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For: Shabash B, Wiese KC. Numerical integration methods and layout improvements in the context of dynamic RNA visualization. BMC Bioinformatics 2017;18:282. [PMID: 28558664 PMCID: PMC5450055 DOI: 10.1186/s12859-017-1682-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2017] [Accepted: 05/11/2017] [Indexed: 11/16/2022]  Open
Number Cited by Other Article(s)
1
Chaturvedi M, Rashid MA, Paliwal KK. RNA structure prediction using deep learning - A comprehensive review. Comput Biol Med 2025;188:109845. [PMID: 39983363 DOI: 10.1016/j.compbiomed.2025.109845] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2024] [Revised: 02/09/2025] [Accepted: 02/10/2025] [Indexed: 02/23/2025]
2
Schmidt MD, Kirkpatrick A, Heitsch C. RNAStructViz: Graphical base pairing analysis. Bioinformatics 2021;37:3660-3661. [PMID: 33823536 PMCID: PMC8545337 DOI: 10.1093/bioinformatics/btab197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Revised: 12/18/2020] [Indexed: 11/13/2022]  Open
3
Lu JS, Bindewald E, Kasprzak WK, Shapiro BA. RiboSketch: versatile visualization of multi-stranded RNA and DNA secondary structure. Bioinformatics 2019;34:4297-4299. [PMID: 29912310 DOI: 10.1093/bioinformatics/bty468] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2017] [Accepted: 06/12/2018] [Indexed: 02/02/2023]  Open
4
Shabash B, Wiese KC. jViz.RNA 4.0-Visualizing pseudoknots and RNA editing employing compressed tree graphs. PLoS One 2019;14:e0210281. [PMID: 31059508 PMCID: PMC6502502 DOI: 10.1371/journal.pone.0210281] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2018] [Accepted: 12/19/2018] [Indexed: 11/18/2022]  Open
5
Wiegreffe D, Alexander D, Stadler PF, Zeckzer D. RNApuzzler: efficient outerplanar drawing of RNA-secondary structures. Bioinformatics 2019. [DOI: 10.1093/bioinformatics/bty817 10.1093/bioinformatics/bty817] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]  Open
6
Wiegreffe D, Alexander D, Stadler PF, Zeckzer D. RNApuzzler: efficient outerplanar drawing of RNA-secondary structures. Bioinformatics 2018;35:1342-1349. [DOI: 10.1093/bioinformatics/bty817] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2018] [Revised: 08/09/2018] [Accepted: 09/18/2018] [Indexed: 11/12/2022]  Open
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