1
|
Zare-Mehrjerdi O, Trader G, Kirik V. Overlap extension cloning of PCR products into a Gateway-compatible plasmid vector. Biotechniques 2023. [PMID: 37424091 PMCID: PMC10388215 DOI: 10.2144/btn-2023-0001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/11/2023] Open
Abstract
A PCR cloning method that combines a dual selection pGATE-1 plasmid vector and an improved overlap extension cloning was developed. This efficient and cost-effective method allows for the introduction of DNA fragments into the Gateway cloning pipeline. The cloning efficiency is facilitated by a dual selection that includes the ccdB gene and gentamicin resistance. For users of the Gateway cloning system, substantial cost saving comes from eliminating BP recombination and ligation reactions to introduce DNA fragments into pDONR or pENTR vectors. Beyond the Gateway technology, this recombination-based cloning system can be used to efficiently clone PCR amplicons by adding 24-base pair adaptor sequences that are utilized by bacterial homologous recombination mechanism.
Collapse
Affiliation(s)
- Omid Zare-Mehrjerdi
- Illinois State University, School of Biological Sciences, Normal, IL 61790-4120, USA
| | - Gracie Trader
- Illinois State University, School of Biological Sciences, Normal, IL 61790-4120, USA
| | - Viktor Kirik
- Illinois State University, School of Biological Sciences, Normal, IL 61790-4120, USA
| |
Collapse
|
2
|
Eche S, Gordon ML. Recombinant expression of HIV-1 protease using soluble fusion tags in Escherichia coli: A vital tool for functional characterization of HIV-1 protease. Virus Res 2021; 295:198289. [PMID: 33418026 DOI: 10.1016/j.virusres.2020.198289] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Revised: 12/23/2020] [Accepted: 12/25/2020] [Indexed: 10/22/2022]
Abstract
HIV-1 protease expression in the laboratory is demanding because of its high cytotoxicity, making it difficult to express in bacterial expression systems such as Escherichia coli. To overcome these challenges, HIV-1 protease fusion with solubility enhancing tags helps to mitigate its cytotoxic effect and drive its expression as a soluble protein. Therefore, this review focuses on the expression of bioactive HIV-1 protease using solubility-enhancing fusion tags in Escherichia coli and summarises the characteristic features of the different common fusion tags that have been used in the expression of HIV-1 protease. This review will assist researchers with their choice of protein fusion tag for HIV-1 protease expression.
Collapse
Affiliation(s)
- Simeon Eche
- School of Laboratory Medicine and Medical Sciences, University of KwaZulu-Natal, Durban, 4001, South Africa.
| | - Michelle L Gordon
- School of Laboratory Medicine and Medical Sciences, University of KwaZulu-Natal, Durban, 4001, South Africa.
| |
Collapse
|
3
|
Jiang D, Zhang X, Pang Y, Zhang J, Wang J, Huang Y. Terminal transfer amplification and sequencing for high-efficiency and low-bias copy number profiling of fragmented DNA samples. Protein Cell 2020; 10:229-233. [PMID: 29687362 PMCID: PMC6338616 DOI: 10.1007/s13238-018-0540-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022] Open
Affiliation(s)
- Dongqing Jiang
- School of Life Sciences, Biodynamic Optical Imaging Center (BIOPIC), and Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, 100871, China
| | - Xiannian Zhang
- School of Life Sciences, Biodynamic Optical Imaging Center (BIOPIC), and Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, 100871, China
| | - Yuhong Pang
- School of Life Sciences, Biodynamic Optical Imaging Center (BIOPIC), and Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, 100871, China
| | - Jianyun Zhang
- Department of Oral Pathology, School and Hospital of Stomatology, Peking University, Beijing, 100081, China
| | - Jianbin Wang
- School of Life Sciences, Tsinghua University, Beijing, 100084, China. .,Center for Life Sciences, Beijing, 100871, China.
| | - Yanyi Huang
- School of Life Sciences, Biodynamic Optical Imaging Center (BIOPIC), and Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, 100871, China. .,Center for Life Sciences, Beijing, 100871, China. .,Materials Science and Engineering, College of Engineering, Peking University, Beijing, 100871, China.
| |
Collapse
|