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For: Wang Z, Huang P, You R, Sun F, Zhu S. MetaBinner: a high-performance and stand-alone ensemble binning method to recover individual genomes from complex microbial communities. Genome Biol 2023;24:1. [PMID: 36609515 PMCID: PMC9817263 DOI: 10.1186/s13059-022-02832-6] [Citation(s) in RCA: 35] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Accepted: 12/05/2022] [Indexed: 01/09/2023]  Open
Number Cited by Other Article(s)
1
Hoops SL, Moutsoglou D, Vaughn BP, Khoruts A, Knights D. Metagenomic source tracking after microbiota transplant therapy. Gut Microbes 2025;17:2487840. [PMID: 40229213 PMCID: PMC12005403 DOI: 10.1080/19490976.2025.2487840] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/13/2024] [Revised: 03/07/2025] [Accepted: 03/28/2025] [Indexed: 04/16/2025]  Open
2
Qayyum H, Ishaq Z, Ali A, Kayani MUR, Huang L. Genome-resolved metagenomics from short-read sequencing data in the era of artificial intelligence. Funct Integr Genomics 2025;25:124. [PMID: 40493087 DOI: 10.1007/s10142-025-01625-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2025] [Revised: 04/29/2025] [Accepted: 05/22/2025] [Indexed: 06/12/2025]
3
Yu Y, Lin Y, Gu C, Man F, Ma S, Xue Y, Ren H, Xu K. Algae biofilm produces less microbe-derived dissolved organic nitrogen under higher C/N ratio conditions. ENVIRONMENTAL RESEARCH 2025;280:121897. [PMID: 40393536 DOI: 10.1016/j.envres.2025.121897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2025] [Revised: 05/11/2025] [Accepted: 05/17/2025] [Indexed: 05/22/2025]
4
Tóth AG, Solymosi N, Tenk M, Káldy Z, Németh T. First Animal Source Metagenome Assembly of Lawsonella clevelandensis from Canine External Otitis. Pathogens 2025;14:465. [PMID: 40430785 PMCID: PMC12114289 DOI: 10.3390/pathogens14050465] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2025] [Revised: 05/07/2025] [Accepted: 05/08/2025] [Indexed: 05/29/2025]  Open
5
Meyer F, Robertson G, Deng ZL, Koslicki D, Gurevich A, McHardy AC. CAMI Benchmarking Portal: online evaluation and ranking of metagenomic software. Nucleic Acids Res 2025:gkaf369. [PMID: 40331433 DOI: 10.1093/nar/gkaf369] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2025] [Revised: 04/17/2025] [Accepted: 04/23/2025] [Indexed: 05/08/2025]  Open
6
Filis G, Bezantakou D, Rigkos K, Noti D, Saridis P, Zarafeta D, Skretas G. ProteoSeeker: A Feature-Rich Metagenomic Analysis Tool for Accessible and Comprehensive Metagenomic Exploration. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2025;12:e2414877. [PMID: 40130725 PMCID: PMC12097006 DOI: 10.1002/advs.202414877] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/13/2024] [Revised: 02/26/2025] [Indexed: 03/26/2025]
7
Kong F, Wang S, Zhang Y, Li C, Dai D, Wang Y, Cao Z, Yang H, Shengli Li, Wei Wang. Alanine Derived from Ruminococcus_E bovis Alleviates Energy Metabolic Disorders during the Peripartum Period by Providing Glucogenic Precursors. RESEARCH (WASHINGTON, D.C.) 2025;8:0682. [PMID: 40290137 PMCID: PMC12022398 DOI: 10.34133/research.0682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/03/2025] [Revised: 03/19/2025] [Accepted: 03/31/2025] [Indexed: 04/30/2025]
8
Han H, Wang Z, Zhu S. Benchmarking metagenomic binning tools on real datasets across sequencing platforms and binning modes. Nat Commun 2025;16:2865. [PMID: 40128535 PMCID: PMC11933696 DOI: 10.1038/s41467-025-57957-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Accepted: 03/07/2025] [Indexed: 03/26/2025]  Open
9
