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Seguin C, Sporns O, Zalesky A. Brain network communication: concepts, models and applications. Nat Rev Neurosci 2023; 24:557-574. [PMID: 37438433 DOI: 10.1038/s41583-023-00718-5] [Citation(s) in RCA: 73] [Impact Index Per Article: 36.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/08/2023] [Indexed: 07/14/2023]
Abstract
Understanding communication and information processing in nervous systems is a central goal of neuroscience. Over the past two decades, advances in connectomics and network neuroscience have opened new avenues for investigating polysynaptic communication in complex brain networks. Recent work has brought into question the mainstay assumption that connectome signalling occurs exclusively via shortest paths, resulting in a sprawling constellation of alternative network communication models. This Review surveys the latest developments in models of brain network communication. We begin by drawing a conceptual link between the mathematics of graph theory and biological aspects of neural signalling such as transmission delays and metabolic cost. We organize key network communication models and measures into a taxonomy, aimed at helping researchers navigate the growing number of concepts and methods in the literature. The taxonomy highlights the pros, cons and interpretations of different conceptualizations of connectome signalling. We showcase the utility of network communication models as a flexible, interpretable and tractable framework to study brain function by reviewing prominent applications in basic, cognitive and clinical neurosciences. Finally, we provide recommendations to guide the future development, application and validation of network communication models.
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Affiliation(s)
- Caio Seguin
- Melbourne Neuropsychiatry Centre, University of Melbourne and Melbourne Health, Melbourne, Victoria, Australia.
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, USA.
| | - Olaf Sporns
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, USA
- Program in Neuroscience, Indiana University, Bloomington, IN, USA
- Program in Cognitive Science, Indiana University, Bloomington, IN, USA
- Indiana University Network Science Institute, Indiana University, Bloomington, IN, USA
| | - Andrew Zalesky
- Melbourne Neuropsychiatry Centre, University of Melbourne and Melbourne Health, Melbourne, Victoria, Australia
- Department of Biomedical Engineering, Melbourne School of Engineering, University of Melbourne, Melbourne, Victoria, Australia
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Seguin C, Jedynak M, David O, Mansour S, Sporns O, Zalesky A. Communication dynamics in the human connectome shape the cortex-wide propagation of direct electrical stimulation. Neuron 2023; 111:1391-1401.e5. [PMID: 36889313 DOI: 10.1016/j.neuron.2023.01.027] [Citation(s) in RCA: 23] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Revised: 11/28/2022] [Accepted: 01/30/2023] [Indexed: 03/09/2023]
Abstract
Communication between gray matter regions underpins all facets of brain function. We study inter-areal communication in the human brain using intracranial EEG recordings, acquired following 29,055 single-pulse direct electrical stimulations in a total of 550 individuals across 20 medical centers (average of 87 ± 37 electrode contacts per subject). We found that network communication models-computed on structural connectivity inferred from diffusion MRI-can explain the causal propagation of focal stimuli, measured at millisecond timescales. Building on this finding, we show that a parsimonious statistical model comprising structural, functional, and spatial factors can accurately and robustly predict cortex-wide effects of brain stimulation (R2=46% in data from held-out medical centers). Our work contributes toward the biological validation of concepts in network neuroscience and provides insight into how connectome topology shapes polysynaptic inter-areal signaling. We anticipate that our findings will have implications for research on neural communication and the design of brain stimulation paradigms.
