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Sweeney A, Arora A, Edwards SA, Mallidi S. Ultrasound-guided photoacoustic image annotation toolkit in MATLAB (PHANTOM) for preclinical applications. PHOTOACOUSTICS 2025; 41:100662. [PMID: 39687485 PMCID: PMC11648259 DOI: 10.1016/j.pacs.2024.100662] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Revised: 10/29/2024] [Accepted: 10/29/2024] [Indexed: 12/18/2024]
Abstract
Depth-dependent fluence-compensation in photoacoustic (PA) imaging is paramount for accurate quantification of chromophores from deep tissues. Here we present a user-friendly toolkit named PHANTOM (PHotoacoustic ANnotation TOolkit for MATLAB) that includes a graphical interface and assists in the segmentation of ultrasound-guided PA images. We modelled the light source configuration with Monte Carlo eXtreme and utilized 3D segmented tissues from ultrasound to generate fluence maps to depth compensate PA images. The methodology was used to analyze PA images of phantoms with varying blood oxygenation and results were validated with oxygen electrode measurements. Two preclinical models, a subcutaneous tumor and a calcified placenta, were imaged and fluence-compensated using the PHANTOM toolkit and the results were verified with immunohistochemistry. The PHANTOM toolkit provides scripts and auxiliary functions to enable biomedical researchers not specialized in optical imaging to apply fluence correction to PA images, enhancing accessibility of quantitative PAI for researchers in various fields.
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Affiliation(s)
- Allison Sweeney
- Department of Biomedical Engineering, Tufts University, Medford, MA, United States
| | - Aayush Arora
- Department of Biomedical Engineering, Tufts University, Medford, MA, United States
| | - Skye A. Edwards
- Department of Biomedical Engineering, Tufts University, Medford, MA, United States
| | - Srivalleesha Mallidi
- Department of Biomedical Engineering, Tufts University, Medford, MA, United States
- Wellman Center for Photomedicine, Massachusetts General Hospital, Boston, MA, United States
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Bolookat ER, Vincent-Chong VK, Rich LJ, Singh AK, Seshadri M. Ultrasound-Guided Photoacoustic Imaging of Salivary Gland Hemodynamics in Rabbits. PHOTONICS 2024; 11:273. [DOI: 10.3390/photonics11030273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/07/2025]
Abstract
Xerostomia (severe dry mouth) is a debilitating and often permanent side effect experienced by head and neck cancer patients due to radiation injury to salivary glands. In this study, we evaluated the potential of ultrasound (US)-guided photoacoustic imaging (PAI) to non-invasively assess early changes in salivary gland hemodynamics following radiation therapy (RT). US-guided PAI was performed in New Zealand white rabbits to visualize and quantify the hemoglobin concentration (HbT) and oxygen saturation (%sO2) of parotid glands before and after RT. The imaging findings were validated with histology and sialometry. An early increase in parotid gland HbT and %sO2 was seen following RT. Consistent with the PAI observations, histology of salivary glands revealed dilated blood vessels, along with hemorrhaging and fibrosis. Sialometric analysis confirmed a significant reduction in stimulated saliva secretion in irradiated rabbits compared to controls. Collectively, our findings demonstrate the translational utility of US-guided PAI as a valuable tool for label-free functional imaging of salivary gland hemodynamics in vivo.