Herazo-Álvarez J, Mora M, Cuadros-Orellana S, Vilches-Ponce K, Hernández-García R. A review of neural networks for metagenomic binning. Brief Bioinform 2025;26:bbaf065. [PMID: 40131312 PMCID: PMC11934572 DOI: 10.1093/bib/bbaf065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2024] [Revised: 01/02/2025] [Accepted: 03/07/2025] [Indexed: 03/26/2025]  Open
10
Sirasani JP, Gardner C, Jung G, Lee H, Ahn TH. Bioinformatic approaches to blood and tissue microbiome analyses: challenges and perspectives. Brief Bioinform 2025;26:bbaf176. [PMID: 40269515 PMCID: PMC12018304 DOI: 10.1093/bib/bbaf176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2024] [Revised: 03/05/2025] [Accepted: 03/25/2025] [Indexed: 04/25/2025]  Open
11
Geers AU, Michoud G, Busi SB, Peter H, Kohler TJ, Ezzat L, The Vanishing Glaciers Field TeamStyllasMichael1SchönMartina1TolosanoMatteo1de StaerckeVincent1PeterHannes1KohlerTyler2BattinTom J.1River Ecosystems Laboratory, Alpine and Polar Environmental Research Center, EcolePolytechnique Fédérale de Lausanne (EPFL), Sion, SwitzerlandDepartment of Ecology, Faculty of Science, Charles University, Prague, Czechia, Battin TJ. Deciphering the biosynthetic landscape of biofilms in glacier-fed streams. mSystems 2025;10:e0113724. [PMID: 39745394 PMCID: PMC11834409 DOI: 10.1128/msystems.01137-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2024] [Accepted: 12/09/2024] [Indexed: 02/19/2025]  Open
12
Bourquin M, Peter H, Michoud G, Busi SB, Kohler TJ, Robison AL, Styllas M, Ezzat L, Geers AU, Huss M, Fodelianakis S, Battin TJ. Predicting climate-change impacts on the global glacier-fed stream microbiome. Nat Commun 2025;16:1264. [PMID: 39893166 PMCID: PMC11787367 DOI: 10.1038/s41467-025-56426-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Accepted: 01/16/2025] [Indexed: 02/04/2025]  Open
13
Michoud G, Peter H, Busi SB, Bourquin M, Kohler TJ, Geers A, Ezzat L, Battin TJ. Mapping the metagenomic diversity of the multi-kingdom glacier-fed stream microbiome. Nat Microbiol 2025;10:217-230. [PMID: 39747693 DOI: 10.1038/s41564-024-01874-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Accepted: 10/29/2024] [Indexed: 01/04/2025]
14
Yepes-García J, Falquet L. Metagenome quality metrics and taxonomical annotation visualization through the integration of MAGFlow and BIgMAG. F1000Res 2024;13:640. [PMID: 39360247 PMCID: PMC11445639 DOI: 10.12688/f1000research.152290.2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 09/03/2024] [Indexed: 10/04/2024]  Open
15
Lin Y, Chen Y, Wang H, Yu Y, Wang Y, Ma S, Wang L, Ren H, Xu K. Weak magnetic field promotes denitrification by stimulating ferromagnetic ion-containing metalloprotein expression. WATER RESEARCH 2024;262:122116. [PMID: 39032337 DOI: 10.1016/j.watres.2024.122116] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Revised: 07/09/2024] [Accepted: 07/16/2024] [Indexed: 07/23/2024]
16
Hosseini SY, Mallick R, Mäkinen P, Ylä-Herttuala S. Insights into Prime Editing Technology: A Deep Dive into Fundamentals, Potentials, and Challenges. Hum Gene Ther 2024;35:649-668. [PMID: 38832869 DOI: 10.1089/hum.2024.043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2024]  Open
17
Mangal V, Verma LK, Singh SK, Saxena K, Roy A, Karn A, Rohit R, Kashyap S, Bhatt A, Sood S. Triumphs of genomic-assisted breeding in crop improvement. Heliyon 2024;10:e35513. [PMID: 39170454 PMCID: PMC11336775 DOI: 10.1016/j.heliyon.2024.e35513] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2024] [Revised: 07/23/2024] [Accepted: 07/30/2024] [Indexed: 08/23/2024]  Open
18
Shaw J, Yu YW. Fairy: fast approximate coverage for multi-sample metagenomic binning. MICROBIOME 2024;12:151. [PMID: 39143609 PMCID: PMC11323348 DOI: 10.1186/s40168-024-01861-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Accepted: 06/20/2024] [Indexed: 08/16/2024]
