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Haapanen-Saaristo AM, Calhim S, Paatero I. High-resolution live imaging of tardigrade response to anoxia. Micron 2025; 196-197:103847. [PMID: 40367672 DOI: 10.1016/j.micron.2025.103847] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2025] [Revised: 05/07/2025] [Accepted: 05/07/2025] [Indexed: 05/16/2025]
Abstract
Tardigrades are well-known for their ability to tolerate extreme environmental conditions such as heat, drought and lack of oxygen by undergoing cryptobiosis. The molecular responses to stress have been studied in detail, but the physiological and morphogenetic changes during cryptobiosis are less understood. We developed new live high-resolution fluorescence microscopy protocols to visualize the tardigrade response to lack of oxygen - anoxybiosis. High-resolution time-lapse imaging enabled analysis of cellular morphology and tracking of cell movements during anoxybiosis. These analyses revealed considerable changes in morphology, composition and movement of storage cells. Our observations and new imaging protocols can be used to study morphological and cellular response to stress in tardigrades.
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Affiliation(s)
| | - Sara Calhim
- Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland
| | - Ilkka Paatero
- Turku Bioscience Centre, University of Turku and Åbo Akademi University, Turku, Finland.
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2
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Li L, Ge Z, Liu S, Zheng K, Li Y, Chen K, Fu Y, Lei X, Cui Z, Wang Y, Huang J, Liu Y, Duan M, Sun Z, Chen J, Li L, Shen P, Wang G, Chen J, Li R, Li C, Yang Z, Ning Y, Luo A, Chen B, Seim I, Liu X, Wang F, Yao Y, Guo F, Yang M, Liu CH, Fan G, Wang L, Yang D, Zhang L. Multi-omics landscape and molecular basis of radiation tolerance in a tardigrade. Science 2024; 386:eadl0799. [PMID: 39446960 DOI: 10.1126/science.adl0799] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Accepted: 09/05/2024] [Indexed: 10/26/2024]
Abstract
Tardigrades are captivating organisms known for their resilience in extreme environments, including ultra-high-dose radiation, but the underlying mechanisms of this resilience remain largely unknown. Using genome, transcriptome, and proteome analysis of Hypsibius henanensis sp. nov., we explored the molecular basis contributing to radiotolerance in this organism. A putatively horizontally transferred gene, DOPA dioxygenase 1 (DODA1), responds to radiation and confers radiotolerance by synthesizing betalains-a type of plant pigment with free radical-scavenging properties. A tardigrade-specific radiation-induced disordered protein, TRID1, facilitates DNA damage repair through a mechanism involving phase separation. Two mitochondrial respiratory chain complex assembly proteins, BCS1 and NDUFB8, accumulate to accelerate nicotinamide adenine dinucleotide (NAD+) regeneration for poly(adenosine diphosphate-ribosyl)ation (PARylation) and subsequent poly(adenosine diphosphate-ribose) polymerase 1 (PARP1)-mediated DNA damage repair. These three observations expand our understanding of mechanisms of tardigrade radiotolerance.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Inge Seim
- Marine Mammal and Marine Bioacoustics Laboratory, Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences, Sanya 572006, China
| | | | | | | | | | | | | | | | | | | | - Lingqiang Zhang
- State Key Laboratory of Medical Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China
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3
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Massa E, Vecchi M. Description of Macrobiotus kathyae sp. nov. (Parachela: Macrobiotidae) and first records of tardigrades from Indiana (USA). Zootaxa 2024; 5471:301-317. [PMID: 39646313 DOI: 10.11646/zootaxa.5471.3.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2024] [Indexed: 12/10/2024]
Abstract
The integrative description of the new species Macrobiotus kathyae sp. nov. is reported in this study along with the first tardigrade records for Indiana (United States of America). The new species is characterized by having spines in the distal part of the processes ornamenting the free laid eggs. This modified Macrobiotus-type of ornamentations was previously reported also in Macrobiotus annewintersae Vecchi & Stec, 2021 with which the new species forms a monophyletic clade. In seven out of the nine examined samples, eight tardigrade taxa were found including the new species, the first record outside the type locality of Macrobiotus basiatus Nelson et al., 2020, and the northernmost location for the genus Barbaria.
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Affiliation(s)
- Edoardo Massa
- Department of Life Sciences; University of Modena and Reggio Emilia; Modena; Italy.
| | - Matteo Vecchi
- Institute of Systematics and Evolution of Animals; Polish Academy of Sciences; Kraków; Poland.