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Affiliation(s)
- Caio Seguin
- Melbourne Neuropsychiatry Centre, The University of Melbourne and Melbourne Health, Melbourne, VIC, Australia; Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, USA.
| | - Maciej Jedynak
- Aix-Marseille Université, Institut National de la Santé et de la Recherche Médicale, Institut de Neurosciences des Systèmes (INS) UMR1106, Marseille 13005, France
| | - Olivier David
- Aix-Marseille Université, Institut National de la Santé et de la Recherche Médicale, Institut de Neurosciences des Systèmes (INS) UMR1106, Marseille 13005, France
| | - Sina Mansour
- Melbourne Neuropsychiatry Centre, The University of Melbourne and Melbourne Health, Melbourne, VIC, Australia; Department of Biomedical Engineering, Melbourne School of Engineering, The University of Melbourne, Melbourne, VIC, Australia
| | - Olaf Sporns
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, USA; Cognitive Science Program, Indiana University, Bloomington, IN, USA; Program in Neuroscience, Indiana University, Bloomington, IN, USA; Network Science Institute, Indiana University, Bloomington, IN, USA
| | - Andrew Zalesky
- Melbourne Neuropsychiatry Centre, The University of Melbourne and Melbourne Health, Melbourne, VIC, Australia; Department of Biomedical Engineering, Melbourne School of Engineering, The University of Melbourne, Melbourne, VIC, Australia
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Reaction-diffusion models in weighted and directed connectomes. PLoS Comput Biol 2022; 18:e1010507. [DOI: 10.1371/journal.pcbi.1010507] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Revised: 11/23/2022] [Accepted: 08/22/2022] [Indexed: 11/07/2022] Open
Abstract
Connectomes represent comprehensive descriptions of neural connections in a nervous system to better understand and model central brain function and peripheral processing of afferent and efferent neural signals. Connectomes can be considered as a distinctive and necessary structural component alongside glial, vascular, neurochemical, and metabolic networks of the nervous systems of higher organisms that are required for the control of body functions and interaction with the environment. They are carriers of functional epiphenomena such as planning behavior and cognition, which are based on the processing of highly dynamic neural signaling patterns. In this study, we examine more detailed connectomes with edge weighting and orientation properties, in which reciprocal neuronal connections are also considered. Diffusion processes are a further necessary condition for generating dynamic bioelectric patterns in connectomes. Based on our high-precision connectome data, we investigate different diffusion-reaction models to study the propagation of dynamic concentration patterns in control and lesioned connectomes. Therefore, differential equations for modeling diffusion were combined with well-known reaction terms to allow the use of connection weights, connectivity orientation and spatial distances.
Three reaction-diffusion systems Gray-Scott, Gierer-Meinhardt and Mimura-Murray were investigated. For this purpose, implicit solvers were implemented in a numerically stable reaction-diffusion system within the framework of neuroVIISAS. The implemented reaction-diffusion systems were applied to a subconnectome which shapes the mechanosensitive pathway that is strongly affected in the multiple sclerosis demyelination disease. It was found that demyelination modeling by connectivity weight modulation changes the oscillations of the target region, i.e. the primary somatosensory cortex, of the mechanosensitive pathway.
In conclusion, a new application of reaction-diffusion systems to weighted and directed connectomes has been realized. Because the implementation were performed in the neuroVIISAS framework many possibilities for the study of dynamic reaction-diffusion processes in empirical connectomes as well as specific randomized network models are available now.
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Lenschow C, Mendes ARP, Lima SQ. Hearing, touching, and multisensory integration during mate choice. Front Neural Circuits 2022; 16:943888. [PMID: 36247731 PMCID: PMC9559228 DOI: 10.3389/fncir.2022.943888] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2022] [Accepted: 06/28/2022] [Indexed: 12/27/2022] Open
Abstract
Mate choice is a potent generator of diversity and a fundamental pillar for sexual selection and evolution. Mate choice is a multistage affair, where complex sensory information and elaborate actions are used to identify, scrutinize, and evaluate potential mating partners. While widely accepted that communication during mate assessment relies on multimodal cues, most studies investigating the mechanisms controlling this fundamental behavior have restricted their focus to the dominant sensory modality used by the species under examination, such as vision in humans and smell in rodents. However, despite their undeniable importance for the initial recognition, attraction, and approach towards a potential mate, other modalities gain relevance as the interaction progresses, amongst which are touch and audition. In this review, we will: (1) focus on recent findings of how touch and audition can contribute to the evaluation and choice of mating partners, and (2) outline our current knowledge regarding the neuronal circuits processing touch and audition (amongst others) in the context of mate choice and ask (3) how these neural circuits are connected to areas that have been studied in the light of multisensory integration.
