feature Extraction and Machine Learning. Int J Neural Syst 2024; 34:2450027. [PMID: 38511233 DOI: 10.1142/s0129065724500278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/22/2024]
Abstract
In clinical and scientific research on emotion recognition using physiological signals, selecting the appropriate segment is of utmost importance for enhanced results. In our study, we optimized the electrodermal activity (EDA) segment for an emotion recognition system. Initially, we obtained EDA signals from two publicly available datasets: the Continuously annotated signals of emotion (CASE) and Wearable stress and affect detection (WESAD) for 4-class dimensional and three-class categorical emotional classification, respectively. These signals were pre-processed, and decomposed into phasic signals using the 'convex optimization to EDA' method. Further, the phasic signals were segmented into two equal parts, each subsequently segmented into five nonoverlapping windows. Spectrograms were then generated using short-time Fourier transform and Mel-frequency cepstrum for each window, from which we extracted 85 features. We built four machine learning models for the first part, second part, and whole phasic signals to investigate their performance in emotion recognition. In the CASE dataset, we achieved the highest multi-class accuracy of 62.54% using the whole phasic and 61.75% with the second part phasic signals. Conversely, the WESAD dataset demonstrated superior performance in three-class emotions classification, attaining an accuracy of 96.44% for both whole phasic and second part phasic segments. As a result, the second part of EDA is strongly recommended for optimal outcomes.
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Affiliation(s)
- Sriram Kumar P
- School of Biomedical Engineering, Indian Institute of Technology (BHU) Varanasi, Uttar Pradesh 221005, India
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2
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Braun R, Tfirn M, Ford RM. Listening to life: Sonification for enhancing discovery in biological research. Biotechnol Bioeng 2024. [PMID: 38678506 DOI: 10.1002/bit.28729] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Revised: 04/05/2024] [Accepted: 04/16/2024] [Indexed: 05/01/2024]
Abstract
Sonification, or the practice of generating sound from data, is a promising alternative or complement to data visualization for exploring research questions in the life sciences. Expressing or communicating data in the form of sound rather than graphs, tables, or renderings can provide a secondary information source for multitasking or remote monitoring purposes or make data accessible when visualizations cannot be used. While popular in astronomy, neuroscience, and geophysics as a technique for data exploration and communication, its potential in the biological and biotechnological sciences has not been fully explored. In this review, we introduce sonification as a concept, some examples of how sonification has been used to address areas of interest in biology, and the history of the technique. We then highlight a selection of biology-related publications that involve sonifications of DNA datasets and protein datasets, sonifications for data collection and interpretation, and sonifications aimed to improve science communication and accessibility. Through this review, we aim to show how sonification has been used both as a discovery tool and a communication tool and to inspire more life-science researchers to incorporate sonification into their own studies.
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Affiliation(s)
- Rhea Braun
- Department of Chemical Engineering, School of Engineering and Applied Sciences, University of Virginia, Charlottesville, Virginia, USA
| | - Maxwell Tfirn
- Department of Music, Christopher Newport University, Newport News, Virginia, USA
| | - Roseanne M Ford
- Department of Chemical Engineering, School of Engineering and Applied Sciences, University of Virginia, Charlottesville, Virginia, USA
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3
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Yue H, Chen Z, Guo W, Sun L, Dai Y, Wang Y, Ma W, Fan X, Wen W, Lei W. Research and application of deep learning-based sleep staging: Data, modeling, validation, and clinical practice. Sleep Med Rev 2024; 74:101897. [PMID: 38306788 DOI: 10.1016/j.smrv.2024.101897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2023] [Revised: 12/30/2023] [Accepted: 01/04/2024] [Indexed: 02/04/2024]
Abstract
Over the past few decades, researchers have attempted to simplify and accelerate the process of sleep stage classification through various approaches; however, only a few such approaches have gained widespread acceptance. Artificial intelligence technology, particularly deep learning, is promising for earning the trust of the sleep medicine community in automated sleep-staging systems, thus facilitating its application in clinical practice and integration into daily life. We aimed to comprehensively review the latest methods that are applying deep learning for enhancing sleep staging efficiency and accuracy. Starting from the requisite "data" for constructing deep learning algorithms, we elucidated the current landscape of this domain and summarized the fundamental modeling process, encompassing signal selection, data pre-processing, model architecture, classification tasks, and performance metrics. Furthermore, we reviewed the applications of automated sleep staging in scenarios such as sleep-disorder screening, diagnostic procedures, and health monitoring and management. Finally, we conducted an in-depth analysis and discussion of the challenges and future in intelligent sleep staging, particularly focusing on large-scale sleep datasets, interdisciplinary collaborations, and human-computer interactions.