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4
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Kayastha P, Szydło W, Mioduchowska M, Kaczmarek Ł. Morphological and genetic variability in cosmopolitan tardigrade species-Paramacrobiotus fairbanksi Schill, Förster, Dandekar & Wolf, 2010. Sci Rep 2023; 13:17672. [PMID: 37848470 PMCID: PMC10582252 DOI: 10.1038/s41598-023-42653-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2023] [Accepted: 09/13/2023] [Indexed: 10/19/2023] Open
Abstract
Paramacrobiotus fairbanksi was described from Alaska (USA) based on integrative taxonomy and later reported from various geographical localities making it a true cosmopolitan species. The 'Everything is Everywhere' (EiE) hypothesis assumes that the geographic distribution of microscopic organisms is not limited by dispersal but by local environmental conditions, making them potentially cosmopolitan. In the present work we report four new populations of P. fairbanksi from the Northern Hemisphere which suggests that the 'EiE' hypothesis is true, at least for some tardigrade species. We also compared all known populations of P. fairbanksi at the genetic and morphological levels. The p-distances between COI haplotypes of all sequenced P. fairbanksi populations from Albania, Antarctica, Canada, Italy, Madeira, Mongolia, Spain, USA and Poland ranged from 0.002 to 0.005%. In total, twelve haplotypes (H1-H12) of COI gene fragments were identified. We also report statistically significant morphometrical differences of species even though they were cultured and bred in the same laboratory conditions. Furthermore, we also discuss differences in the potential distribution of two Paramacrobiotus species.
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Affiliation(s)
- Pushpalata Kayastha
- Department of Animal Taxonomy and Ecology, Faculty of Biology, Adam Mickiewicz University, Poznań, Uniwersytetu Poznańskiego 6, 61-614, Poznań, Poland.
| | - Wiktoria Szydło
- Center for Advanced Technology, Adam Mickiewicz University, Poznań, Uniwersytetu Poznańskiego 10, 61-614, Poznań, Poland
- Population Ecology Lab, Faculty of Biology, Adam Mickiewicz University, Poznań, Poland
| | - Monika Mioduchowska
- Department of Evolutionary Genetics and Biosystematics, Faculty of Biology, University of Gdańsk, Wita Stwosza 59, 80-308, Gdańsk, Poland
| | - Łukasz Kaczmarek
- Department of Animal Taxonomy and Ecology, Faculty of Biology, Adam Mickiewicz University, Poznań, Uniwersytetu Poznańskiego 6, 61-614, Poznań, Poland
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5
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Kayastha P, Mioduchowska M, Gawlak M, Sługocki Ł, Araújo R, Silva JJG, Kaczmarek Ł. Integrative description of Macrobiotus kosmali sp. nov. ( hufelandi group) from the Island of Madeira ( Portugal). THE EUROPEAN ZOOLOGICAL JOURNAL 2023. [DOI: 10.1080/24750263.2022.2163312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023] Open
Affiliation(s)
- P. Kayastha
- Department of Animal Taxonomy and Ecology, Faculty of Biology, Adam Mickiewicz University in Poznań, Poznań, Poland
| | - M. Mioduchowska
- Department of Evolutionary Genetics and Biosystematics, Faculty of Biology, University of Gdańsk, Gdańsk, Poland
| | - M. Gawlak
- Institute of Plant Protection – National Research Institute, Poznań, Poland
| | - Ł. Sługocki
- Department of Hydrobiology, Institute of Biology, University of Szczecin, Szczecin, Poland
| | - R. Araújo
- Natural History Museum of Funchal, Funchal, Portugal
| | | | - Ł. Kaczmarek
- Department of Animal Taxonomy and Ecology, Faculty of Biology, Adam Mickiewicz University in Poznań, Poznań, Poland
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Bertolani R, Cesari M, Giovannini I, Rebecchi L, Guidetti R, Kaczmarek Ł, Pilato G. The Macrobiotus persimilis-polonicus complex (Eutardigrada, Macrobiotidae), another example of problematic species identification, with the description of four new species. ORG DIVERS EVOL 2022. [DOI: 10.1007/s13127-022-00599-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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Integrative taxonomy helps to revise systematics and questions the purported cosmopolitan nature of the type species within the genus Diaforobiotus (Eutardigrada: Richtersiusidae). ORG DIVERS EVOL 2022. [DOI: 10.1007/s13127-022-00592-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Abstract
Recent advances in tardigrade taxonomy have been greatly enhanced by the redescriptions of the type species for particular taxa or species groups. De novo characterisation of these key taxa now allows to describe tardigrade species diversity with improved precision and at higher rate, increasing the momentum towards resolving the taxonomic impediment in these micro-invertebrates. Since its description, Diaforobiotus islandicus (Richters, 1904) has been reported from many distinct localities around the world. This suggested, perhaps falsely, a cosmopolitan nature of the species. However, potential erroneous assignment of newly found populations to this species could be a result of the very general and superficial original description. In order to properly recognise and name species diversity within the genus, I provide here an integrative redescription of the type species (D. islandicus) with a neotype designation, a description of a new species, Diaforbiotus svalbardicus sp. nov, and dichotomous key for the genus. Both descriptions are based on detailed morphological and morphometric data associated with standard DNA sequences of four genetic markers (18S rRNA, 28S rRNA, ITS-2, and COI). The genus composition and diagnosis amendments of the family Richtersiuside are also discussed. The presented study constitutes a starting point for further systematic studies on the genus Diaforobiotus and new taxa discoveries.