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Affiliation(s)
- Eftekhar Rajab Bolookat
- Department of Oral Oncology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA
- Department of Radiation Oncology, University of North Carolina—School of Medicine, Chapel Hill, NC 27599, USA
| | - Vui King Vincent-Chong
- Department of Oral Oncology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA
| | - Laurie J. Rich
- Department of Oral Oncology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA
- Fujifilm Visualsonics Corporation, Toronto, ON M4N 3N1, Canada
| | - Anurag K. Singh
- Department of Radiation Medicine, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA
| | - Mukund Seshadri
- Department of Oral Oncology, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA
- Department of Radiology—Medical Physics Program, University at Buffalo-Jacobs School of Medicine and Biomedical Sciences, Buffalo, NY 14203, USA
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Sweeney A, Arora A, Edwards S, Mallidi S. Ultrasound-guided Photoacoustic image Annotation Toolkit in MATLAB (PHANTOM) for preclinical applications. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.11.07.565885. [PMID: 37986998 PMCID: PMC10659350 DOI: 10.1101/2023.11.07.565885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2023]
Abstract
Depth-dependent fluence-compensation in photoacoustic (PA) imaging is paramount for accurate quantification of chromophores from deep tissues. Here we present a user-friendly toolkit named PHANTOM (PHotoacoustic ANnotation TOolkit for MATLAB) that includes a graphical interface and assists in the segmentation of ultrasound-guided PA images. We modelled the light source configuration with Monte Carlo eXtreme and utilized 3D segmented tissues from ultrasound to generate fluence maps to depth compensate PA images. The methodology was used to analyze PA images of phantoms with varying blood oxygenation and results were validated with oxygen electrode measurements. Two preclinical models, a subcutaneous tumor and a calcified placenta, were imaged and fluence-compensated using the PHANTOM toolkit and the results were verified with immunohistochemistry. The PHANTOM toolkit provides scripts and auxiliary functions to enable biomedical researchers not specialized in optical imaging to apply fluence correction to PA images, enhancing accessibility of quantitative PAI for researchers in various fields.
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Affiliation(s)
- Allison Sweeney
- Department of Biomedical Engineering, Tufts University, Medford, MA, United States
| | - Aayush Arora
- Department of Biomedical Engineering, Tufts University, Medford, MA, United States
| | - Skye Edwards
- Department of Biomedical Engineering, Tufts University, Medford, MA, United States
| | - Srivalleesha Mallidi
- Department of Biomedical Engineering, Tufts University, Medford, MA, United States
- Wellman Center for Photomedicine, Massachusetts General Hospital, Boston, MA, United States
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Aboeleneen SB, Scully MA, Kramarenko GC, Day ES. Combination cancer imaging and phototherapy mediated by membrane-wrapped nanoparticles. Int J Hyperthermia 2023; 40:2272066. [PMID: 37903544 PMCID: PMC10698846 DOI: 10.1080/02656736.2023.2272066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Accepted: 10/11/2023] [Indexed: 11/01/2023] Open
Abstract
Cancer is a devastating health problem with inadequate treatment options. Many conventional treatments for solid-tumor cancers lack tumor specificity, which results in low efficacy and off-target damage to healthy tissues. Nanoparticle (NP)-mediated photothermal therapy (PTT) is a promising minimally invasive treatment for solid-tumor cancers that has entered clinical trials. Traditionally, NPs used for PTT are coated with passivating agents and/or targeting ligands, but alternative coatings are being explored to enhance tumor specific delivery. In particular, cell-derived membranes have emerged as promising coatings that improve the biointerfacing of photoactive NPs, which reduces their immune recognition, prolongs their systemic circulation and increases their tumor accumulation, allowing for more effective PTT. To maximize treatment success, membrane-wrapped nanoparticles (MWNPs) that enable dual tumor imaging and PTT are being explored. These multifunctional theranostic NPs can be used to enhance tumor detection and/or ensure a sufficient quantity of NPs that have arrived in the tumor prior to laser irradiation. This review summarizes the current state-of-the-art in engineering MWNPs for combination cancer imaging and PTT and discusses considerations for the path toward clinical translation.