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Affiliation(s)
- Huijun Yue
- Otorhinolaryngology Hospital, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, People's Republic of China
| | - Zhuqi Chen
- Otorhinolaryngology Hospital, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, People's Republic of China
| | - Wenbin Guo
- Otorhinolaryngology Hospital, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, People's Republic of China
| | - Lin Sun
- Otorhinolaryngology Hospital, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, People's Republic of China
| | - Yidan Dai
- School of Computer Science, South China Normal University, Guangzhou, People's Republic of China
| | - Yiming Wang
- Otorhinolaryngology Hospital, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, People's Republic of China
| | - Wenjun Ma
- School of Computer Science, South China Normal University, Guangzhou, People's Republic of China
| | - Xiaomao Fan
- College of Big Data and Internet, Shenzhen Technology University, Shenzhen, People's Republic of China
| | - Weiping Wen
- Otorhinolaryngology Hospital, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, People's Republic of China; Department of Otolaryngology, The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, People's Republic of China.
| | - Wenbin Lei
- Otorhinolaryngology Hospital, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, People's Republic of China.
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Cotronei M, Giuffrè S, Marcianò A, Rosaci D, Sarnè GML. Improving the Effectiveness of Eigentrust in Computing the Reputation of Social Agents in Presence of Collusion. Int J Neural Syst 2024; 34:2350063. [PMID: 37806781 DOI: 10.1142/s0129065723500636] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/10/2023]
Abstract
The introduction of trust-based approaches in social scenarios modeled as multi-agent systems (MAS) has been recognized as a valid solution to improve the effectiveness of these communities. In fact, they make interactions taking place in social scenarios much fruitful as possible, limiting or even avoiding malicious or fraudulent behaviors, including collusion. This is also the case of multi-layered neural networks (NN), which can face limited, incomplete, misleading, controversial or noisy datasets, produced by untrustworthy agents. Many strategies to deal with malicious agents in social networks have been proposed in the literature. One of the most effective is represented by Eigentrust, often adopted as a benchmark. It can be seen as a variation of PageRank, an algorithm for determining result rankings used by search engines like Google. Moreover, Eigentrust can also be viewed as a linear neural network whose architecture is represented by the graph of Web pages. A major drawback of Eigentrust is that it uses some additional information about agents that can be a priori considered particularly trustworthy, rewarding them in terms of reputation, while the non pre-trusted agents are penalized. In this paper, we propose a different strategy to detect malicious agents which does not modify the real reputation values of the honest ones. We introduce a measure of effectiveness when computing reputation in presence of malicious agents. Moreover, we define a metric of error useful to quantitatively determine how much an algorithm for the identification of malicious agents modifies the reputation scores of the honest ones. We have performed an experimental campaign of mathematical simulations on a dynamic multi-agent environment. The obtained results show that our method is more effective than Eigentrust in determining reputation values, presenting an error which is about a thousand times lower than the error produced by Eigentrust on medium-sized social networks.
