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Huang X, Luoluo, Xie D, Li Z. Dissimilatory nitrate reduction to ammonium in four Pseudomonas spp. under aerobic conditions. Heliyon 2023; 9:e14983. [PMID: 37064473 PMCID: PMC10102415 DOI: 10.1016/j.heliyon.2023.e14983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Revised: 03/21/2023] [Accepted: 03/23/2023] [Indexed: 03/30/2023] Open
Abstract
Dissimilatory nitrate reduction to ammonium (DNRA) has an important role in soil nitrogen retention and is considered to be constrained to anaerobic conditions. However, a recent study found that Pseudomonas putida Y-9 is capable of DNRA under aerobic conditions. In this study, four species of Pseudomonas spp. were found to produce ammonium during the nitrite reduction process under aerobic conditions, similar to the Y-9 strain. The detectable ammonium in the culture supernatant during the nitrite reduction process for each of the four strains originated intracellularly. A subsequent 15N isotope experiment showed that these four strains were able to transform 15NO2 - to 15NH4 + in 3 h under aerobic conditions. The NirBD sequence in each of the four strains showed high similarity with that in the Y-9 strain (approximately 94.61%). Moreover, the nirBD sequences in the four strains and the Y-9 strain were all similar to those of other Pseudomonas spp., while they were relatively distant in terms of their phylogenetic relationship from those of other genera. Overall, these results suggest that these four strains of Pseudomonas spp. are capable of DNRA under aerobic conditions, which might be attributed to the existence of nirBD.
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Fu D, Zhang L, Li H, Li F, Yue Z, Li Y, Cai Q. Effects of the nitrogen form ratios on photosynthetic productivity of poplar under condition of phenolic acids. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2022; 25:1189-1198. [PMID: 36368337 DOI: 10.1080/15226514.2022.2144795] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Phenolic acids can reduce nitrogen utilization rate of poplar, which seriously restrict the productivity of poplar plantation. In this study, three phenolic acid concentrations (T0, T1, and T2) and three ratios of nitrogen forms (NH4+-N to NO3--were 1:3, 1:7, and 1:14) were chosen for orthogonal experiment on poplar (Populus × euramericana "Neva") seedlings to study the effects of the nitrogen form ratios on photosynthetic productivity of poplar under environment of phenolic acids. Results showed that photosynthetic physiology parameters were influenced by both phenolic acid concentration and nitrogen form ratio. The order of net photosynthetic rate (PN) values obtained from 9 treatments were T1-1:3, T0-1:3, T2-1:3, T0-1:7, T1-1:7, T0-1:14, T2-1:7, T1-1:14, and T2-1:14 (from high to low). Under environment of phenolic acids, when poplar were treated with NH4+-N to NO3--N ratio of 1:14, the major limitation factor of photosynthesis was non stomatal factor. When poplar were treated with NH4+-N to NO3-N ratio of 1:3, the major limitation factor of photosynthesis changed to stomatal factor. The leaf nitrogen content and total biomass were obviously positively related with PN (p < 0.05). Phenolic acid inhibited photosynthetic productivity of poplar in a major way and this effect decreased with increase of the content of NH4+-N.