19
Saha E, Ben Guebila M, Fanfani V, Fischer J, Shutta KH, Mandros P, DeMeo DL, Quackenbush J, Lopes-Ramos CM. Gene regulatory networks reveal sex difference in lung adenocarcinoma. Biol Sex Differ 2024;15:62. [PMID: 39107837 PMCID: PMC11302009 DOI: 10.1186/s13293-024-00634-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Accepted: 07/04/2024] [Indexed: 08/10/2024]  Open
20
Mallawaarachchi V, Wickramarachchi A, Xue H, Papudeshi B, Grigson SR, Bouras G, Prahl RE, Kaphle A, Verich A, Talamantes-Becerra B, Dinsdale EA, Edwards RA. Solving genomic puzzles: computational methods for metagenomic binning. Brief Bioinform 2024;25:bbae372. [PMID: 39082646 PMCID: PMC11289683 DOI: 10.1093/bib/bbae372] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Revised: 06/05/2024] [Accepted: 07/15/2024] [Indexed: 08/03/2024]  Open
21
Darabi A, Sobhani S, Aghdam R, Eslahchi C. AFITbin: a metagenomic contig binning method using aggregate l-mer frequency based on initial and terminal nucleotides. BMC Bioinformatics 2024;25:241. [PMID: 39014300 PMCID: PMC11253361 DOI: 10.1186/s12859-024-05859-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2023] [Accepted: 07/09/2024] [Indexed: 07/18/2024]  Open
22
Sadurski J, Polak-Berecka M, Staniszewski A, Waśko A. Step-by-Step Metagenomics for Food Microbiome Analysis: A Detailed Review. Foods 2024;13:2216. [PMID: 39063300 PMCID: PMC11276190 DOI: 10.3390/foods13142216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 07/11/2024] [Accepted: 07/12/2024] [Indexed: 07/28/2024]  Open
23
Yu T, Ren Z, Gao X, Li G, Han R. Generating barcodes for nanopore sequencing data with PRO. FUNDAMENTAL RESEARCH 2024;4:785-794. [PMID: 39660352 PMCID: PMC11630701 DOI: 10.1016/j.fmre.2024.04.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Revised: 02/20/2024] [Accepted: 04/09/2024] [Indexed: 12/12/2024]  Open
24
Kim N, Ma J, Kim W, Kim J, Belenky P, Lee I. Genome-resolved metagenomics: a game changer for microbiome medicine. Exp Mol Med 2024;56:1501-1512. [PMID: 38945961 PMCID: PMC11297344 DOI: 10.1038/s12276-024-01262-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Revised: 03/06/2024] [Accepted: 03/25/2024] [Indexed: 07/02/2024]  Open
25
Lv Z, Jiang S, Kong S, Zhang X, Yue J, Zhao W, Li L, Lin S. Advances in Single-Cell Transcriptome Sequencing and Spatial Transcriptome Sequencing in Plants. PLANTS (BASEL, SWITZERLAND) 2024;13:1679. [PMID: 38931111 PMCID: PMC11207393 DOI: 10.3390/plants13121679] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2024] [Revised: 05/31/2024] [Accepted: 06/14/2024] [Indexed: 06/28/2024]
26
Yan Q, Li S, Yan Q, Huo X, Wang C, Wang X, Sun Y, Zhao W, Yu Z, Zhang Y, Guo R, Lv Q, He X, Yao C, Li Z, Chen F, Ji Q, Zhang A, Jin H, Wang G, Feng X, Feng L, Wu F, Ning J, Deng S, An Y, Guo DA, Martin FM, Ma X. A genomic compendium of cultivated human gut fungi characterizes the gut mycobiome and its relevance to common diseases. Cell 2024;187:2969-2989.e24. [PMID: 38776919 DOI: 10.1016/j.cell.2024.04.043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Revised: 02/17/2024] [Accepted: 04/29/2024] [Indexed: 05/25/2024]
27
He X, Qi Z, Liu Z, Chang X, Zhang X, Li J, Wang M. Pangenome analysis reveals transposon-driven genome evolution in cotton. BMC Biol 2024;22:92. [PMID: 38654264 DOI: 10.1186/s12915-024-01893-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2023] [Accepted: 04/18/2024] [Indexed: 04/25/2024]  Open
28