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Affiliation(s)
- Sara B. Aboeleneen
- Department of Biomedical Engineering, University of Delaware, Newark, DE, USA
| | - Mackenzie A. Scully
- Department of Biomedical Engineering, University of Delaware, Newark, DE, USA
| | | | - Emily S. Day
- Department of Biomedical Engineering, University of Delaware, Newark, DE, USA
- Department of Materials Science & Engineering, University of Delaware, Newark, DE, USA
- Helen F. Graham Cancer Center & Research Institute, Newark, DE, USA
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Bolookat E, Rich L, Vincent-Chong V, DeJohn C, Merzianu M, Hershberger P, Singh A, Seshadri M. Noninvasive Monitoring of Radiation-Induced Salivary Gland Vascular Injury. J Dent Res 2023; 102:412-421. [PMID: 36515317 PMCID: PMC10154916 DOI: 10.1177/00220345221138533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
Xerostomia is a common side effect of radiation therapy (RT) in patients with head and neck cancer. However, limited information is available on the temporal dynamics of parenchymal and vascular changes in salivary glands following RT. To address this gap in knowledge, we conducted experimental studies in mice employing ultrasound (US) with coregistered photoacoustic imaging (PAI) to noninvasively assess the early and late changes in salivary gland size, structure, vascularity, and oxygenation dynamics following RT. Multiparametric US-PAI of salivary glands was performed in immune-deficient and immune-competent mice before and after RT along with correlative sialometry and ex vivo histologic-immunohistochemical validation. US revealed reduction in gland volume and an early increase in vascular resistance postradiation. This was accompanied by a reduction in glandular oxygen consumption on PAI. Imaging data correlated strongly with salivary secretion and histologic evidence of acinar damage. The magnitude and kinetics of radiation response were impacted by host immune status, with immunodeficient mice showing early and more pronounced vascular injury and DNA damage response compared to immunocompetent animals. Our findings demonstrate the ability of noninvasive US-PAI to monitor dynamic changes in salivary gland hemodynamics following radiation and highlight the impact of the host immune status on salivary gland radiation injury.
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Affiliation(s)
- E.R. Bolookat
- Cell Stress and Biophysical Oncology Graduate
Program, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA
- Department of Oral Oncology, Roswell Park
Comprehensive Cancer Center, Buffalo, NY, USA
| | - L.J. Rich
- Cell Stress and Biophysical Oncology Graduate
Program, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA
- Fujifilm Visualsonics Corporation, Toronto,
ON, Canada
| | - V.K. Vincent-Chong
- Department of Oral Oncology, Roswell Park
Comprehensive Cancer Center, Buffalo, NY, USA
| | - C.R. DeJohn
- Cell Stress and Biophysical Oncology Graduate
Program, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA
- Department of Oral Oncology, Roswell Park
Comprehensive Cancer Center, Buffalo, NY, USA
| | - M. Merzianu
- Department of Pathology, Roswell Park
Comprehensive Cancer Center, Buffalo, NY, USA
| | - P.A. Hershberger
- Department of Pharmacology and Therapeutics,
Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA
| | - A.K. Singh
- Department of Radiation Medicine, Roswell
Park Comprehensive Cancer Center, Buffalo, NY, USA
| | - M. Seshadri
- Cell Stress and Biophysical Oncology Graduate
Program, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA
- Department of Oral Oncology, Roswell Park
Comprehensive Cancer Center, Buffalo, NY, USA
- Department of Radiology, University at
Buffalo–Jacobs School of Medicine and Biomedical Sciences, Buffalo, NY, USA
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Palma-Chavez J, Pfefer TJ, Agrawal A, Jokerst JV, Vogt WC. Review of consensus test methods in medical imaging and current practices in photoacoustic image quality assessment. JOURNAL OF BIOMEDICAL OPTICS 2021; 26:JBO-210176VSSR. [PMID: 34510850 PMCID: PMC8434148 DOI: 10.1117/1.jbo.26.9.090901] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Accepted: 08/17/2021] [Indexed: 05/06/2023]
Abstract
SIGNIFICANCE Photoacoustic imaging (PAI) is a powerful emerging technology with broad clinical applications, but consensus test methods are needed to standardize performance evaluation and accelerate translation. AIM To review consensus image quality test methods for mature imaging modalities [ultrasound, magnetic resonance imaging (MRI), x-ray CT, and x-ray mammography], identify best practices in phantom design and testing procedures, and compare against current practices in PAI phantom testing. APPROACH We reviewed scientific papers, international standards, clinical accreditation guidelines, and professional society recommendations describing medical image quality test methods. Observations are organized by image quality characteristics (IQCs), including spatial resolution, geometric accuracy, imaging depth, uniformity, sensitivity, low-contrast detectability, and artifacts. RESULTS Consensus documents typically prescribed phantom geometry and material property requirements, as well as specific data acquisition and analysis protocols to optimize test consistency and reproducibility. While these documents considered a wide array of IQCs, reported PAI phantom testing focused heavily on in-plane resolution, depth of visualization, and sensitivity. Understudied IQCs that merit further consideration include out-of-plane resolution, geometric accuracy, uniformity, low-contrast detectability, and co-registration accuracy. CONCLUSIONS Available medical image quality standards provide a blueprint for establishing consensus best practices for photoacoustic image quality assessment and thus hastening PAI technology advancement, translation, and clinical adoption.