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Macrobiotus rebecchii sp. nov.: A New Limno-Terrestrial and Hermaphroditic Tardigrade from Kyrgyzstan. Animals (Basel) 2022; 12:ani12212906. [DOI: 10.3390/ani12212906] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Revised: 10/19/2022] [Accepted: 10/20/2022] [Indexed: 11/16/2022] Open
Abstract
A new tardigrade species of the genus Macrobiotus C.A.S. Schultze, 1834 from Kyrgyzstan, is described and illustrated in this paper. Macrobiotus rebecchii sp. nov. is a hermaphroditic and limnoterrestrial species found in a moss growing on a rock in Toluk village. Specimens of the new species were examined for its morphological details using contrast phase light microscope (PCM) and scanning electron microscope (SEM). Genetic data in the form of DNA sequences of commonly used molecular markers were also obtained (18S rRNA, COI). Phenotypically the new species is most similar to Macrobiotus joannae Pilato & Binda, 1983, Macrobiotus punctillus Pilato, Binda & Azzaro, 1990, and Macrobiotus hannae Nowak & Stec, 2018, but can be easily differentiated from all of them by its body granulation pattern.
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Stec D, Cancellario T, Fontaneto D. Diversification rates in Tardigrada indicate a decreasing tempo of lineage splitting regardless of reproductive mode. ORG DIVERS EVOL 2022. [DOI: 10.1007/s13127-022-00578-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
AbstractUnderstanding the dynamics of speciation and extinction events is one of the most interesting subjects in evolutionary biology that relates to all life forms, even the smallest ones. Tardigrades are microscopic invertebrates that attracted public and scientific attention mostly due to their ability to enter into the diapause stage called cryptobiosis and in such stage resist extremely harsh environmental conditions. However, although recent research solved a considerable number of phylogenetic uncertainties and further uncovered physiological mechanisms of cryptobiosis, not much attention is given to the evolutionary forces shaping tardigrade diversity. Here, we investigated the effect of reproductive mode on diversification rates in tardigrades using three groups: macrobiotids, echiniscids and milnesids, which represent low, moderate and high levels of parthenogenesis, respectively. Our results showed a decreasing tempo of diversification events for each of the studied groups without any differences that could be ascribed to reproductive mode. We discussed the observed lack of effect in tardigrades acknowledging deficiencies in available data sets and encouraging further studies to understand whether our results can be considered reliable.
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Vecchi M, Chartrain J, Puro S, Tynkkynen R, Vuori T, Michalczyk Ł, Calhim S. First insights into female sperm storage duration in tardigrades. Ecol Evol 2022; 12:e9010. [PMID: 35784050 PMCID: PMC9201749 DOI: 10.1002/ece3.9010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Revised: 04/28/2022] [Accepted: 05/20/2022] [Indexed: 11/08/2022] Open
Abstract
Female sperm storage is ubiquitous in the animal kingdom and it has been shown to be linked to several evolutionary processes, from postcopulatory sexual selection to dispersal. Here we report, for the first time, long-term sperm storage in females of the tardigrade Macrobiotus polonicus. Females, isolated after a short contact with a male, were able to use the stored sperm for up to 5 weeks (mean of 2 weeks), which translates to a considerable proportion of female post-mating longevity under controlled laboratory conditions (60% on average). Our study provides the first insights into the duration of sperm storage, an underexplored feature of the reproductive biology of tardigrades. Additionally, we discuss important considerations for reproductive studies on these non-model animals.
