1
|
Woodcock MR, Powers K, Snead K, Pellettieri J. Flatworm Transcriptomes Reveal Widespread Parasitism by Histophagous Ciliates. Genome Biol Evol 2024; 16:evae007. [PMID: 38242711 PMCID: PMC10837001 DOI: 10.1093/gbe/evae007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Revised: 01/05/2024] [Accepted: 01/11/2024] [Indexed: 01/21/2024] Open
Abstract
Unicellular ciliates like Tetrahymena are best known as free-living bacteriovores, but many species are facultative or obligate parasites. These "histophages" feed on the tissues of hosts ranging from planarian flatworms to commercially important fish and the larvae of imperiled freshwater mussels. Here, we developed a novel bioinformatics pipeline incorporating the nonstandard ciliate genetic code and used it to search for Ciliophora sequences in 34 publicly available Platyhelminthes EST libraries. From 2,615,036 screened ESTs, we identified nearly 6,000 high-confidence ciliate transcripts, supporting parasitism of seven additional flatworm species. We also cultured and identified Tetrahymena from nine terrestrial and freshwater planarians, including invasive earthworm predators from the genus Bipalium and the widely studied regeneration models Dugesia japonica and Schmidtea mediterranea. A co-phylogenetic reconstruction provides strong evidence for the coevolution of histophagous Ciliophora with their Platyhelminthes hosts. We further report the antiprotozoal aminoglycoside paromomycin expels Tetrahymena from S. mediterranea, providing new opportunities to investigate the effects of this relationship on planarian biology. Together, our findings raise the possibility that invasive flatworms constitute a novel dispersal mechanism for Tetrahymena parasites and position the Platyhelminthes as an ideal model phylum for studying the ecology and evolution of histophagous ciliates.
Collapse
Affiliation(s)
- M Ryan Woodcock
- Department of Biology, Keene State College, Keene, NH, USA
- Department of Science, Mathematics and Technology, Medaille University, Buffalo, NY, USA
- Department of Natural Science, Trocaire College, Buffalo, NY, USA
| | - Kaleigh Powers
- Department of Biology, Keene State College, Keene, NH, USA
| | - Kirsten Snead
- Department of Science, Mathematics and Technology, Medaille University, Buffalo, NY, USA
- Ira A. Fulton Schools of Engineering, Arizona State University, Tempe, AZ, USA
| | | |
Collapse
|
2
|
Woodcock MR, Powers K, Snead K, Pellettieri J. FLATWORM TRANSCRIPTOMES REVEAL WIDESPREAD PARASITISM BY HISTOPHAGOUS CILIATES. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.09.17.558123. [PMID: 37745455 PMCID: PMC10516030 DOI: 10.1101/2023.09.17.558123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/26/2023]
Abstract
Unicellular ciliates like Tetrahymena are best known as free-living bacteriovores, but many species are facultative or obligate parasites. These 'histophages' feed on the tissues of hosts ranging from planarian flatworms to commercially important fish and the larvae of imperiled freshwater mussels. Here, we developed a novel bioinformatics pipeline incorporating the nonstandard ciliate genetic code and used it to search for Ciliophora sequences in 34 publicly available Platyhelminthes EST libraries. From 2,615,036 screened ESTs, we identified nearly 6,000 high-confidence ciliate transcripts, supporting parasitism of seven additional flatworm species. We also cultured and identified Tetrahymena from nine terrestrial and freshwater planarians, including invasive earthworm predators from the genus Bipalium and the widely studied regeneration models Dugesia japonica and Schmidtea mediterranea. A cophylogenetic reconstruction provides strong evidence for coevolution of histophagous Ciliophora with their Platyhelminthes hosts. We further report the antiprotozoal aminoglycoside paromomycin expels Tetrahymena from S. mediterranea, providing new opportunities to investigate the effects of this relationship on planarian biology. Together, our findings raise the possibility that invasive flatworms constitute a novel dispersal mechanism for Tetrahymena parasites and position the Platyhelminthes as an ideal model phylum for studying the ecology and evolution of histophagous ciliates.