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Affiliation(s)
- Constanze Lenschow
- Champalimaud Foundation, Champalimaud Research, Neuroscience Program, Lisbon, Portugal
| | - Ana Rita P Mendes
- Champalimaud Foundation, Champalimaud Research, Neuroscience Program, Lisbon, Portugal
| | - Susana Q Lima
- Champalimaud Foundation, Champalimaud Research, Neuroscience Program, Lisbon, Portugal
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Tian Y, Li G, Sun P. Information evolution in complex networks. CHAOS (WOODBURY, N.Y.) 2022; 32:073105. [PMID: 35907740 DOI: 10.1063/5.0096009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Accepted: 06/14/2022] [Indexed: 06/15/2023]
Abstract
Many biological phenomena or social events critically depend on how information evolves in complex networks. However, a general theory to characterize information evolution is yet absent. Consequently, numerous unknowns remain about the mechanisms underlying information evolution. Among these unknowns, a fundamental problem, being a seeming paradox, lies in the coexistence of local randomness, manifested as the stochastic distortion of information content during individual-individual diffusion, and global regularity, illustrated by specific non-random patterns of information content on the network scale. Here, we attempt to formalize information evolution and explain the coexistence of randomness and regularity in complex networks. Applying network dynamics and information theory, we discover that a certain amount of information, determined by the selectivity of networks to the input information, frequently survives from random distortion. Other information will inevitably experience distortion or dissipation, whose speeds are shaped by the diversity of information selectivity in networks. The discovered laws exist irrespective of noise, but noise accounts for disturbing them. We further demonstrate the ubiquity of our discovered laws by analyzing the emergence of neural tuning properties in the primary visual and medial temporal cortices of animal brains and the emergence of extreme opinions in social networks.
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Affiliation(s)
- Yang Tian
- Department of Psychology, Tsinghua Laboratory of Brain and Intelligence, Tsinghua University, Beijing 100084, China
| | - Guoqi Li
- Institute of Automation, Chinese Academy of Science, Beijing 100190, China
| | - Pei Sun
- Department of Psychology, Tsinghua Laboratory of Brain and Intelligence, Tsinghua University, Beijing 100084, China
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Oude Lohuis MN, Marchesi P, Pennartz CMA, Olcese U. Functional (ir)Relevance of Posterior Parietal Cortex during Audiovisual Change Detection. J Neurosci 2022; 42:5229-5245. [PMID: 35641187 PMCID: PMC9236290 DOI: 10.1523/jneurosci.2150-21.2022] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Revised: 03/24/2022] [Accepted: 03/25/2022] [Indexed: 12/31/2022] Open
Abstract
The posterior parietal cortex (PPC) plays a key role in integrating sensory inputs from different modalities to support adaptive behavior. Neuronal activity in PPC reflects perceptual decision-making across behavioral tasks, but the mechanistic involvement of PPC is unclear. In an audiovisual change detection task, we tested the hypothesis that PPC is required to arbitrate between the noisy inputs from the two different modalities and help decide in which modality a sensory change occurred. In trained male mice, we found extensive single-neuron and population-level encoding of task-relevant visual and auditory stimuli, trial history, as well as upcoming behavioral responses. However, despite these rich neural correlates, which would theoretically be sufficient to solve the task, optogenetic inactivation of PPC did not affect visual or auditory performance. Thus, despite neural correlates faithfully tracking sensory variables and predicting behavioral responses, PPC was not relevant for audiovisual change detection. This functional dissociation questions the role of sensory- and task-related activity in parietal associative circuits during audiovisual change detection. Furthermore, our results highlight the necessity to dissociate functional correlates from mechanistic involvement when exploring the neural basis of perception and behavior.SIGNIFICANCE STATEMENT The posterior parietal cortex (PPC) is active during many daily tasks, but capturing its function has remained challenging. Specifically, it is proposed to function as an integration hub for multisensory inputs. Here, we tested the hypothesis that, rather than classical cue integration, mouse PPC is involved in the segregation and discrimination of sensory modalities. Surprisingly, although neural activity tracked current and past sensory stimuli and reflected the ongoing decision-making process, optogenetic inactivation did not affect task performance. Thus, we show an apparent redundancy of sensory and task-related activity in mouse PPC. These results narrow down the function of parietal circuits, as well as direct the search for those neural dynamics that causally drive perceptual decision-making.