Zhang Y, Nair S, Zhang Z, Zhao J, Zhao H, Lu L, Chang L, Jiao N. Adverse Environmental Perturbations May Threaten Kelp Farming Sustainability by Exacerbating Enterobacterales Diseases. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024;58:5796-5810. [PMID: 38507562 DOI: 10.1021/acs.est.3c09921] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/22/2024]
29
Macey MC. Genome-resolved metagenomics identifies novel active microbes in biogeochemical cycling within methanol-enriched soil. ENVIRONMENTAL MICROBIOLOGY REPORTS 2024;16:e13246. [PMID: 38575138 PMCID: PMC10994693 DOI: 10.1111/1758-2229.13246] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 03/15/2024] [Indexed: 04/06/2024]
30
Xu S, Huang H, Chen S, Muhammad ZUA, Wei W, Xie W, Jiang H, Hou S. Recovery of 1887 metagenome-assembled genomes from the South China Sea. Sci Data 2024;11:197. [PMID: 38351104 PMCID: PMC10864278 DOI: 10.1038/s41597-024-03050-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Accepted: 02/05/2024] [Indexed: 02/16/2024]  Open
31
Wang K, Hua G, Li J, Yang Y, Zhang C, Yang L, Hu X, Scheben A, Wu Y, Gong P, Zhang S, Fan Y, Zeng T, Lu L, Gong Y, Jiang R, Sun G, Tian Y, Kang X, Hu H, Li W. Duck pan-genome reveals two transposon insertions caused bodyweight enlarging and white plumage phenotype formation during evolution. IMETA 2024;3:e154. [PMID: 38868520 PMCID: PMC10989122 DOI: 10.1002/imt2.154] [Citation(s) in RCA: 16] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Accepted: 11/07/2023] [Indexed: 06/14/2024]
32
Wang Z, You R, Han H, Liu W, Sun F, Zhu S. Effective binning of metagenomic contigs using contrastive multi-view representation learning. Nat Commun 2024;15:585. [PMID: 38233391 PMCID: PMC10794208 DOI: 10.1038/s41467-023-44290-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Accepted: 12/07/2023] [Indexed: 01/19/2024]  Open
33
Abakarova M, Marquet C, Rera M, Rost B, Laine E. Alignment-based Protein Mutational Landscape Prediction: Doing More with Less. Genome Biol Evol 2023;15:evad201. [PMID: 37936309 PMCID: PMC10653582 DOI: 10.1093/gbe/evad201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Revised: 10/27/2023] [Accepted: 11/01/2023] [Indexed: 11/09/2023]  Open
34
Gu L, Li X, Zhu W, Shen Y, Wang Q, Liu W, Zhang J, Zhang H, Li J, Li Z, Liu Z, Li C, Wang H. Ultrasensitive proteomics depicted an in-depth landscape for the very early stage of mouse maternal-to-zygotic transition. J Pharm Anal 2023;13:942-954. [PMID: 37719194 PMCID: PMC10499587 DOI: 10.1016/j.jpha.2023.05.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Revised: 05/05/2023] [Accepted: 05/08/2023] [Indexed: 09/19/2023]  Open
35
Pan S, Zhao XM, Coelho LP. SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing. Bioinformatics 2023;39:i21-i29. [PMID: 37387171 PMCID: PMC10311329 DOI: 10.1093/bioinformatics/btad209] [Citation(s) in RCA: 32] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/01/2023]  Open
36
Jia L, Wu Y, Dong Y, Chen J, Chen WH, Zhao XM. A survey on computational strategies for genome-resolved gut metagenomics. Brief Bioinform 2023;24:7145904. [PMID: 37114640 DOI: 10.1093/bib/bbad162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Revised: 03/20/2023] [Accepted: 04/04/2023] [Indexed: 04/29/2023]  Open
37
Sereika M, Petriglieri F, Jensen TBN, Sannikov A, Hoppe M, Nielsen PH, Marshall IPG, Schramm A, Albertsen M. Closed genomes uncover a saltwater species of Candidatus Electronema and shed new light on the boundary between marine and freshwater cable bacteria. THE ISME JOURNAL 2023;17:561-569. [PMID: 36697964 PMCID: PMC10030654 DOI: 10.1038/s41396-023-01372-6] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Revised: 01/11/2023] [Accepted: 01/13/2023] [Indexed: 01/26/2023]
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