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Schell T, Feldmeyer B, Schmidt H, Greshake B, Tills O, Truebano M, Rundle SD, Paule J, Ebersberger I, Pfenninger M. An annotated draft genome for Radix auricularia (Gastropoda, Mollusca). Genome Biol Evol 2017; 9:2997437. [PMID: 28204581 PMCID: PMC5381561 DOI: 10.1093/gbe/evx032] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2016] [Revised: 01/31/2017] [Accepted: 02/08/2017] [Indexed: 02/07/2023] Open
Abstract
Molluscs are the second most species-rich phylum in the animal kingdom, yet only 11 genomes of this group have been published so far. Here, we present the draft genome sequence of the pulmonate freshwater snail Radix auricularia . Six whole genome shotgun libraries with different layouts were sequenced. The resulting assembly comprises 4,823 scaffolds with a cumulative length of 910 Mb and an overall read coverage of 72×. The assembly contains 94.6% of a metazoan core gene collection, indicating an almost complete coverage of the coding fraction. The discrepancy of ∼690 Mb compared with the estimated genome size of R. auricularia (1.6 Gb) results from a high repeat content of 70% mainly comprising DNA transposons. The annotation of 17,338 protein coding genes was supported by the use of publicly available transcriptome data. This draft will serve as starting point for further genomic and population genetic research in this scientifically important phylum.
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Affiliation(s)
- Tilman Schell
- Molecular Ecology Group, Institute for Ecology, Evolution and Diversity, Goethe-University, Frankfurt am Main, Germany
- Adaptation and Climate, Senckenberg Biodiversity and Climate Research Centre, Frankfurt am Main, Germany
| | - Barbara Feldmeyer
- Adaptation and Climate, Senckenberg Biodiversity and Climate Research Centre, Frankfurt am Main, Germany
| | - Hanno Schmidt
- Adaptation and Climate, Senckenberg Biodiversity and Climate Research Centre, Frankfurt am Main, Germany
| | - Bastian Greshake
- Department for Applied Bioinformatics, Institute for Cell Biology and Neuroscience Goethe-University, Frankfurt am Main, Germany
| | - Oliver Tills
- Marine Biology and Ecology Research Centre, Marine Institute, School of Marine Science and Engineering, Plymouth University, United Kingdom
| | - Manuela Truebano
- Marine Biology and Ecology Research Centre, Marine Institute, School of Marine Science and Engineering, Plymouth University, United Kingdom
| | - Simon D. Rundle
- Marine Biology and Ecology Research Centre, Marine Institute, School of Marine Science and Engineering, Plymouth University, United Kingdom
| | - Juraj Paule
- Department of Botany and Molecular Evolution, Senckenberg Research Institute, Frankfurt am Main, Germany
| | - Ingo Ebersberger
- Adaptation and Climate, Senckenberg Biodiversity and Climate Research Centre, Frankfurt am Main, Germany
- Department for Applied Bioinformatics, Institute for Cell Biology and Neuroscience Goethe-University, Frankfurt am Main, Germany
| | - Markus Pfenninger
- Molecular Ecology Group, Institute for Ecology, Evolution and Diversity, Goethe-University, Frankfurt am Main, Germany
- Adaptation and Climate, Senckenberg Biodiversity and Climate Research Centre, Frankfurt am Main, Germany
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