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Affiliation(s)
- Mariantonia Cotronei
- Department of Information Engineering, Infrastructure and Sustainable Energy (DIIES), University Mediterranea of Reggio Calabria, Feo di Vito, Reggio Calabria 89122, Italy
| | - Sofia Giuffrè
- Department of Information Engineering, Infrastructure and Sustainable Energy (DIIES), University Mediterranea of Reggio Calabria, Feo di Vito, Reggio Calabria 89122, Italy
| | - Attilio Marcianò
- Department of Information Engineering, Infrastructure and Sustainable Energy (DIIES), University Mediterranea of Reggio Calabria, Feo di Vito, Reggio Calabria 89122, Italy
| | - Domenico Rosaci
- Department of Information Engineering, Infrastructure and Sustainable Energy (DIIES), University Mediterranea of Reggio Calabria, Feo di Vito, Reggio Calabria 89122, Italy
| | - Giuseppe M L Sarnè
- Department of Psychology, University of Milan Bicocca, Piazza dell'Ateneo Nuovo, 1 Milano 20126, Italy
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Rafiei MH, Gauthier LV, Adeli H, Takabi D. Self-Supervised Learning for Electroencephalography. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2024; 35:1457-1471. [PMID: 35867362 DOI: 10.1109/tnnls.2022.3190448] [Citation(s) in RCA: 25] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Decades of research have shown machine learning superiority in discovering highly nonlinear patterns embedded in electroencephalography (EEG) records compared with conventional statistical techniques. However, even the most advanced machine learning techniques require relatively large, labeled EEG repositories. EEG data collection and labeling are costly. Moreover, combining available datasets to achieve a large data volume is usually infeasible due to inconsistent experimental paradigms across trials. Self-supervised learning (SSL) solves these challenges because it enables learning from EEG records across trials with variable experimental paradigms, even when the trials explore different phenomena. It aggregates multiple EEG repositories to increase accuracy, reduce bias, and mitigate overfitting in machine learning training. In addition, SSL could be employed in situations where there is limited labeled training data, and manual labeling is costly. This article: 1) provides a brief introduction to SSL; 2) describes some SSL techniques employed in recent studies, including EEG; 3) proposes current and potential SSL techniques for future investigations in EEG studies; 4) discusses the cons and pros of different SSL techniques; and 5) proposes holistic implementation tips and potential future directions for EEG SSL practices.
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Yousif MAA, Ozturk M. Deep Learning-Based Classification of Epileptic Electroencephalography Signals Using a Concentrated Time-Frequency Approach. Int J Neural Syst 2023; 33:2350064. [PMID: 37830300 DOI: 10.1142/s0129065723500648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2023]
Abstract
ConceFT (concentration of frequency and time) is a new time-frequency (TF) analysis method which combines multitaper technique and synchrosqueezing transform (SST). This combination produces highly concentrated TF representations with approximately perfect time and frequency resolutions. In this paper, it is aimed to show the TF representation performance and robustness of ConceFT by using it for the classification of the epileptic electroencephalography (EEG) signals. Therefore, a signal classification algorithm which uses TF images obtained with ConceFT to feed the transfer learning structure has been presented. Epilepsy is a common neurological disorder that millions of people suffer worldwide. Daily lives of the patients are quite difficult because of the unpredictable time of seizures. EEG signals monitoring the electrical activity of the brain can be used to detect approaching seizures and make possible to warn the patient before the attack. GoogLeNet which is a well-known deep learning model has been preferred to classify TF images. Classification performance is directly related to the TF representation accuracy of the ConceFT. The proposed method has been tested for various classification scenarios and obtained accuracies between 95.83% and 99.58% for two and three-class classification scenarios. High results show that ConceFT is a successful and promising TF analysis method for non-stationary biomedical signals.
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Affiliation(s)
- Mosab A A Yousif
- Department of Biomedical Engineering, Institute of Graduate Studies, Istanbul University-Cerrahpasa, Istanbul, Turkey
- Department of Electronics Engineering, University of Gezira, Wad-Madani, Sudan
| | - Mahmut Ozturk
- Department of Electrical and Electronics Engineering, Engineering Faculty, Istanbul University-Cerrahpasa, Istanbul, Turkey
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Qin X, Niu Y, Zhou H, Li X, Jia W, Zheng Y. Driver Drowsiness EEG Detection Based on Tree Federated Learning and Interpretable Network. Int J Neural Syst 2023; 33:2350009. [PMID: 36655401 DOI: 10.1142/s0129065723500090] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Accurate identification of driver's drowsiness state through Electroencephalogram (EEG) signals can effectively reduce traffic accidents, but EEG signals are usually stored in various clients in the form of small samples. This study attempts to construct an efficient and accurate privacy-preserving drowsiness monitoring system, and proposes a fusion model based on tree Federated Learning (FL) and Convolutional Neural Network (CNN), which can not only identify and explain the driver's drowsiness state, but also integrate the information of different clients under the premise of privacy protection. Each client uses CNN with the Global Average Pooling (GAP) layer and shares model parameters. The tree FL transforms communication relationships into a graph structure, and model parameters are transmitted in parallel along connected branches of the graph. Moreover, the Class Activation Mapping (CAM) is used to find distinctive EEG features for representing specific classes. On EEG data of 11 subjects, it is found that this method has higher average accuracy, F1-score and AUC than the traditional classification method, reaching 73.56%, 73.26% and 78.23%, respectively. Compared with the traditional FL algorithm, this method better protects the driver's privacy and improves communication efficiency.