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Affiliation(s)
- Matthijs N Oude Lohuis
- Cognitive and Systems Neuroscience Group, SILS, University of Amsterdam, Amsterdam 1098XH, The Netherlands
- Research Priority Area Brain and Cognition, University of Amsterdam, Amsterdam 1018WS, The Netherlands
| | - Pietro Marchesi
- Cognitive and Systems Neuroscience Group, SILS, University of Amsterdam, Amsterdam 1098XH, The Netherlands
- Research Priority Area Brain and Cognition, University of Amsterdam, Amsterdam 1018WS, The Netherlands
| | - Cyriel M A Pennartz
- Cognitive and Systems Neuroscience Group, SILS, University of Amsterdam, Amsterdam 1098XH, The Netherlands
- Research Priority Area Brain and Cognition, University of Amsterdam, Amsterdam 1018WS, The Netherlands
| | - Umberto Olcese
- Cognitive and Systems Neuroscience Group, SILS, University of Amsterdam, Amsterdam 1098XH, The Netherlands
- Research Priority Area Brain and Cognition, University of Amsterdam, Amsterdam 1018WS, The Netherlands
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Differential distribution of inhibitory neuron types in subregions of claustrum and dorsal endopiriform nucleus of the short-tailed fruit bat. Brain Struct Funct 2022; 227:1615-1640. [PMID: 35188589 DOI: 10.1007/s00429-022-02459-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Accepted: 01/17/2022] [Indexed: 12/22/2022]
Abstract
Few brain regions have such wide-ranging inputs and outputs as the claustrum does, and fewer have posed equivalent challenges in defining their structural boundaries. We studied the distributions of three calcium-binding proteins-calretinin, parvalbumin, and calbindin-in the claustrum and dorsal endopiriform nucleus of the fruit bat, Carollia perspicillata. The proportionately large sizes of claustrum and dorsal endopiriform nucleus in Carollia brain afford unique access to these structures' intrinsic anatomy. Latexin immunoreactivity permits a separation of claustrum into core and shell subregions and an equivalent separation of dorsal endopiriform nucleus. Using latexin labeling, we found that the claustral shell in Carollia brain can be further subdivided into at least four distinct subregions. Calretinin and parvalbumin immunoreactivity reinforced the boundaries of the claustral core and its shell subregions with diametrically opposite distribution patterns. Calretinin, parvalbumin, and calbindin all colocalized with GAD67, indicating that these proteins label inhibitory neurons in both claustrum and dorsal endopiriform nucleus. Calretinin, however, also colocalized with latexin in a subset of neurons. Confocal microscopy revealed appositions that suggest synaptic contacts between cells labeled for each of the three calcium-binding proteins and latexin-immunoreactive somata in claustrum and dorsal endopiriform nucleus. Our results indicate significant subregional differences in the intrinsic inhibitory connectivity within and between claustrum and dorsal endopiriform nucleus. We conclude that the claustrum is structurally more complex than previously appreciated and that claustral and dorsal endopiriform nucleus subregions are differentially modulated by multiple inhibitory systems. These findings can also account for the excitability differences between claustrum and dorsal endopiriform nucleus described previously.
