Dimitrova ES, Knapp AC, Stigler B, Stillman ME. Cyclone: open-source package for simulation and analysis of finite dynamical systems.
Bioinformatics 2023;
39:btad634. [PMID:
37856334 PMCID:
PMC10634519 DOI:
10.1093/bioinformatics/btad634]
[Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Revised: 08/11/2023] [Accepted: 10/17/2023] [Indexed: 10/21/2023] Open
Abstract
MOTIVATION
While there are software packages that analyze Boolean, ternary, or other multi-state models, none compute the complete state space of function-based models over any finite set. Results: We propose Cyclone, a simple light-weight software package which simulates the complete state space for a finite dynamical system over any finite set.
AVAILABILITY AND IMPLEMENTATION
Source code is freely available at https://github.com/discretedynamics/cyclone under the Apache-2.0 license.
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