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Affiliation(s)
- Xue Qin
- School of Information Science and Engineering, Shandong Normal University, Jinan, 250358, P. R. China
| | - Yi Niu
- School of Information Science and Engineering, Shandong Normal University, Jinan, 250358, P. R. China
| | - Huiyu Zhou
- School of Computing and Mathematical Sciences, University of Leicester, Leicester, LE1 7RH, UK
| | - Xiaojie Li
- School of Information Science and Engineering, Shandong Normal University, Jinan, 250358, P. R. China
| | - Weikuan Jia
- School of Information Science and Engineering, Shandong Normal University, Jinan, 250358, P. R. China
| | - Yuanjie Zheng
- School of Information Science and Engineering, Shandong Normal University, Jinan, 250358, P. R. China
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8
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Gu B, Adeli H. Toward automated prediction of sudden unexpected death in epilepsy. Rev Neurosci 2022; 33:877-887. [PMID: 35619127 DOI: 10.1515/revneuro-2022-0024] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Accepted: 04/19/2022] [Indexed: 12/14/2022]
Abstract
Sudden unexpected death in epilepsy (SUDEP) is a devastating yet overlooked complication of epilepsy. The rare and complex nature of SUDEP makes it challenging to study. No prediction or prevention of SUDEP is currently available in a clinical setting. In the past decade, significant advances have been made in our knowledge of the pathophysiologic cascades that lead to SUDEP. In particular, studies of brain, heart, and respiratory functions in both human patients at the epilepsy monitoring unit and animal models during fatal seizures provide critical information to integrate computational tools for SUDEP prediction. The rapid advances in automated seizure detection and prediction algorithms provide a fundamental framework for their adaption in predicting SUDEP. If a SUDEP can be predicted, then there will be a potential for medical intervention to be administered, either by their caregivers or via an implanted device automatically delivering electrical stimulation or medication, and finally save lives from fatal seizures. This article presents recent developments of SUDEP studies focusing on the pathophysiologic basis of SUDEP and computational implications of machine learning techniques that can be adapted and extended for SUDEP prediction. This article also discusses some novel ideas for SUDEP prediction and rescue including principal component analysis and closed-loop intervention.
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Affiliation(s)
- Bin Gu
- Department of Neuroscience, Ohio State University, Columbus, OH 43210, USA
| | - Hojjat Adeli
- Department of Neuroscience, Ohio State University, Columbus, OH 43210, USA.,Department of Biomedical Informatics, Ohio State University, Columbus, OH 43210, USA
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9
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Modeling the efficacy of different anti-angiogenic drugs on treatment of solid tumors using 3D computational modeling and machine learning. Comput Biol Med 2022; 146:105511. [DOI: 10.1016/j.compbiomed.2022.105511] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Revised: 04/06/2022] [Accepted: 04/07/2022] [Indexed: 12/11/2022]
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Sanchez-Reolid R, Martinez-Saez MC, Garcia-Martinez B, Fernandez-Aguilar L, Segura LR, Latorre JM, Fernandez-Caballero A. Emotion Classification from EEG with a Low-Cost BCI Versus a High-End Equipment. Int J Neural Syst 2022; 32:2250041. [DOI: 10.1142/s0129065722500411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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11
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Maya-Piedrahita MC, Herrera-Gomez PM, Berrío-Mesa L, Cárdenas-Peña DA, Orozco-Gutierrez AA. Supported Diagnosis of Attention Deficit and Hyperactivity Disorder from EEG Based on Interpretable Kernels for Hidden Markov Models. Int J Neural Syst 2022; 32:2250008. [PMID: 34996341 DOI: 10.1142/s0129065722500083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
