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Li W, Qiang X, Qin S, Huang Y, Hu Y, Bai B, Hou J, Gao R, Zhang X, Mi Z, Fan H, Ye H, Tong Y, Mao P. Virome diversity analysis reveals novel enteroviruses and a human picobirnavirus in stool samples from African green monkeys with diarrhea. INFECTION GENETICS AND EVOLUTION 2020; 82:104279. [PMID: 32165243 PMCID: PMC7102571 DOI: 10.1016/j.meegid.2020.104279] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/07/2020] [Revised: 03/05/2020] [Accepted: 03/07/2020] [Indexed: 12/12/2022]
Abstract
It is important to identify viruses in animals because most infectious diseases in humans are caused by viruses of zoonotic origin. African green monkey is a widely used non-human primate model in biomedical investigations. In this study, total RNAs were extracted from stool samples of 10 African green monkeys with diarrhea. High-throughput sequencing was used to characterize viromes. PCR and Sanger sequencing were used to determine the full genome sequences. Great viral diversity was observed. The dominant viruses were enteroviruses and picobirnaviruses. Six enterovirus genomes and a picobirnavirus RNA-dependent RNA polymerase sequence were characterized. Five enteroviruses belonged to two putative new genotypes of species Enterovirus J. One enterovirus belonged to EV-A92. The picobirnavirus RNA-dependent RNA polymerase sequence had the highest nucleotide similarity (93.48%) with human picobirnavirus isolate GPBV6C2. The present study helped to identify the potential zoonotic viruses in African green monkeys. Further investigations are required to elucidate their pathogenic roles in animals and humans.
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Affiliation(s)
- Wenjuan Li
- Chinese PLA Medical School, Beijing 100853, China; Fifth Medical Center of Chinese PLA General Hospital, Beijing 100039, China
| | - Xin Qiang
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, China
| | - Si Qin
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, China
| | - Yong Huang
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, China
| | - Yan Hu
- Fifth Medical Center of Chinese PLA General Hospital, Beijing 100039, China
| | - Bingke Bai
- Fifth Medical Center of Chinese PLA General Hospital, Beijing 100039, China
| | - Jun Hou
- Fifth Medical Center of Chinese PLA General Hospital, Beijing 100039, China
| | - Rong Gao
- Fifth Medical Center of Chinese PLA General Hospital, Beijing 100039, China
| | - Xianglilan Zhang
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, China
| | - Zhiqiang Mi
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, China
| | - Hang Fan
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, China.
| | - Huahu Ye
- Laboratory Animal Center of the Academy of Military Medical Sciences, Beijing 100071, China.
| | - Yigang Tong
- BAIC-SM, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, China.
| | - Panyong Mao
- Chinese PLA Medical School, Beijing 100853, China; Fifth Medical Center of Chinese PLA General Hospital, Beijing 100039, China.
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