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Affiliation(s)
- Jorge Palma-Chavez
- University of California San Diego, Department of NanoEngineering, La Jolla, California, United States
| | - T. Joshua Pfefer
- Center for Devices and Radiological Health, U.S. Food and Drug Administration, Silver Spring, Maryland, United States
| | - Anant Agrawal
- Center for Devices and Radiological Health, U.S. Food and Drug Administration, Silver Spring, Maryland, United States
| | - Jesse V. Jokerst
- University of California San Diego, Department of NanoEngineering, La Jolla, California, United States
- University of California San Diego, Department of Radiology, La Jolla, California, United States
- University of California San Diego, Materials Science and Engineering Program, La Jolla, California, United States
| | - William C. Vogt
- Center for Devices and Radiological Health, U.S. Food and Drug Administration, Silver Spring, Maryland, United States
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Towards Transabdominal Functional Photoacoustic Imaging of the Placenta: Improvement in Imaging Depth Through Optimization of Light Delivery. Ann Biomed Eng 2021; 49:1861-1873. [PMID: 33909192 PMCID: PMC8373763 DOI: 10.1007/s10439-021-02777-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2020] [Accepted: 04/06/2021] [Indexed: 12/11/2022]
Abstract
Functional photoacoustic imaging of the placenta could provide an innovative tool to diagnose preeclampsia, monitor fetal growth restriction, and determine the developmental impacts of gestational diabetes. However, transabdominal photoacoustic imaging is limited in imaging depth due to the tissue's scattering and absorption of light. The aim of this paper was to investigate the impact of geometry and wavelength on transabdominal light delivery. Our methods included the development of a multilayer model of the abdominal tissue and simulation of the light propagation using Monte Carlo methods. A bifurcated light source with varying incident angle of light, distance between light beams, and beam area was simulated to analyze the effect of light delivery geometry on the fluence distribution at depth. The impact of wavelength and the effects of variable thicknesses of adipose tissue and muscle were also studied. Our results showed that the beam area plays a major role in improving the delivery of light to deep tissue, in comparison to light incidence angle or distance between the bifurcated fibers. Longer wavelengths, with incident fluence at the maximum permissible exposure limit, also increases fluence within deeper tissue. We validated our simulations using a commercially available light delivery system and ex vivo human placental tissue. Additionally, we compared our optimized light delivery to a commercially available light delivery system, and conclude that our optimized geometry could improve imaging depth more than 1.6×, bringing the imaging depth to within the needed range for transabdominal imaging of the human placenta.
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Al Mukaddim R, Weichmann AM, Mitchell CC, Varghese T. Enhancement of in vivo cardiac photoacoustic signal specificity using spatiotemporal singular value decomposition. JOURNAL OF BIOMEDICAL OPTICS 2021; 26:JBO-210037RR. [PMID: 33876591 PMCID: PMC8054608 DOI: 10.1117/1.jbo.26.4.046001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2021] [Accepted: 03/29/2021] [Indexed: 05/07/2023]
Abstract
SIGNIFICANCE Photoacoustic imaging (PAI) can be used to infer molecular information about myocardial health non-invasively in vivo using optical excitation at ultrasonic spatial resolution. For clinical and preclinical linear array imaging systems, conventional delay-and-sum (DAS) beamforming is typically used. However, DAS cardiac PA images are prone to artifacts such as diffuse quasi-static clutter with temporally varying noise-reducing myocardial signal specificity. Typically, multiple frame averaging schemes are utilized to improve the quality of cardiac PAI, which affects the spatial and temporal resolution and reduces sensitivity to subtle PA signal variation. Furthermore, frame averaging might corrupt myocardial oxygen saturation quantification due to the presence of natural cardiac wall motion. In this paper, a spatiotemporal singular value decomposition (SVD) processing algorithm is proposed to reduce DAS PAI artifacts and subsequent enhancement of myocardial signal specificity. AIM Demonstrate enhancement of PA signals from myocardial tissue compared to surrounding tissues and blood inside the left-ventricular (LV) chamber