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Affiliation(s)
- Degang Fu
- College of agriculture and forestry science, Linyi University, Lin'yi, China
- Shandong Provincial Forestry Protection and Development Service Center, Ji'nan, Shandong province, China
| | - Liudong Zhang
- Shandong Provincial Forestry Protection and Development Service Center, Ji'nan, Shandong province, China
| | - Hui Li
- College of agriculture and forestry science, Linyi University, Lin'yi, China
| | - Feng Li
- State-owned Yishan Forest Farm of Yishui County, Yi'shui, Shandong, China
| | - Zongjie Yue
- State-owned Shenxian Forest Management Center o Shenxian County, Shenxian, Shandong, China
| | - Yaobin Li
- State-owned Donming Forest Farm of Shandong Province, Dong'ming, Shandong, China
| | - Qicheng Cai
- State-owned Yishan Forest Farm of Yishui County, Yi'shui, Shandong, China
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3
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Yuan S, Ling Y, Xiong Y, Zhang C, Sha L, You M, Lei X, Bai S, Ma X. Effect of nitrogen fertilizer on seed yield and quality of Kengyilia melanthera (Triticeae, Poaceae). PeerJ 2022; 10:e14101. [PMID: 36168437 PMCID: PMC9509668 DOI: 10.7717/peerj.14101] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2022] [Accepted: 09/01/2022] [Indexed: 01/21/2023] Open
Abstract
Widely distributed in the alpine sandy grassland in east Qinghai-Tibet Plateau (QTP), Kengyilia melanthera is considered as an ideal pioneer grass for the restoration of degraded and desertification grassland in the region. Under the special ecological and climatic conditions in the northwest Sichuan plateau located in east QTP, it is of great significance to optimize the amount of nitrogen fertilizer for the seed production of this species. The impact of nitrogen (N) fertilizer application on seed yield and quality of K. melanthera 'Aba', the only domesticated variety in the Kengyilia genus of Poaceae, was investigated based on two-year field experiments in the northwestern Sichuan plateau. The results showed that with the increase of N fertilizer application, the number of tillers, number of fertile tillers, 1,000-seed weight and seed yield of this species increased likewise. The optimum N fertilizer rate deduced in the present study was 180 kg·hm-2, where the number of fertile tillers 1,000-seed weight and seed yield reached the peak values. Interestingly, the standard germination rate, germination energy, accelerated aging germination rate, dehydrogenase and acid phosphatase activity of seeds were not affected by the increasing the input of N fertilizer. The comprehensive evaluation of membership function showed that the optimal N fertilizer treatment was 180 kg·hm-2 both for 2016 and 2017. This study provided a certain practical suggestion for the improvement of seed production of K. melanthera in the northwest Sichuan plateau.
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Affiliation(s)
- Shuai Yuan
- Sichuan Agricultural University, Chengdu, China
| | - Yao Ling
- Sichuan Agricultural University, Chengdu, China
| | - Yi Xiong
- Sichuan Agricultural University, Chengdu, China
| | | | - Lina Sha
- Sichuan Agricultural University, Chengdu, China
| | - Minghong You
- Sichuan Academy of Grassland Sciences, Chengdu, China
| | - Xiong Lei
- Sichuan Academy of Grassland Sciences, Chengdu, China
| | - Shiqie Bai
- Sichuan Academy of Grassland Sciences, Chengdu, China
| | - Xiao Ma
- Sichuan Agricultural University, Chengdu, China
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Huang X, Tie W, Xie D, Jiang D, Li Z. Certain Environmental Conditions Maximize Ammonium Accumulation and Minimize Nitrogen Loss During Nitrate Reduction Process by Pseudomonas putida Y-9. Front Microbiol 2021; 12:764241. [PMID: 34966364 PMCID: PMC8710668 DOI: 10.3389/fmicb.2021.764241] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Accepted: 11/11/2021] [Indexed: 11/17/2022] Open
Abstract
Realizing the smallest nitrogen loss is a challenge in the nitrate reduction process. Dissimilatory nitrate reduction to ammonium (DNRA) and nitrate assimilation play crucial roles in nitrogen retention. In this study, the effects of the carbon source, C/N ratio, pH, and dissolved oxygen on the multiple nitrate reduction pathways conducted by Pseudomonas putida Y-9 are explored. Strain Y-9 efficiently removed nitrate (up to 89.79%) with glucose as the sole carbon source, and the nitrogen loss in this system was 15.43%. The total nitrogen decrease and ammonium accumulation at a C/N ratio of 9 were lower than that at 12 and higher than that at 15, respectively (P < 0.05). Besides, neutral and alkaline conditions (pH 7–9) favored nitrate reduction. Largest nitrate removal (81.78%) and minimum nitrogen loss (10.63%) were observed at pH 7. The nitrate removal and ammonium production efficiencies of strain Y-9 increased due to an increased shaking speed. The expression patterns of nirBD (the gene that controls nitrate assimilation and DNRA) in strain Y-9 were similar to ammonium patterns of the tested incubation conditions. In summary, the following conditions facilitated nitrate assimilation and DNRA by strain Y-9, while reducing the denitrification: glucose as the carbon source, a C/N ratio of 9, a pH of 7, and a shaking speed of 150 rpm. Under these conditions, nitrate removal was substantial, and nitrogen loss from the system was minimal.