Collapse
Affiliation(s)
- M. Ryan Woodcock
- Department of Biology, Keene State College, Keene, NH, USA
- Department of Science, Mathematics & Technology, Medaille University, Buffalo, NY, USA
- Department of Natural Science, Trocaire College, Buffalo, NY, USA
| | - Kaleigh Powers
- Department of Biology, Keene State College, Keene, NH, USA
| | - Kirsten Snead
- Department of Science, Mathematics & Technology, Medaille University, Buffalo, NY, USA
- Ira A. Fulton Schools of Engineering, Arizona State University, Tempe, AZ, USA
| | | |
Collapse
|
3
|
Luna MDE, Boll PK. An annotated checklist of terrestrial flatworms (Platyhelminthes: Tricladida: Geoplanidae) from Mexico, with new records of invasive species from a citizen science platform and a new nomen dubium. Zootaxa 2023; 5297:518-532. [PMID: 37518781 DOI: 10.11646/zootaxa.5297.4.3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Indexed: 08/01/2023]
Abstract
A checklist of species of terrestrial flatworms (Platyhelminthes: Tricladida: Geoplanidae) recorded for Mexico is compiled, listing 11 species. Five are directly referenced in the literature: Bipalium kewense Moseley, 1878, Bipalium vagum Jones & Sterrer, 2005, Diporodemus yucatani Hyman, 1938, Geoplana multipunctata Fuhrmann, 1914, and Pseudogeoplana nigrofusca (Darwin, 1844); and one species had been indirectly mentioned for the country: Parakontikia ventrolineata (Dendy, 1892), which was described from material intercepted in the USA in a shipment of ornamental plants from Mexico. Mexican records from the citizen science platform iNaturalist were reviewed, revealing the presence of five widely distributed invasive species: Caenoplana coerulea Moseley, 1877, recorded in Ciudad de Mexico; Endeavouria septemlineata (Hyman, 1939), recorded in Ciudad de Mexico, Estado de Mexico, Hidalgo, Jalisco, Morelos, and Oaxaca; Dolichoplana carvalhoi Corrêa, 1947, recorded in Jalisco; Dolichoplana striata Moseley, 1877, recorded in Morelos, Nuevo Leon, Quintana Roo, Tamaulipas, and Veracruz; and Rhynchodemus sylvaticus (Leidy, 1851), recorded in Jalisco. The presence of Parakontikia ventrolineata is confirmed for the country, being recorded in Ciudad de Mexico, Estado de Mexico, Hidalgo, Jalisco, Michoacan, Puebla, Queretaro, and Veracruz. The original description of Pseudogeoplana nigrofusca was revisited and compared to subsequent descriptions and keys, noting that the specimens are not conspecific and that the original description is too vague to accurately identify the species, therefore, this taxon is hereby relegated as a nomen dubium. A key for the higher taxa (subfamilies and tribes) of the North American terrestrial flatworms is proposed.
Collapse
Affiliation(s)
- Manuel DE Luna
- Universidad Autonoma de Nuevo Leon; Ciudad Universitaria; P.C. 66451; San Nicolas de los Garza; Nuevo Leoon; Mexico.
| | - Piter Kehoma Boll
- Universidade do Vale do Rio dos Sinos; Avenida Unisinos; 950; 93022-750; São Leopoldo; RS; Brazil.
| |
Collapse
|
4
|
Fourcade Y, Winsor L, Justine J. Hammerhead worms everywhere? Modelling the invasion of bipaliin flatworms in a changing climate. DIVERS DISTRIB 2022. [DOI: 10.1111/ddi.13489] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Affiliation(s)
- Yoan Fourcade
- Univ Paris Est Creteil Sorbonne Université CNRS IRD INRAE Institut d’écologie et des sciences de l'environnement IEES Créteil France
| | - Leigh Winsor
- College of Science and Engineering James Cook University Townsville Queensland Australia
| | - Jean‐Lou Justine
- ISYEB Institut de Systématique Évolution Biodiversité UMR7205 MNHN CNRS EPHE UPMC Université des Antilles Muséum National d’Histoire Naturelle Paris France
| |
Collapse
|
5
|
Justine JL, Gastineau R, Gros P, Gey D, Ruzzier E, Charles L, Winsor L. Hammerhead flatworms (Platyhelminthes, Geoplanidae, Bipaliinae): mitochondrial genomes and description of two new species from France, Italy, and Mayotte. PeerJ 2022; 10:e12725. [PMID: 35178290 PMCID: PMC8815365 DOI: 10.7717/peerj.12725] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Accepted: 12/10/2021] [Indexed: 01/07/2023] Open
Abstract
BACKGROUND New records of alien land planarians are regularly reported worldwide, and some correspond to undescribed species of unknown geographic origin. The description of new species of land planarians (Geoplanidae) should classically be based on both external morphology and histology of anatomical structures, especially the copulatory organs, ideally with the addition of molecular data. METHODS Here, we describe the morphology and reproductive anatomy of a species previously reported as Diversibipalium "black", and the morphology of a species previously reported as Diversibipalium "blue". Based on next generation sequencing, we obtained the complete mitogenome of five species of Bipaliinae, including these two species. RESULTS The new species Humbertium covidum n. sp. (syn: Diversibipalium "black" of Justine et al., 2018) is formally described on the basis of morphology, histology and mitogenome, and is assigned to Humbertium on the basis of its reproductive anatomy. The type-locality is Casier, Italy, and other localities are in the Department of Pyrénées-Atlantiques, France; some published or unpublished records suggest that this species might also be present in Russia, China, and Japan. The mitogenomic polymorphism of two geographically distinct specimens (Italy vs France) is described; the cox1 gene displayed 2.25% difference. The new species Diversibipalium mayottensis n. sp. (syn: Diversibipalium "blue" of Justine et al., 2018) is formally described on the basis of external morphology and complete mitogenome and is assigned to Diversibipalium on the basis of an absence of information on its reproductive anatomy. The type- and only known locality is the island of Mayotte in the Mozambique Channel off Africa. Phylogenies of bipaliine geoplanids were constructed on the basis of SSU, LSU, mitochondrial proteins and concatenated sequences of cox1, SSU and LSU. In all four phylogenies, D. mayottensis was the sister-group to all the other bipaliines. With the exception of D. multilineatum which could not be circularised, the complete mitogenomes of B. kewense, B. vagum, B. adventitium, H. covidum and D. mayottensis were colinear. The 16S gene in all bipaliine species was problematic because usual tools were unable to locate its exact position. CONCLUSION Next generation sequencing, which can provide complete mitochondrial genomes as well as traditionally used genes such as SSU, LSU and cox1, is a powerful tool for delineating and describing species of Bipaliinae when the reproductive structure cannot be studied, which is sometimes the case of asexually reproducing invasive species. The unexpected position of the new species D. mayottensis as sister-group to all other Bipaliinae in all phylogenetic analyses suggests that the species could belong to a new genus, yet to be described.