As a neurodevelopmental pathology, Attention Deficit Hyperactivity Disorder (ADHD) mainly arises during childhood. Persistent patterns of generalized inattention, impulsivity, or hyperactivity characterize ADHD that may persist into adulthood. The conventional diagnosis relies on clinical observational processes yielding high rates of overdiagnosis due to varying interpretations among specialists or missing information. Although several studies have designed objective behavioral features to overcome such an issue, they lack significance. Despite electroencephalography (EEG) analyses extracting alternative biomarkers using signal processing techniques, the nonlinearity and nonstationarity of EEG signals restrain performance and generalization of hand-crafted features. This work proposes a methodology to support ADHD diagnosis by characterizing EEG signals from hidden Markov models (HMM), classifying subjects based on similarity measures for probability functions, and spatially interpreting the results using graphic embeddings of stochastic dynamic models. The methodology learns a single HMM for EEG signal from each patient, so favoring the inter-subject variability. Then, the Probability Product Kernel, specifically developed for assessing the similarity between HMMs, fed a support vector machine that classifies subjects according to their stochastic dynamics. Lastly, the kernel variant of Principal Component Analysis provided a means to visualize the EEG transitions in a two-dimensional space, evidencing dynamic differences between ADHD and Healthy Control children. From the electrophysiological perspective, we recorded EEG under the Stop Signal Task modified with reward levels, which considers cognitive features of interest as insufficient motivational circuits recruitment. The methodology compares the supported diagnosis in two EEG channel setups (whole channel set and channels of interest in frontocentral area) and four frequency bands (Theta, Alpha, Beta rhythms, and a wideband). Results evidence an accuracy rate of 97.0% in the Beta band and in the channels where previous works found error-related negativity events. Such accuracy rate strongly supports the dual pathway hypothesis and motivational deficit concerning the pathophysiology of ADHD. It also demonstrates the utility of joining inhibitory and motivational paradigms with dynamic EEG analysis into a noninvasive and affordable diagnostic tool for ADHD patients.
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Affiliation(s)
- M C Maya-Piedrahita
- Automatics Research Group, Universidad Tecnológica de Pereira, Pereira, Risaralda, Colombia
| | - P M Herrera-Gomez
- Research Group Psiquiatría Neurociencias y Comunidad, Universidad Tecnológica de Pereira, Pereira, Risaralda, Colombia
| | - L Berrío-Mesa
- Automatics Research Group, Universidad Tecnológica de Pereira, Pereira, Risaralda, Colombia
| | - D A Cárdenas-Peña
- Automatics Research Group, Universidad Tecnológica de Pereira, Pereira, Risaralda, Colombia
| | - A A Orozco-Gutierrez
- Automatics Research Group, Universidad Tecnológica de Pereira, Pereira, Risaralda, Colombia
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Mohammadi E, Makkiabadi B, Shamsollahi MB, Reisi P, Kermani S. Wavelet-Based Biphase Analysis of Brain Rhythms in Automated Wake-Sleep Classification. Int J Neural Syst 2021; 32:2250004. [PMID: 34967704 DOI: 10.1142/s0129065722500046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Many studies in the field of sleep have focused on connectivity and coherence. Still, the nonstationary nature of electroencephalography (EEG) makes many of the previous methods unsuitable for automatic sleep detection. Time-frequency representations and high-order spectra are applied to nonstationary signal analysis and nonlinearity investigation, respectively. Therefore, combining wavelet and bispectrum, wavelet-based bi-phase (Wbiph) was proposed and used as a novel feature for sleep-wake classification. The results of the statistical analysis with emphasis on the importance of the gamma rhythm in sleep detection show that the Wbiph is more potent than coherence in the wake-sleep classification. The Wbiph has not been used in sleep studies before. However, the results and inherent advantages, such as the use of wavelet and bispectrum in its definition, suggest it as an excellent alternative to coherence. In the next part of this paper, a convolutional neural network (CNN) classifier was applied for the sleep-wake classification by Wbiph. The classification accuracy was 97.17% in nonLOSO and 95.48% in LOSO cross-validation, which is the best among previous studies on sleep-wake classification.
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Affiliation(s)
- Ehsan Mohammadi
- Department of Bioelectrics and Biomedical Engineering, School of Advanced Technologies in Medicine, Isfahan, University of Medical Sciences, Isfahan, Iran
| | - Bahador Makkiabadi
- Department of Medical Physics and Biomedical Engineering, School of Medicine, Tehran University of Medical, Sciences, Tehran, Iran
| | - Mohammad Bagher Shamsollahi
- Biomedical Signal and Image Processing Laboratory, Department of Electrical Engineering, Sharif University of Technology, Tehran, Iran
| | - Parham Reisi
- Department of Physiology, School of Medicine, Isfahan University of Medical Sciences, Isfahan, Iran
| | - Saeed Kermani
- Department of Bioelectrics and Biomedical Engineering, School of Advanced Technologies in Medicine, Isfahan, University of Medical Sciences, Isfahan, Iran
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