using spatiotemporal SVD processing with electrocardiogram (ECG) and respiratory signal (ECG-R) gated in vivo murine cardiac PAI. APPROACH In vivo murine cardiac PAI was performed by collecting single wavelength (850 nm) photoacoustic channel data on eight healthy mice. A three-dimensional (3D) volume of complex PAI data over a cardiac cycle was reconstructed using a custom ECG-R gating algorithm and DAS beamforming. Spatiotemporal SVD was applied on a two-dimensional Casorati matrix generated using the 3D volume of PAI data. The singular value spectrum (SVS) was then filtered to remove contributions from diffuse quasi-static clutter and random noise. Finally, SVD processed beamformed images were derived using filtered SVS and inverse SVD computations. RESULTS Qualitative comparison with DAS and minimum variance (MV) beamforming shows that SVD processed images had better myocardial signal specificity, contrast, and target detectability. DAS, MV, and SVD images were quantitatively evaluated by calculating contrast ratio (CR), generalized contrast-to-noise ratio (gCNR), and signal-to-noise ratio (SNR). Quantitative evaluations were done at three cardiac time points (during systole, at end-systole (ES), and during diastole) identified from co-registered ultrasound M-Mode image. Mean CR, gCNR, and SNR values of SVD images at ES were 245, 115.15, and 258.17 times higher than DAS images with statistical significance evaluated with one-way analysis of variance. CONCLUSIONS Our results suggest that significantly better-quality images can be realized using spatiotemporal SVD processing for in vivo murine cardiac PAI.
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Affiliation(s)
- Rashid Al Mukaddim
- University of Wisconsin–Madison, Department of ECE, Madison, Wisconsin, United States
- University of Wisconsin–Madison, School of Medicine and Public Health, Department of Medical Physics, Madison, Wisconsin, United States
- Address all correspondence to Rashid Al Mukaddim,
| | - Ashley M. Weichmann
- Small Animal Imaging and Radiotherapy Facility, UW Carbone Cancer Center, Wisconsin, United States
| | - Carol C. Mitchell
- University of Wisconsin School of Medicine and Public Health, Department of Medicine/Division of Cardiovascular Medicine, Madison, Wisconsin, United States
| | - Tomy Varghese
- University of Wisconsin–Madison, Department of ECE, Madison, Wisconsin, United States
- University of Wisconsin–Madison, School of Medicine and Public Health, Department of Medical Physics, Madison, Wisconsin, United States
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Multiangle Long-Axis Lateral Illumination Photoacoustic Imaging Using Linear Array Transducer. SENSORS 2020; 20:s20144052. [PMID: 32708170 PMCID: PMC7411732 DOI: 10.3390/s20144052] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Revised: 07/18/2020] [Accepted: 07/19/2020] [Indexed: 12/23/2022]
Abstract
Photoacoustic imaging (PAI) combines optical contrast with ultrasound spatial resolution and can be obtained up to a depth of a few centimeters. Hand-held PAI systems using linear array usually operate in reflection mode using a dark-field illumination scheme, where the optical fiber output is attached to both sides of the elevation plane (short-axis) of the transducer. More recently, bright-field strategies where the optical illumination is coaxial with acoustic detection have been proposed to overcome some limitations of the standard dark-field approach. In this paper, a novel multiangle long-axis lateral illumination is proposed. Monte Carlo simulations were conducted to evaluate light delivery for three different illumination schemes: bright-field, standard dark-field, and long-axis lateral illumination. Long-axis lateral illumination showed remarkable improvement in light delivery for targets with a width smaller than the transducer lateral dimension. A prototype was developed to experimentally demonstrate the feasibility of the proposed approach. In this device, the fiber bundle terminal ends are attached to both sides of the transducer’s long-axis and the illumination angle of each fiber bundle can be independently controlled. The final PA image is obtained by the coherent sum of subframes acquired using different angles. The prototype was experimentally evaluated by taking images from a phantom, a mouse abdomen, forearm, and index finger of a volunteer. The system provided light delivery enhancement taking advantage of the geometry of the target, achieving sufficient signal-to-noise ratio at clinically relevant depths.
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