Collapse
Affiliation(s)
- Jean-Lou Justine
- ISYEB-Institut de Systématique, Évolution, Biodiversité, Muséum National d’Histoire Naturelle, Paris, France
| | - Romain Gastineau
- Institute of Marine and Environmental Sciences, University of Szczecin, Szczecin, Poland
| | - Pierre Gros
- Amateur Naturalist, Unaffiliated, Cagnes-sur-Mer, France
| | - Delphine Gey
- Molécules de Communication et Adaptation des Micro-Organismes, Muséum National d’Histoire Naturelle, Paris, France
| | - Enrico Ruzzier
- Department of Agronomy, Food, Natural Resources, Animals and the Environment (DAFNAE), Padova, Italy
| | | | - Leigh Winsor
- James Cook University, Townsville, Queensland, Australia
| |
Collapse
|
6
|
Justine JL, Winsor L, Gey D, Gros P, Thévenot J. Obama chez moi! The invasion of metropolitan France by the land planarian Obama nungara (Platyhelminthes, Geoplanidae). PeerJ 2020; 8:e8385. [PMID: 32071801 PMCID: PMC7007977 DOI: 10.7717/peerj.8385] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2019] [Accepted: 12/11/2019] [Indexed: 11/20/2022] Open
Abstract
Background Obama nungara is a species of land flatworm originating from South America; the species was recently described and distinguished from a similar species, Obama marmorata. Obama nungara has invaded several countries of Europe, but the extent of the invasion has not been thoroughly mapped. Methods In this article, based on a five and a half-year survey undertaken by citizen science, which yielded 530 records from 2013 to 2018, we analysed information about the invasion of Metropolitan France by O. nungara. We also investigated the variability of newly obtained cytochrome c oxidase 1 (COI) sequences of specimens from France, Italy and Switzerland. Results Obama nungara was recorded from 72 of the 96 Departments of Metropolitan France. The species is especially abundant along the Atlantic coast, from the Spanish border to Brittany, and along the Mediterranean coast, from the Spanish border to the Italian border. More than half of the records were from an altitude below 50 m, and no record was from above 500 m; mountainous regions such as the Alps, Pyrenees and Massif Central are not invaded. Local abundance can be impressive, with 100 of specimens found in a small garden. An analysis of our new COI sequences, combined with published sequences of specimens from several countries, confirmed that three clades comprise the species. The first clade, ‘Brazil’, is currently confined to this country in South America; the second clade, ‘Argentina 2’, was found in Argentina and in Europe, only in Spain; and the third, ‘Argentina 1’, was found in Argentina and in Europe, in Spain, Portugal, France, UK, Italy, Belgium, and Switzerland. This suggests that two clades of O. nungara from Argentina have invaded Europe, with one widely spread. Discussion The present findings strongly suggest that O. nungara is a highly invasive species and that the population which has invaded several countries in Europe comes from Argentina. The wide dispersion of the species and its reported local abundance, combined with the predatory character of the species, make O. nungara a potential threat to the biodiversity and ecology of the native soil fauna in Europe, and probably the most threatening species of all invasive land planarians present in Europe.
Collapse
Affiliation(s)
- Jean-Lou Justine
- ISYEB, Institut de Systématique Évolution Biodiversité, UMR7205 CNRS, EPHE, MNHN, UPMC, Université des Antilles, Muséum National d'Histoire Naturelle, Paris, France
| | - Leigh Winsor
- College of Science and Engineering, James Cook University, Townsville, QLD, Australia
| | - Delphine Gey
- Service de Systématique Moléculaire, Museum National d'Histoire Naturelle, Paris, France
| | | | - Jessica Thévenot
- UMS Patrinat (CNRS-AFB-MNHN), Muséum National d'Histoire Naturelle, Paris, France
| |
Collapse
|