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Yao Q, Chandrasekaran M, Dovrolis C. Root-Cause Analysis of Activation Cascade Differences in Brain Networks. Brain Inform 2022. [DOI: 10.1007/978-3-031-15037-1_8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022] Open
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9
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Hückesfeld S, Schlegel P, Miroschnikow A, Schoofs A, Zinke I, Haubrich AN, Schneider-Mizell CM, Truman JW, Fetter RD, Cardona A, Pankratz MJ. Unveiling the sensory and interneuronal pathways of the neuroendocrine connectome in Drosophila. eLife 2021; 10:e65745. [PMID: 34085637 PMCID: PMC8177888 DOI: 10.7554/elife.65745] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Accepted: 05/19/2021] [Indexed: 12/27/2022] Open
Abstract
Neuroendocrine systems in animals maintain organismal homeostasis and regulate stress response. Although a great deal of work has been done on the neuropeptides and hormones that are released and act on target organs in the periphery, the synaptic inputs onto these neuroendocrine outputs in the brain are less well understood. Here, we use the transmission electron microscopy reconstruction of a whole central nervous system in the Drosophila larva to elucidate the sensory pathways and the interneurons that provide synaptic input to the neurosecretory cells projecting to the endocrine organs. Predicted by network modeling, we also identify a new carbon dioxide-responsive network that acts on a specific set of neurosecretory cells and that includes those expressing corazonin (Crz) and diuretic hormone 44 (Dh44) neuropeptides. Our analysis reveals a neuronal network architecture for combinatorial action based on sensory and interneuronal pathways that converge onto distinct combinations of neuroendocrine outputs.
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Affiliation(s)
- Sebastian Hückesfeld
- Department of Molecular Brain Physiology and Behavior, LIMES Institute, University of BonnBonnGermany
| | - Philipp Schlegel
- Department of Zoology, University of CambridgeCambridgeUnited Kingdom
| | - Anton Miroschnikow
- Department of Molecular Brain Physiology and Behavior, LIMES Institute, University of BonnBonnGermany
| | - Andreas Schoofs
- Department of Molecular Brain Physiology and Behavior, LIMES Institute, University of BonnBonnGermany
| | - Ingo Zinke
- Department of Molecular Brain Physiology and Behavior, LIMES Institute, University of BonnBonnGermany
| | - André N Haubrich
- Life & Brain, Institute for Experimental Epileptology and Cognition Research, University of Bonn Medical Center GermanyBonnGermany
| | | | - James W Truman
- Janelia Research Campus, Howard Hughes Medical InstituteAshburnUnited States
| | - Richard D Fetter
- Janelia Research Campus, Howard Hughes Medical InstituteAshburnUnited States
| | - Albert Cardona
- Janelia Research Campus, Howard Hughes Medical InstituteAshburnUnited States
- MRC Laboratory of Molecular Biology, Cambridge Biomedical Campus, Francis Crick AvenueCambridgeUnited Kingdom
- Department of Physiology, Development and NeuroscienceCambridgeUnited Kingdom
| | - Michael J Pankratz
- Department of Molecular Brain Physiology and Behavior, LIMES Institute, University of BonnBonnGermany
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Abstract
Communication models describe the flow of signals among nodes of a network. In neural systems, communication models are increasingly applied to investigate network dynamics across the whole brain, with the ultimate aim to understand how signal flow gives rise to brain function. Communication models range from diffusion-like processes to those related to infectious disease transmission and those inspired by engineered communication systems like the internet. This Focus Feature brings together novel investigations of a diverse range of mechanisms and strategies that could shape communication in mammal whole-brain networks.
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Affiliation(s)
- Daniel Graham
- Department of Psychology, Hobart and William Smith Colleges, Geneva, NY, USA
| | | | - Bratislav Mišić
- McConnell Brain Imaging Centre, Montréal Neurological Institute, McGill University, Montréal, Quebec, Canada
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