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Affiliation(s)
- Matteo Vecchi
- Department of Biological and Environmental ScienceUniversity of JyväskyläJyväskyläFinland
| | - Justine Chartrain
- Department of Biological and Environmental ScienceUniversity of JyväskyläJyväskyläFinland
| | - Simo Puro
- Department of Biological and Environmental ScienceUniversity of JyväskyläJyväskyläFinland
| | - Riikka Tynkkynen
- Department of Biological and Environmental ScienceUniversity of JyväskyläJyväskyläFinland
| | - Tommi Vuori
- Department of Biological and Environmental ScienceUniversity of JyväskyläJyväskyläFinland
| | - Łukasz Michalczyk
- Department of Invertebrate Evolution, Institute of Zoology and Biomedical Research, Faculty of BiologyJagiellonian UniversityKrakówPoland
| | - Sara Calhim
- Department of Biological and Environmental ScienceUniversity of JyväskyläJyväskyläFinland
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Guidetti R, Cesari M, Giovannini I, Ebel C, Förschler MI, Rebecchi L, Schill RO. Morphology and taxonomy of the genus Ramazzottius (Eutardigrada; Ramazzottiidae) with the integrative description of Ramazzottius kretschmanni sp. nov. THE EUROPEAN ZOOLOGICAL JOURNAL 2022. [DOI: 10.1080/24750263.2022.2043468] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022] Open
Affiliation(s)
- R. Guidetti
- Department of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy
| | - M. Cesari
- Department of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy
| | - I. Giovannini
- Department of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy
| | - C. Ebel
- Department Visitor Information, Black Forest National Park, Seebach, Germany
| | - M. I. Förschler
- Department of Ecosystem Monitoring, Research and Conservation. Black Forest National Park, Freudenstadt, Germany
| | - L. Rebecchi
- Department of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy
| | - R. O. Schill
- Institute of Biomaterials and Biomolecular Systems, University of Stuttgart, Stuttgart, Germany
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12
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Reaching the Monophyly: Re-Evaluation of the Enigmatic Species Tenuibiotus hyperonyx (Maucci, 1983) and the Genus Tenuibiotus (Eutardigrada). Animals (Basel) 2022; 12:ani12030404. [PMID: 35158727 PMCID: PMC8833838 DOI: 10.3390/ani12030404] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Revised: 01/28/2022] [Accepted: 01/29/2022] [Indexed: 11/17/2022] Open
Abstract
Revisions and redescriptions of taxa described in the past and that are now categorized as insufficiently diagnosed often play a crucial role in making further progress in modern taxonomy in many groups of organisms. Here we revised an enigmatic tardigrade species Tenuibiotus hyperonyx (Maucci, 1983) based on the newly discovered topotypic population from the Italian Alps. We performed an integrative analysis of morphological and genetic data in order to present an upgraded species description and elucidate its phylogenetic position. Our results enabled us to confidently place T.hyperonyx within the family Richtersiusidae, as a member of the genus Diaforobiotus. This change, together with a re-assessment of microphotographs of the Tenuibiotus willardi (Pilato, 1977) and Tenuibiotus bozhkae Pilato, Kiosya, Lisi, Inshina & Biserov, 2011 types, led to the discussion on species composition with narrative taxa amendments for the taxonomic parties involved in the proposed alteration.
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Stec D, Vončina K, Møbjerg Kristensen R, Michalczyk Ł. The Macrobiotus ariekammensis species complex provides evidence for parallel evolution of claw elongation in macrobiotid tardigrades. Zool J Linn Soc 2022. [DOI: 10.1093/zoolinnean/zlab101] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Abstract
The recent integrative revision of the family Macrobiotidae demonstrated monophyly of the genus Macrobiotus and its complex, mosaic morphological evolution. Here, we analyse three Macrobiotus populations that exhibit extraordinary claw morphology characterized by elongated primary branches. Two of these populations, from the Arctic, were initially classified as Macrobiotus ariekammensis, but detailed integrative analyses resulted in splitting them into two subspecies: Macrobiotus ariekammensis ariekammensis and Macrobiotus ariekammensis groenlandicus subsp. nov.. The third population was Macrobiotus kirghizicus from Kyrgyzstan. Given the unusual phenotype of the above-mentioned taxa, we tested whether they constitute a distinct lineage in the family Macrobiotidae and could be delineated as a new genus. Although the phylogenetic investigation showed that the three taxa form a monophyletic group, the clade is nested in the genus Macrobiotus. Therefore, despite their morphological distinctiveness, a new genus cannot be established and we group these taxa in the Macrobiotus ariekammensis species complex instead. The complex includes the three above-mentioned taxa and Macrobiotus ramoli, which is included based on morphological characters. Moreover, our results provide evidence for rapid parallel evolution of long claws in macrobiotid tardigrades inhabiting cold and icy environments. Finally, we discuss the validity of the recent suppression of the genus Xerobiotus, which gathers macrobiotids with reduced claws.
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Affiliation(s)
- Daniel Stec
- Department of Invertebrate Evolution, Institute of Zoology and Biomedical Research, Faculty of Biology, Jagiellonian University, Gronostajowa 9, 30-387 Kraków, Poland
- Institute of Systematics and Evolution of Animals, Polish Academy of Sciences, Sławkowska 17, 31-016 Kraków, Poland
| | - Katarzyna Vončina
- Department of Invertebrate Evolution, Institute of Zoology and Biomedical Research, Faculty of Biology, Jagiellonian University, Gronostajowa 9, 30-387 Kraków, Poland
| | | | - Łukasz Michalczyk
- Department of Invertebrate Evolution, Institute of Zoology and Biomedical Research, Faculty of Biology, Jagiellonian University, Gronostajowa 9, 30-387 Kraków, Poland
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