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For: Juárez MA, Pennisi M, Russo G, Kiagias D, Curreli C, Viceconti M, Pappalardo F. Generation of digital patients for the simulation of tuberculosis with UISS-TB. BMC Bioinformatics 2020;21:449. [PMID: 33308156 PMCID: PMC7733699 DOI: 10.1186/s12859-020-03776-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Accepted: 09/22/2020] [Indexed: 01/11/2023]  Open
Number Cited by Other Article(s)
1
Karanasiou G, Edelman E, Boissel FH, Byrne R, Emili L, Fawdry M, Filipovic N, Flynn D, Geris L, Hoekstra A, Jori MC, Kiapour A, Krsmanovic D, Marchal T, Musuamba F, Pappalardo F, Petrini L, Reiterer M, Viceconti M, Zeier K, Michalis LK, Fotiadis DI. Advancing in Silico Clinical Trials for Regulatory Adoption and Innovation. IEEE J Biomed Health Inform 2025;29:2654-2668. [PMID: 39514353 DOI: 10.1109/jbhi.2024.3486538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2024]
2
Arsène S, Parès Y, Tixier E, Granjeon-Noriot S, Martin B, Bruezière L, Couty C, Courcelles E, Kahoul R, Pitrat J, Go N, Monteiro C, Kleine-Schultjann J, Jemai S, Pham E, Boissel JP, Kulesza A. In Silico Clinical Trials: Is It Possible? Methods Mol Biol 2024;2716:51-99. [PMID: 37702936 DOI: 10.1007/978-1-0716-3449-3_4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/14/2023]
3
Russo G, Crispino E, Maleki A, Di Salvatore V, Stanco F, Pappalardo F. Beyond the state of the art of reverse vaccinology: predicting vaccine efficacy with the universal immune system simulator for influenza. BMC Bioinformatics 2023;24:231. [PMID: 37271819 PMCID: PMC10239721 DOI: 10.1186/s12859-023-05374-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Accepted: 06/01/2023] [Indexed: 06/06/2023]  Open
4
Curreli C, Di Salvatore V, Russo G, Pappalardo F, Viceconti M. A Credibility Assessment Plan for an In Silico Model that Predicts the Dose-Response Relationship of New Tuberculosis Treatments. Ann Biomed Eng 2023;51:200-210. [PMID: 36115895 PMCID: PMC9483464 DOI: 10.1007/s10439-022-03078-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2022] [Accepted: 09/06/2022] [Indexed: 01/13/2023]
5
Pappalardo F, Russo G, Corsini E, Paini A, Worth A. Translatability and transferability of in silico models: Context of use switching to predict the effects of environmental chemicals on the immune system. Comput Struct Biotechnol J 2022;20:1764-1777. [PMID: 35495116 PMCID: PMC9035946 DOI: 10.1016/j.csbj.2022.03.024] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Revised: 03/23/2022] [Accepted: 03/24/2022] [Indexed: 02/08/2023]  Open
6
Kiagias D, Russo G, Sgroi G, Pappalardo F, Juárez MA. Bayesian Augmented Clinical Trials in TB Therapeutic Vaccination. FRONTIERS IN MEDICAL TECHNOLOGY 2022;3:719380. [PMID: 35047949 PMCID: PMC8757686 DOI: 10.3389/fmedt.2021.719380] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Accepted: 09/15/2021] [Indexed: 12/17/2022]  Open
7
Russo G, Di Salvatore V, Sgroi G, Parasiliti Palumbo GA, Reche PA, Pappalardo F. A multi-step and multi-scale bioinformatic protocol to investigate potential SARS-CoV-2 vaccine targets. Brief Bioinform 2021;23:6381250. [PMID: 34607353 PMCID: PMC8500048 DOI: 10.1093/bib/bbab403] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Revised: 08/30/2021] [Accepted: 09/02/2021] [Indexed: 12/21/2022]  Open
8
Henyš P, Vořechovský M, Kuchař M, Heinemann A, Kopal J, Ondruschka B, Hammer N. Bone mineral density modeling via random field: Normality, stationarity, sex and age dependence. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2021;210:106353. [PMID: 34500142 DOI: 10.1016/j.cmpb.2021.106353] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Accepted: 08/06/2021] [Indexed: 06/13/2023]
9
Musuamba FT, Skottheim Rusten I, Lesage R, Russo G, Bursi R, Emili L, Wangorsch G, Manolis E, Karlsson KE, Kulesza A, Courcelles E, Boissel JP, Rousseau CF, Voisin EM, Alessandrello R, Curado N, Dall'ara E, Rodriguez B, Pappalardo F, Geris L. Scientific and regulatory evaluation of mechanistic in silico drug and disease models in drug development: Building model credibility. CPT-PHARMACOMETRICS & SYSTEMS PHARMACOLOGY 2021;10:804-825. [PMID: 34102034 PMCID: PMC8376137 DOI: 10.1002/psp4.12669] [Citation(s) in RCA: 63] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 05/27/2021] [Accepted: 05/27/2021] [Indexed: 01/08/2023]
10
Pappalardo F, Russo G, Reche PA. Toward computational modelling on immune system function. BMC Bioinformatics 2020;21:546. [PMID: 33308137 PMCID: PMC7733695 DOI: 10.1186/s12859-020-03897-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
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