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Affiliation(s)
- Xuejiao Huang
- Key Laboratory of (Guang Xi) Agricultural Environment and Products Safety, College of Agronomy, Guangxi University, Nanning, China.,Chongqing Key Laboratory of Soil Multiscale Interfacial Process, Southwest University, Chongqing, China
| | - Wenzhou Tie
- Key Laboratory of (Guang Xi) Agricultural Environment and Products Safety, College of Agronomy, Guangxi University, Nanning, China
| | - Deti Xie
- Chongqing Key Laboratory of Soil Multiscale Interfacial Process, Southwest University, Chongqing, China
| | - Daihua Jiang
- Key Laboratory of (Guang Xi) Agricultural Environment and Products Safety, College of Agronomy, Guangxi University, Nanning, China
| | - Zhenlun Li
- Chongqing Key Laboratory of Soil Multiscale Interfacial Process, Southwest University, Chongqing, China
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Piñero MC, Otálora G, López-Marín J, Del Amor FM. Nitrogen management under increased atmospheric CO 2 concentration in cucumber (Cucumis sativus L.): ameliorating environmental impacts of fertilization. Sci Rep 2021; 11:22318. [PMID: 34785756 PMCID: PMC8595347 DOI: 10.1038/s41598-021-01882-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Accepted: 10/25/2021] [Indexed: 11/29/2022] Open
Abstract
In the last years, the atmospheric CO2 concentration has increased significantly, and this increase can cause changes in various physiological and biochemical processes of plants. However, the response of plants to elevated CO2 concentration (e[CO2]) will be different depending on the nitrogen form available and the plant species. Therefore, hydroponic trials on cucumber plants, with two CO2 concentrations (400 and 1000 ppm) and two nitrogen sources (NO3-/NH4+; 100/0 and 90/10), were conducted. Physiological parameters-such as gas exchange, GS, GOGAT and GDH activities, cation composition, soluble sugar and starch content- were measured. The results showed that when plants were grown with NH4+ and e[CO2], parameters such as photosynthesis rate (ACO2), instantaneous water use efficiency (WUEi), the content of NH4+, Ca2+ and Mg2+, and the concentration of starch, were higher than in control plants (irrigated with nitrate as sole nitrogen source and ambient CO2 concentration (a[CO2])). Furthermore, an improvement in N assimilation was observed when the GS/GOGAT pathway was enhanced under these conditions (NH4+ and e[CO2]). Thus, our results contribute to the reduction of the negative environmental impacts of the use of nitrogen fertilizers on this crop, both by reducing nitrogen leakage (eutrophication) and greenhouse gas emissions.
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Affiliation(s)
- María Carmen Piñero
- Department of Crop Production and Agri-Technology, Murcia Institute of Agri-Food Research and Development (IMIDA), C/Mayor s/n, 30150, Murcia, Spain.
