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For: Yang MQ, Weissman SM, Yang W, Zhang J, Canaann A, Guan R. MISC: missing imputation for single-cell RNA sequencing data. BMC Syst Biol 2018;12:114. [PMID: 30547798 PMCID: PMC6293493 DOI: 10.1186/s12918-018-0638-y] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Number Cited by Other Article(s)
1
Goh WWB, Hui HWH, Wong L. How missing value imputation is confounded with batch effects and what you can do about it. Drug Discov Today 2023;28:103661. [PMID: 37301250 DOI: 10.1016/j.drudis.2023.103661] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 05/31/2023] [Accepted: 06/05/2023] [Indexed: 06/12/2023]
2
Zhu Z, Chen Y, Qin X, Liu S, Wang J, Ren H. Multidimensional landscape of non-alcoholic fatty liver disease-related disease spectrum uncovered by big omics data: Profiling evidence and new perspectives. SMART MEDICINE 2023;2:e20220029. [PMID: 39188279 PMCID: PMC11236021 DOI: 10.1002/smmd.20220029] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Accepted: 02/22/2023] [Indexed: 08/28/2024]
3
Pati SK, Gupta MK, Shai R, Banerjee A, Ghosh A. Missing value estimation of microarray data using Sim-GAN. Knowl Inf Syst 2022. [DOI: 10.1007/s10115-022-01718-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
4
Gossmann TI, Waxman D. Correcting Bias in Allele Frequency Estimates Due to an Observation Threshold: A Markov Chain Analysis. Genome Biol Evol 2022;14:evac047. [PMID: 35349695 PMCID: PMC9016752 DOI: 10.1093/gbe/evac047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/23/2022] [Indexed: 11/30/2022]  Open
5
Lovero D, D'Oronzo S, Palmirotta R, Cafforio P, Brown J, Wood S, Porta C, Lauricella E, Coleman R, Silvestris F. Correlation between targeted RNAseq signature of breast cancer CTCs and onset of bone-only metastases. Br J Cancer 2022;126:419-429. [PMID: 34272498 PMCID: PMC8810805 DOI: 10.1038/s41416-021-01481-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Revised: 06/04/2021] [Accepted: 06/30/2021] [Indexed: 02/06/2023]  Open
6
Jiang R, Sun T, Song D, Li JJ. Statistics or biology: the zero-inflation controversy about scRNA-seq data. Genome Biol 2022;23:31. [PMID: 35063006 PMCID: PMC8783472 DOI: 10.1186/s13059-022-02601-5] [Citation(s) in RCA: 178] [Impact Index Per Article: 59.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Accepted: 01/04/2022] [Indexed: 12/13/2022]  Open
7
Mazan-Mamczarz K, Ha J, De S, Sen P. Single-Cell Analysis of the Transcriptome and Epigenome. Methods Mol Biol 2022;2399:21-60. [PMID: 35604552 PMCID: PMC9352558 DOI: 10.1007/978-1-0716-1831-8_3] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
8
Patruno L, Maspero D, Craighero F, Angaroni F, Antoniotti M, Graudenzi A. A review of computational strategies for denoising and imputation of single-cell transcriptomic data. Brief Bioinform 2021;22:bbaa222. [PMID: 33003202 DOI: 10.1093/bib/bbaa222] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 08/07/2020] [Accepted: 08/19/2020] [Indexed: 12/18/2022]  Open
9
Odenkirk MT, Reif DM, Baker ES. Multiomic Big Data Analysis Challenges: Increasing Confidence in the Interpretation of Artificial Intelligence Assessments. Anal Chem 2021;93:7763-7773. [PMID: 34029068 PMCID: PMC8465926 DOI: 10.1021/acs.analchem.0c04850] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
10
Zhu X, Wang J, Sun B, Ren C, Yang T, Ding J. An efficient ensemble method for missing value imputation in microarray gene expression data. BMC Bioinformatics 2021;22:188. [PMID: 33849444 PMCID: PMC8045198 DOI: 10.1186/s12859-021-04109-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Accepted: 03/29/2021] [Indexed: 11/10/2022]  Open
11
Thomas T, Rajabi E. A systematic review of machine learning-based missing value imputation techniques. DATA TECHNOLOGIES AND APPLICATIONS 2021. [DOI: 10.1108/dta-12-2020-0298] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
12
Peng A, Mao X, Zhong J, Fan S, Hu Y. Single-Cell Multi-Omics and Its Prospective Application in Cancer Biology. Proteomics 2020;20:e1900271. [PMID: 32223079 DOI: 10.1002/pmic.201900271] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2019] [Revised: 02/29/2020] [Indexed: 01/24/2023]
13
Yang MQ, Weissman SM, Yang W, Zhang J, Canaan A, Guan R. Correction to: MISC: missing imputation for single-cell RNA sequencing data. BMC SYSTEMS BIOLOGY 2019;13:13. [PMID: 30670065 PMCID: PMC6343234 DOI: 10.1186/s12918-019-0681-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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