| | - Ginés Otálora
- Department of Crop Production and Agri-Technology, Murcia Institute of Agri-Food Research and Development (IMIDA), C/Mayor s/n, 30150, Murcia, Spain
| | - Josefa López-Marín
- Department of Crop Production and Agri-Technology, Murcia Institute of Agri-Food Research and Development (IMIDA), C/Mayor s/n, 30150, Murcia, Spain
| | - Francisco M Del Amor
- Department of Crop Production and Agri-Technology, Murcia Institute of Agri-Food Research and Development (IMIDA), C/Mayor s/n, 30150, Murcia, Spain
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Wang Y, Wang D, Tao Z, Yang Y, Gao Z, Zhao G, Chang X. Impacts of Nitrogen Deficiency on Wheat ( Triticum aestivum L.) Grain During the Medium Filling Stage: Transcriptomic and Metabolomic Comparisons. FRONTIERS IN PLANT SCIENCE 2021; 12:674433. [PMID: 34421938 PMCID: PMC8371442 DOI: 10.3389/fpls.2021.674433] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Accepted: 07/02/2021] [Indexed: 05/08/2023]
Abstract
Nitrogen (N) supplementation is essential to the yield and quality of bread wheat (Triticum aestivum L.). The impact of N-deficiency on wheat at the seedling stage has been previously reported, but the impact of distinct N regimes applied at the seedling stage with continuous application on filling and maturing wheat grains is lesser known, despite the filling stage being critical for final grain yield and flour quality. Here, we compared phenotype characteristics such as grain yield, grain protein and sugar quality, plant growth, leaf photosynthesis of wheat under N-deficient and N-sufficient conditions imposed prior to sowing (120 kg/hm2) and in the jointing stage (120 kg/hm2), and then evaluated the effects of this continued stress through RNA-seq and GC-MS metabolomics profiling of grain at the mid-filling stage. The results showed that except for an increase in grain size and weight, and in the content of total sugar, starch, and fiber in bran fraction and white flour, the other metrics were all decreased under N-deficiency conditions. A total of 761 differentially expressed genes (DEGs) and 77 differentially accumulated metabolites (DAMs) were identified. Under N-deficiency, 51 down-regulated DEGs were involved in the process of impeding chlorophyll synthesis, chloroplast development, light harvesting, and electron transfer functions of photosystem, which resulted in the SPAD and Pn value decreased by 32 and 15.2% compared with N-sufficiency, inhibited photosynthesis. Twenty-four DEGs implicated the inhibition of amino acids synthesis and protein transport, in agreement with a 17-42% reduction in ornithine, cysteine, aspartate, and tyrosine from metabolome, and an 18.6% reduction in grain protein content. However, 14 DEGs were implicated in promoting sugar accumulation in the cell wall and another six DEGs also enhanced cell wall synthesis, which significantly increased fiber content in the endosperm and likely contributed to increasing the thousands-grain weight (TGW). Moreover, RNA-seq profiling suggested that wheat grain can improve the capacity of DNA repair, iron uptake, disease and abiotic stress resistance, and oxidative stress scavenging through increasing the content levels of anthocyanin, flavonoid, GABA, galactose, and glucose under N-deficiency condition. This study identified candidate genes and metabolites related to low N adaption and tolerance that may provide new insights into a comprehensive understanding of the genotype-specific differences in performance under N-deficiency conditions.
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Affiliation(s)
- Yanjie Wang
- Center for Crop Management and Farming System, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences/Key Laboratory of Crop Physiology and Ecology, Ministry of Agriculture, Beijing, China
| | - Demei Wang
- Center for Crop Management and Farming System, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences/Key Laboratory of Crop Physiology and Ecology, Ministry of Agriculture, Beijing, China
| | - Zhiqiang Tao
- Center for Crop Management and Farming System, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences/Key Laboratory of Crop Physiology and Ecology, Ministry of Agriculture, Beijing, China
| | - Yushuang Yang
- Center for Crop Management and Farming System, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences/Key Laboratory of Crop Physiology and Ecology, Ministry of Agriculture, Beijing, China
| | - Zhenxian Gao
- Wheat Research Center, Shijiazhuang Academy of Agricultural and Forestry Sciences, Shijiazhuang, China
| | - Guangcai Zhao
- Center for Crop Management and Farming System, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences/Key Laboratory of Crop Physiology and Ecology, Ministry of Agriculture, Beijing, China
- *Correspondence: Guangcai Zhao
| | - Xuhong Chang
- Center for Crop Management and Farming System, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences/Key Laboratory of Crop Physiology and Ecology, Ministry of Agriculture, Beijing, China
- Xuhong Chang
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